scaffold330 Repeat List
| genome |
start |
end |
strand |
repeat-name |
repeat-class |
| scaffold330 |
95 |
129 |
+ |
A-rich |
Low_complexity |
| scaffold330 |
703 |
721 |
+ |
(ATTT)n |
Simple_repeat |
| scaffold330 |
722 |
755 |
+ |
(TTA)n |
Simple_repeat |
| scaffold330 |
1046 |
1063 |
+ |
(A)n |
Simple_repeat |
| scaffold330 |
1094 |
1290 |
+ |
RS5734 |
Unspecified |
| scaffold330 |
1361 |
1394 |
+ |
(AAAT)n |
Simple_repeat |
| scaffold330 |
1867 |
1929 |
+ |
A-rich |
Low_complexity |
| scaffold330 |
2350 |
2449 |
+ |
RS16382 |
Unspecified |
| scaffold330 |
2572 |
2835 |
- |
RS2504 |
Unspecified |
| scaffold330 |
3446 |
3487 |
+ |
A-rich |
Low_complexity |
| scaffold330 |
4180 |
4215 |
+ |
A-rich |
Low_complexity |
| scaffold330 |
4440 |
4470 |
+ |
(A)n |
Simple_repeat |
| scaffold330 |
4668 |
4905 |
+ |
(TTCAG)n |
Simple_repeat |
| scaffold330 |
5065 |
5334 |
- |
RS1 |
Unspecified |
| scaffold330 |
5903 |
6158 |
- |
RS1 |
Unspecified |
| scaffold330 |
6064 |
6187 |
+ |
RS16358 |
Unspecified |
| scaffold330 |
6481 |
6527 |
+ |
A-rich |
Low_complexity |
| scaffold330 |
7242 |
7299 |
+ |
RS739 |
Unspecified |
| scaffold330 |
7300 |
7442 |
- |
RS163 |
Unspecified |
| scaffold330 |
7447 |
8394 |
- |
PL544 |
Unspecified |
| scaffold330 |
8397 |
8571 |
- |
RS163 |
Unspecified |
| scaffold330 |
9368 |
9422 |
+ |
(ATTAA)n |
Simple_repeat |
| scaffold330 |
9656 |
9738 |
+ |
(GGC)n |
Simple_repeat |
| scaffold330 |
9853 |
9913 |
+ |
(GCC)n |
Simple_repeat |
| scaffold330 |
10362 |
10606 |
- |
RS4 |
Unspecified |
| scaffold330 |
10910 |
11001 |
+ |
RS12449 |
Unspecified |
| scaffold330 |
13794 |
13875 |
+ |
RS1469 |
Unspecified |
| scaffold330 |
13875 |
14049 |
+ |
RS2666 |
Unspecified |
| scaffold330 |
14543 |
14770 |
+ |
RS13348 |
Unspecified |
| scaffold330 |
15234 |
15601 |
+ |
BvL1-2 |
LINE/L1 |
| scaffold330 |
16447 |
16508 |
+ |
(ACCCGAA)n |
Simple_repeat |
| scaffold330 |
16674 |
16812 |
+ |
(CCCGA)n |
Simple_repeat |
| scaffold330 |
16994 |
17034 |
+ |
(TATAATT)n |
Simple_repeat |
| scaffold330 |
17167 |
17208 |
+ |
(TTTTA)n |
Simple_repeat |
| scaffold330 |
17331 |
17356 |
+ |
(TTTTA)n |
Simple_repeat |
| scaffold330 |
17890 |
17941 |
+ |
(TATTAAC)n |
Simple_repeat |
| scaffold330 |
17980 |
18555 |
- |
PL721 |
Unspecified |
| scaffold330 |
18813 |
18834 |
+ |
(T)n |
Simple_repeat |
| scaffold330 |
18835 |
18840 |
+ |
(CTTTT)n |
Simple_repeat |
| scaffold330 |
18925 |
18957 |
+ |
(TAAAC)n |
Simple_repeat |
| scaffold330 |
18979 |
19063 |
+ |
LTR-7_Mad-LTR |
LTR |
| scaffold330 |
20803 |
20836 |
+ |
(A)n |
Simple_repeat |
| scaffold330 |
21140 |
21246 |
+ |
RS982 |
Unspecified |
| scaffold330 |
21540 |
21563 |
+ |
(TATC)n |
Simple_repeat |
| scaffold330 |
21818 |
21848 |
+ |
(GCCGAA)n |
Simple_repeat |
| scaffold330 |
21879 |
21910 |
+ |
(CTGCCA)n |
Simple_repeat |
| scaffold330 |
23289 |
23305 |
+ |
(T)n |
Simple_repeat |
| scaffold330 |
23420 |
23448 |
+ |
(AGTGA)n |
Simple_repeat |
| scaffold330 |
27604 |
27639 |
+ |
A-rich |
Low_complexity |
| scaffold330 |
27833 |
28033 |
- |
SINE2-1_PD |
SINE/tRNA-RTE |
| scaffold330 |
27833 |
27893 |
- |
SINE2-1_PD |
SINE/tRNA-RTE |
| scaffold330 |
27886 |
28033 |
- |
RS573 |
Unspecified |
| scaffold330 |
32423 |
32464 |
+ |
(CTTTTTC)n |
Simple_repeat |
| scaffold330 |
35955 |
36181 |
+ |
RS18 |
Unspecified |
| scaffold330 |
36648 |
36691 |
+ |
(ATTGGA)n |
Simple_repeat |
| scaffold330 |
37726 |
37771 |
+ |
(TTATTA)n |
Simple_repeat |
| scaffold330 |
37989 |
38057 |
+ |
(TATT)n |
Simple_repeat |
| scaffold330 |
38125 |
38306 |
- |
RS79 |
Unspecified |
| scaffold330 |
38375 |
38403 |
+ |
(TGATT)n |
Simple_repeat |
| scaffold330 |
38429 |
38484 |
- |
RS15113 |
Unspecified |
| scaffold330 |
38440 |
38484 |
+ |
RS18363 |
Unspecified |
| scaffold330 |
38471 |
38577 |
+ |
RS3146 |
Unspecified |
| scaffold330 |
38758 |
38825 |
+ |
(A)n |
Simple_repeat |
| scaffold330 |
41485 |
41558 |
+ |
(CTGAA)n |
Simple_repeat |
| scaffold330 |
41583 |
41627 |
+ |
(CTGAA)n |
Simple_repeat |
| scaffold330 |
42778 |
42848 |
+ |
(A)n |
Simple_repeat |
| scaffold330 |
45522 |
45740 |
+ |
EnSpm-1_HV |
DNA/CMC-EnSpm |
| scaffold330 |
45741 |
45768 |
+ |
(ATTCA)n |
Simple_repeat |
| scaffold330 |
45871 |
45895 |
+ |
(T)n |
Simple_repeat |
| scaffold330 |
46082 |
46419 |
- |
RS477 |
Unspecified |
| scaffold330 |
50296 |
50322 |
+ |
(T)n |
Simple_repeat |
| scaffold330 |
50441 |
50462 |
+ |
(A)n |
Simple_repeat |
| scaffold330 |
51048 |
51253 |
+ |
RS237 |
Unspecified |
| scaffold330 |
52693 |
52759 |
+ |
(TTTATA)n |
Simple_repeat |
| scaffold330 |
53077 |
53101 |
+ |
(GTCGTA)n |
Simple_repeat |
| scaffold330 |
55692 |
55837 |
- |
RS718 |
Unspecified |
| scaffold330 |
55852 |
55894 |
+ |
(CATT)n |
Simple_repeat |
| scaffold330 |
55932 |
55976 |
+ |
A-rich |
Low_complexity |
| scaffold330 |
57010 |
57100 |
+ |
(GAT)n |
Simple_repeat |
| scaffold330 |
57446 |
57563 |
+ |
MuDR-8_VV |
DNA/MULE-MuDR |
| scaffold330 |
59011 |
59150 |
+ |
RS3059 |
Unspecified |
| scaffold330 |
59291 |
59657 |
+ |
RS8 |
Unspecified |
| scaffold330 |
59880 |
60419 |
+ |
RS1281 |
Unspecified |
| scaffold330 |
60482 |
60723 |
+ |
RS2495 |
Unspecified |
| scaffold330 |
60790 |
61465 |
+ |
RS988 |
Unspecified |
| scaffold330 |
60887 |
61498 |
+ |
RS2588 |
Unspecified |
| scaffold330 |
61513 |
61923 |
- |
RS1571 |
Unspecified |
| scaffold330 |
62195 |
62236 |
+ |
A-rich |
Low_complexity |
| scaffold330 |
62732 |
62913 |
+ |
RS260 |
Unspecified |
| scaffold330 |
62905 |
63470 |
- |
RS7435 |
Unspecified |
| scaffold330 |
64048 |
64422 |
- |
MuDR_A_B |
MuDR_A_B(TransposonPSI) |
| scaffold330 |
64246 |
64326 |
- |
MuSHAN_MT |
DNA/MULE-MuDR |
| scaffold330 |
65041 |
65117 |
+ |
A-rich |
Low_complexity |
| scaffold330 |
65581 |
65623 |
+ |
(AACT)n |
Simple_repeat |
| scaffold330 |
68042 |
68137 |
+ |
GA-rich |
Low_complexity |
| scaffold330 |
68732 |
68753 |
+ |
(A)n |
Simple_repeat |
| scaffold330 |
68858 |
68969 |
- |
RS17860 |
Unspecified |
| scaffold330 |
68967 |
69230 |
- |
RS356 |
Unspecified |
| scaffold330 |
69610 |
69770 |
- |
RS163 |
Unspecified |
| scaffold330 |
70347 |
70684 |
+ |
RS994 |
Unspecified |
| scaffold330 |
71803 |
71938 |
+ |
Gypsy-72-LTR_ZM |
LTR/Gypsy |
| scaffold330 |
71939 |
72023 |
+ |
(CGTATT)n |
Simple_repeat |
| scaffold330 |
72128 |
72636 |
- |
PL487 |
Unspecified |
| scaffold330 |
73142 |
73820 |
+ |
PL919 |
Unspecified |
| scaffold330 |
74099 |
74136 |
+ |
(TGTAA)n |
Simple_repeat |
| scaffold330 |
74137 |
74159 |
+ |
(GTA)n |
Simple_repeat |
| scaffold330 |
74160 |
74188 |
+ |
(TGTAA)n |
Simple_repeat |
| scaffold330 |
74475 |
74507 |
+ |
A-rich |
Low_complexity |
| scaffold330 |
75214 |
75371 |
+ |
RS994 |
Unspecified |
| scaffold330 |
75754 |
76023 |
- |
RS13542 |
Unspecified |
| scaffold330 |
76201 |
76223 |
+ |
(A)n |
Simple_repeat |
| scaffold330 |
76832 |
76904 |
+ |
A-rich |
Low_complexity |
| scaffold330 |
76993 |
77047 |
+ |
(A)n |
Simple_repeat |
| scaffold330 |
77063 |
77489 |
- |
PL580 |
Unspecified |
| scaffold330 |
78154 |
78216 |
+ |
(CTCGCT)n |
Simple_repeat |
| scaffold330 |
84276 |
84308 |
+ |
A-rich |
Low_complexity |
| scaffold330 |
84577 |
84922 |
+ |
RS600 |
Unspecified |
| scaffold330 |
85155 |
85193 |
+ |
A-rich |
Low_complexity |
| scaffold330 |
85379 |
85407 |
+ |
(TAA)n |
Simple_repeat |
| scaffold330 |
85943 |
85987 |
- |
Copia-3_PTri-I |
LTR/Copia |
| scaffold330 |
86140 |
86316 |
+ |
RS952 |
Unspecified |
| scaffold330 |
86456 |
86506 |
+ |
(CAAATC)n |
Simple_repeat |
| scaffold330 |
86780 |
86835 |
+ |
(AGTTC)n |
Simple_repeat |
| scaffold330 |
86837 |
86870 |
+ |
(ATT)n |
Simple_repeat |
| scaffold330 |
86869 |
87061 |
- |
RS356 |
Unspecified |
| scaffold330 |
87583 |
87613 |
+ |
(TCA)n |
Simple_repeat |
| scaffold330 |
87788 |
87933 |
+ |
(TAA)n |
Simple_repeat |
| scaffold330 |
87965 |
88044 |
+ |
(TTCAG)n |
Simple_repeat |
| scaffold330 |
88530 |
88698 |
- |
RS3039 |
Unspecified |
| scaffold330 |
88761 |
88861 |
+ |
(AAT)n |
Simple_repeat |
| scaffold330 |
89004 |
89080 |
+ |
(AAT)n |
Simple_repeat |
| scaffold330 |
89258 |
89416 |
+ |
RS5687 |
Unspecified |
| scaffold330 |
89348 |
89428 |
- |
RS3039 |
Unspecified |
| scaffold330 |
89677 |
89708 |
+ |
A-rich |
Low_complexity |
| scaffold330 |
89955 |
89969 |
+ |
(ATTTAA)n |
Simple_repeat |
| scaffold330 |
89970 |
90013 |
+ |
A-rich |
Low_complexity |
| scaffold330 |
90014 |
90027 |
+ |
(ATTTAA)n |
Simple_repeat |
| scaffold330 |
90212 |
90592 |
+ |
RS512 |
Unspecified |
| scaffold330 |
90629 |
90652 |
+ |
(T)n |
Simple_repeat |
| scaffold330 |
90783 |
90860 |
+ |
(AATTTC)n |
Simple_repeat |
| scaffold330 |
91016 |
91063 |
+ |
(ATTGTGA)n |
Simple_repeat |
| scaffold330 |
91232 |
91256 |
+ |
(TAAT)n |
Simple_repeat |
| scaffold330 |
91365 |
91437 |
+ |
A-rich |
Low_complexity |
| scaffold330 |
92202 |
92287 |
+ |
(TAA)n |
Simple_repeat |
| scaffold330 |
93167 |
93209 |
+ |
(CTCGCT)n |
Simple_repeat |
| scaffold330 |
93455 |
93477 |
+ |
(TTCT)n |
Simple_repeat |
| scaffold330 |
93478 |
93520 |
+ |
(TC)n |
Simple_repeat |
| scaffold330 |
95535 |
95575 |
+ |
(T)n |
Simple_repeat |
| scaffold330 |
96029 |
96071 |
+ |
(TGAAGAT)n |
Simple_repeat |
| scaffold330 |
96491 |
96638 |
+ |
RS12287 |
Unspecified |
| scaffold330 |
96633 |
96688 |
+ |
(AATTAC)n |
Simple_repeat |
| scaffold330 |
97268 |
97526 |
+ |
RS1 |
Unspecified |
| scaffold330 |
98319 |
98582 |
- |
PL298 |
Unspecified |
| scaffold330 |
98331 |
98617 |
- |
PL729 |
Unspecified |
| scaffold330 |
98610 |
98950 |
+ |
(AAT)n |
Simple_repeat |
| scaffold330 |
98882 |
98950 |
+ |
(AAT)n |
Simple_repeat |
| scaffold330 |
99071 |
99118 |
+ |
(ATTAAT)n |
Simple_repeat |
| scaffold330 |
99583 |
99633 |
+ |
(TTTTTA)n |
Simple_repeat |
| scaffold330 |
99794 |
99831 |
+ |
(TTGGTT)n |
Simple_repeat |
| scaffold330 |
100660 |
100700 |
+ |
(ATTAA)n |
Simple_repeat |
| scaffold330 |
100787 |
100816 |
+ |
(TAATGA)n |
Simple_repeat |
| scaffold330 |
101310 |
101448 |
+ |
ATHATN4 |
DNA/hAT-Ac |
| scaffold330 |
103442 |
103489 |
+ |
(ATTTTC)n |
Simple_repeat |
| scaffold330 |
104000 |
104164 |
- |
PL785 |
Unspecified |
| scaffold330 |
105942 |
106006 |
+ |
RETROSAT5_I-int |
LTR/Gypsy |
| scaffold330 |
106566 |
106613 |
+ |
(ATTTTC)n |
Simple_repeat |
| scaffold330 |
110203 |
110300 |
- |
ATENSPM1 |
DNA/CMC-EnSpm |
| scaffold330 |
110844 |
111051 |
+ |
(TCGGG)n |
Simple_repeat |
| scaffold330 |
111252 |
111480 |
+ |
(TCGGG)n |
Simple_repeat |
| scaffold330 |
112210 |
112269 |
+ |
(ATAATAT)n |
Simple_repeat |
| scaffold330 |
115002 |
115082 |
- |
RS26 |
Unspecified |
| scaffold330 |
115159 |
115321 |
- |
RS432 |
Unspecified |
| scaffold330 |
115839 |
115920 |
+ |
RS7380 |
Unspecified |
| scaffold330 |
115853 |
116073 |
+ |
RS714 |
Unspecified |
| scaffold330 |
116196 |
116243 |
+ |
(TTGTTTT)n |
Simple_repeat |
| scaffold330 |
116964 |
117027 |
+ |
A-rich |
Low_complexity |
| scaffold330 |
117925 |
117985 |
+ |
A-rich |
Low_complexity |
| scaffold330 |
118150 |
118168 |
+ |
(A)n |
Simple_repeat |
| scaffold330 |
118664 |
118787 |
+ |
RS191 |
Unspecified |
| scaffold330 |
118676 |
118757 |
+ |
RS7380 |
Unspecified |
| scaffold330 |
118690 |
118803 |
+ |
RS714 |
Unspecified |
| scaffold330 |
120155 |
120315 |
+ |
RS10166 |
Unspecified |
| scaffold330 |
121056 |
121114 |
- |
Gypsy-23_ST-LTR |
LTR/Gypsy |
| scaffold330 |
121466 |
121501 |
+ |
Gypsy-72_GM-I |
LTR/Gypsy |
| scaffold330 |
121503 |
121860 |
- |
RS4950 |
Unspecified |
| scaffold330 |
122097 |
122161 |
+ |
(GTGGT)n |
Simple_repeat |
| scaffold330 |
122162 |
122194 |
+ |
(GGT)n |
Simple_repeat |
| scaffold330 |
122321 |
122438 |
- |
RS7380 |
Unspecified |
| scaffold330 |
122580 |
122621 |
- |
LINE1-25_SBi |
LINE/L1 |
| scaffold330 |
124926 |
125245 |
- |
RS557 |
Unspecified |
| scaffold330 |
126109 |
126142 |
+ |
(ATCAA)n |
Simple_repeat |
| scaffold330 |
127491 |
127520 |
+ |
(ATCAA)n |
Simple_repeat |
| scaffold330 |
128379 |
128434 |
- |
RS511 |
Unspecified |
| scaffold330 |
128541 |
128656 |
+ |
(TCGGG)n |
Simple_repeat |
| scaffold330 |
128974 |
129085 |
+ |
HAT-10_Mad |
DNA/hAT-Ac |
| scaffold330 |
129099 |
129133 |
+ |
(CGGGT)n |
Simple_repeat |
| scaffold330 |
129466 |
129532 |
+ |
(AATAG)n |
Simple_repeat |
| scaffold330 |
129980 |
130026 |
+ |
(ACC)n |
Simple_repeat |
| scaffold330 |
130849 |
130949 |
+ |
(TTG)n |
Simple_repeat |
| scaffold330 |
132255 |
132286 |
+ |
A-rich |
Low_complexity |
| scaffold330 |
132773 |
132916 |
- |
RS342 |
Unspecified |
| scaffold330 |
132776 |
132902 |
+ |
RS342 |
Unspecified |
| scaffold330 |
133254 |
133412 |
+ |
RS5104 |
Unspecified |
| scaffold330 |
133584 |
133601 |
+ |
(T)n |
Simple_repeat |
| scaffold330 |
133725 |
133889 |
- |
RS14475 |
Unspecified |
| scaffold330 |
135436 |
137133 |
- |
MuDR_A_B |
MuDR_A_B(TransposonPSI) |
| scaffold330 |
136127 |
136667 |
- |
MuDR-11_SBi |
DNA/MULE-MuDR |
| scaffold330 |
138157 |
138205 |
+ |
(TTAA)n |
Simple_repeat |
| scaffold330 |
140560 |
140687 |
- |
RS1228 |
Unspecified |
| scaffold330 |
141715 |
141758 |
+ |
(ATTATAC)n |
Simple_repeat |
| scaffold330 |
142311 |
142331 |
+ |
(T)n |
Simple_repeat |
| scaffold330 |
148208 |
148386 |
+ |
RS5 |
Unspecified |
| scaffold330 |
149438 |
149813 |
+ |
RS1818 |
Unspecified |
| scaffold330 |
149910 |
150132 |
+ |
RS10013 |
Unspecified |
| scaffold330 |
149952 |
150179 |
- |
RS3687 |
Unspecified |
| scaffold330 |
150204 |
150238 |
+ |
(AATTTAG)n |
Simple_repeat |
| scaffold330 |
150336 |
150611 |
- |
RS586 |
Unspecified |
| scaffold330 |
150627 |
150756 |
- |
PL53 |
Unspecified |
| scaffold330 |
150644 |
151235 |
- |
PL268 |
Unspecified |
| scaffold330 |
152066 |
152154 |
+ |
(AATTTGT)n |
Simple_repeat |
| scaffold330 |
152220 |
152395 |
+ |
RS3175 |
Unspecified |
| scaffold330 |
153431 |
153831 |
+ |
RS792 |
Unspecified |
| scaffold330 |
153968 |
153992 |
+ |
(T)n |
Simple_repeat |
| scaffold330 |
154004 |
154043 |
+ |
(TTA)n |
Simple_repeat |
| scaffold330 |
154571 |
154674 |
+ |
(T)n |
Simple_repeat |
| scaffold330 |
154887 |
154920 |
+ |
(GATAA)n |
Simple_repeat |
| scaffold330 |
154943 |
154963 |
+ |
(T)n |
Simple_repeat |
| scaffold330 |
155321 |
155348 |
+ |
(TTGGT)n |
Simple_repeat |
| scaffold330 |
155597 |
155626 |
+ |
(T)n |
Simple_repeat |
| scaffold330 |
158532 |
158564 |
+ |
(TGA)n |
Simple_repeat |
| scaffold330 |
162310 |
162343 |
+ |
(A)n |
Simple_repeat |
| scaffold330 |
162497 |
162601 |
+ |
(TCGGG)n |
Simple_repeat |
| scaffold330 |
162636 |
162659 |
+ |
(TTTA)n |
Simple_repeat |
| scaffold330 |
162938 |
162968 |
+ |
G-rich |
Low_complexity |
| scaffold330 |
165631 |
165658 |
+ |
(CAA)n |
Simple_repeat |
| scaffold330 |
165986 |
166219 |
- |
RS15131 |
Unspecified |
| scaffold330 |
166481 |
166499 |
+ |
(T)n |
Simple_repeat |
| scaffold330 |
166592 |
166648 |
- |
RS5390 |
Unspecified |
| scaffold330 |
166645 |
166919 |
- |
RS1598 |
Unspecified |
| scaffold330 |
166943 |
166982 |
+ |
(T)n |
Simple_repeat |
| scaffold330 |
166983 |
167139 |
+ |
RS740 |
Unspecified |
| scaffold330 |
167693 |
168067 |
+ |
RS1463 |
Unspecified |
| scaffold330 |
349289 |
349316 |
+ |
(TCT)n |
Simple_repeat |