scaffold3425 Repeat List
| genome |
start |
end |
strand |
repeat-name |
repeat-class |
| scaffold3425 |
76 |
2217 |
- |
RS399 |
Unspecified |
| scaffold3425 |
5459 |
5964 |
- |
PL56 |
Unspecified |
| scaffold3425 |
5963 |
6572 |
- |
RS67 |
Unspecified |
| scaffold3425 |
6977 |
7287 |
- |
EnSpm-11_STu |
DNA/CMC-EnSpm |
| scaffold3425 |
7899 |
8006 |
+ |
L1-5_STu |
LINE/L1 |
| scaffold3425 |
8722 |
8786 |
+ |
ATLINE1_11 |
LINE/L1 |
| scaffold3425 |
8949 |
8988 |
+ |
L1-4_CPa |
LINE/L1 |
| scaffold3425 |
9186 |
10075 |
+ |
L1-5_STu |
LINE/L1 |
| scaffold3425 |
11914 |
11961 |
+ |
A-rich |
Low_complexity |
| scaffold3425 |
12956 |
13963 |
- |
PL355 |
Unspecified |
| scaffold3425 |
13072 |
14315 |
+ |
RS1879 |
Unspecified |
| scaffold3425 |
14311 |
14930 |
+ |
(TGT)n |
Simple_repeat |
| scaffold3425 |
14896 |
15884 |
+ |
(TGT)n |
Simple_repeat |
| scaffold3425 |
14896 |
14930 |
+ |
(TGT)n |
Simple_repeat |
| scaffold3425 |
14913 |
15884 |
+ |
RS709 |
Unspecified |
| scaffold3425 |
15272 |
16429 |
+ |
RS149 |
Unspecified |
| scaffold3425 |
16497 |
16545 |
- |
Gypsy-10_Pru-LTR |
LTR/Gypsy |
| scaffold3425 |
16751 |
16786 |
+ |
RS10272 |
Unspecified |
| scaffold3425 |
16787 |
16892 |
- |
PL800 |
Unspecified |
| scaffold3425 |
22700 |
22808 |
+ |
(ATGCTTT)n |
Simple_repeat |
| scaffold3425 |
23158 |
23523 |
+ |
RS10272 |
Unspecified |
| scaffold3425 |
23605 |
23622 |
+ |
(A)n |
Simple_repeat |
| scaffold3425 |
24639 |
25017 |
+ |
RS5257 |
Unspecified |
| scaffold3425 |
24889 |
25041 |
- |
RS4189 |
Unspecified |
| scaffold3425 |
25548 |
25607 |
+ |
(CTGTTG)n |
Simple_repeat |
| scaffold3425 |
26035 |
26122 |
+ |
RS286 |
Unspecified |
| scaffold3425 |
26212 |
26259 |
+ |
(T)n |
Simple_repeat |
| scaffold3425 |
26572 |
26629 |
+ |
RS911 |
Unspecified |
| scaffold3425 |
27066 |
27190 |
- |
Ogre-VP1_I-int |
LTR/Gypsy |
| scaffold3425 |
27865 |
27996 |
- |
Ogre-PT1_I-int |
LTR/Gypsy |
| scaffold3425 |
30858 |
31786 |
+ |
PL129 |
Unspecified |
| scaffold3425 |
30972 |
32537 |
+ |
RS1879 |
Unspecified |
| scaffold3425 |
32114 |
32599 |
- |
PL810 |
Unspecified |
| scaffold3425 |
32928 |
32970 |
- |
Gypsy-48_Mad-I |
LTR/Gypsy |
| scaffold3425 |
33143 |
33168 |
+ |
(A)n |
Simple_repeat |
| scaffold3425 |
33171 |
33202 |
+ |
(CTCCAA)n |
Simple_repeat |
| scaffold3425 |
33543 |
33642 |
- |
Ogre-MT3_I-int |
LTR/Gypsy |
| scaffold3425 |
34287 |
34369 |
+ |
ATCopia24I |
LTR/Copia |
| scaffold3425 |
35564 |
35587 |
+ |
(CAA)n |
Simple_repeat |
| scaffold3425 |
36495 |
39480 |
- |
Gypsy18-PTR_I-int |
LTR/Gypsy |
| scaffold3425 |
39826 |
40525 |
- |
Gypsy-16_Mad-I |
LTR/Gypsy |
| scaffold3425 |
41198 |
41424 |
- |
Gypsy18-PTR_I-int |
LTR/Gypsy |
| scaffold3425 |
41601 |
42181 |
- |
Gypsy18-PTR_I-int |
LTR/Gypsy |
| scaffold3425 |
42715 |
42745 |
+ |
(GTCATA)n |
Simple_repeat |
| scaffold3425 |
42944 |
43106 |
+ |
RS3041 |
Unspecified |
| scaffold3425 |
43167 |
43263 |
+ |
(AACA)n |
Simple_repeat |
| scaffold3425 |
43277 |
43582 |
- |
RS785 |
Unspecified |
| scaffold3425 |
43447 |
44802 |
+ |
RS602 |
Unspecified |
| scaffold3425 |
45686 |
45708 |
+ |
(AAC)n |
Simple_repeat |
| scaffold3425 |
46656 |
46696 |
+ |
(CAACTAA)n |
Simple_repeat |
| scaffold3425 |
46839 |
46932 |
- |
RS9204 |
Unspecified |
| scaffold3425 |
46928 |
46982 |
- |
RS9204 |
Unspecified |
| scaffold3425 |
47069 |
47182 |
- |
RS9204 |
Unspecified |
| scaffold3425 |
49000 |
49051 |
+ |
(ATGA)n |
Simple_repeat |
| scaffold3425 |
50758 |
50799 |
+ |
(TTTTCAA)n |
Simple_repeat |
| scaffold3425 |
51836 |
51867 |
+ |
A-rich |
Low_complexity |
| scaffold3425 |
52662 |
52775 |
- |
RS9204 |
Unspecified |
| scaffold3425 |
53783 |
53839 |
+ |
(TCAATT)n |
Simple_repeat |
| scaffold3425 |
53928 |
53961 |
+ |
A-rich |
Low_complexity |
| scaffold3425 |
54222 |
54259 |
+ |
(TGTTA)n |
Simple_repeat |
| scaffold3425 |
54357 |
54409 |
+ |
A-rich |
Low_complexity |
| scaffold3425 |
54413 |
54780 |
+ |
RS8 |
Unspecified |
| scaffold3425 |
55324 |
55836 |
+ |
LINE |
LINE(TransposonPSI) |
| scaffold3425 |
56958 |
57028 |
- |
RS223 |
Unspecified |
| scaffold3425 |
57333 |
57722 |
+ |
RS234 |
Unspecified |
| scaffold3425 |
58215 |
58258 |
+ |
(TA)n |
Simple_repeat |
| scaffold3425 |
58293 |
58404 |
- |
RS356 |
Unspecified |
| scaffold3425 |
58404 |
58865 |
+ |
RS395 |
Unspecified |
| scaffold3425 |
59805 |
59860 |
- |
Gypsy-9_Mad-I |
LTR/Gypsy |
| scaffold3425 |
60592 |
60645 |
+ |
(T)n |
Simple_repeat |
| scaffold3425 |
60720 |
61297 |
- |
PL829 |
Unspecified |
| scaffold3425 |
61356 |
62196 |
+ |
RS8399 |
Unspecified |
| scaffold3425 |
63522 |
63811 |
- |
DIASPORA_I-int |
LTR/Gypsy |
| scaffold3425 |
63812 |
64160 |
+ |
RS10311 |
Unspecified |
| scaffold3425 |
64178 |
64238 |
+ |
A-rich |
Low_complexity |
| scaffold3425 |
64472 |
65486 |
- |
Gypsy-137_GM-I |
LTR/Gypsy |
| scaffold3425 |
65895 |
65937 |
+ |
A-rich |
Low_complexity |
| scaffold3425 |
66598 |
66959 |
- |
Gypsy-16_Mad-I |
LTR/Gypsy |
| scaffold3425 |
67089 |
67163 |
+ |
(CTCTTC)n |
Simple_repeat |
| scaffold3425 |
67980 |
68364 |
- |
Gypsy18-PTR_I-int |
LTR/Gypsy |
| scaffold3425 |
68633 |
68784 |
+ |
RS2782 |
Unspecified |
| scaffold3425 |
69373 |
69428 |
+ |
(AATCAAT)n |
Simple_repeat |
| scaffold3425 |
69760 |
70100 |
+ |
RS4408 |
Unspecified |
| scaffold3425 |
70100 |
70258 |
+ |
RS11189 |
Unspecified |
| scaffold3425 |
70261 |
70878 |
+ |
GA-rich |
Low_complexity |
| scaffold3425 |
70820 |
70878 |
+ |
GA-rich |
Low_complexity |
| scaffold3425 |
70934 |
71282 |
+ |
RS260 |
Unspecified |
| scaffold3425 |
72312 |
72382 |
+ |
(TTATAAG)n |
Simple_repeat |
| scaffold3425 |
72721 |
72835 |
+ |
RS1460 |
Unspecified |
| scaffold3425 |
72838 |
74634 |
+ |
RIRE1_I-int |
LTR/Copia |
| scaffold3425 |
74201 |
74634 |
+ |
RIRE1_I-int |
LTR/Copia |
| scaffold3425 |
74643 |
74816 |
- |
RS233 |
Unspecified |
| scaffold3425 |
74662 |
74823 |
+ |
RS2719 |
Unspecified |
| scaffold3425 |
74813 |
75505 |
+ |
TY1_Copia |
TY1_Copia(TransposonPSI) |
| scaffold3425 |
74909 |
75504 |
+ |
RIRE1_I-int |
LTR/Copia |
| scaffold3425 |
75516 |
75639 |
+ |
(AAGTAT)n |
Simple_repeat |
| scaffold3425 |
75647 |
75703 |
+ |
(TGAATAG)n |
Simple_repeat |
| scaffold3425 |
75647 |
76127 |
+ |
(TGAATAG)n |
Simple_repeat |
| scaffold3425 |
75689 |
76127 |
+ |
RS75 |
Unspecified |
| scaffold3425 |
76129 |
76202 |
- |
PL847 |
Unspecified |
| scaffold3425 |
76405 |
77760 |
- |
RS2 |
Unspecified |
| scaffold3425 |
76638 |
78137 |
- |
RS30 |
Unspecified |
| scaffold3425 |
77658 |
78211 |
- |
PL423 |
Unspecified |
| scaffold3425 |
78870 |
79691 |
+ |
gypsy |
gypsy(TransposonPSI) |
| scaffold3425 |
79189 |
79214 |
+ |
(AGA)n |
Simple_repeat |
| scaffold3425 |
79832 |
79916 |
+ |
Gypsy-6_CP-I |
LTR/Gypsy |
| scaffold3425 |
80102 |
81461 |
+ |
Gypsy-6_CP-I |
LTR/Gypsy |
| scaffold3425 |
81670 |
82149 |
+ |
Gypsy-6_CP-I |
LTR/Gypsy |
| scaffold3425 |
82144 |
82739 |
+ |
PL324 |
Unspecified |
| scaffold3425 |
82745 |
83626 |
- |
RS360 |
Unspecified |
| scaffold3425 |
83672 |
84791 |
- |
RS360 |
Unspecified |
| scaffold3425 |
84846 |
85182 |
- |
RS695 |
Unspecified |
| scaffold3425 |
87217 |
87326 |
- |
PL267 |
Unspecified |
| scaffold3425 |
87336 |
87417 |
+ |
(AGGCTC)n |
Simple_repeat |
| scaffold3425 |
88553 |
88625 |
+ |
(TTTTGTT)n |
Simple_repeat |
| scaffold3425 |
88952 |
88988 |
+ |
(GTTTTG)n |
Simple_repeat |
| scaffold3425 |
90028 |
90891 |
- |
RS822 |
Unspecified |
| scaffold3425 |
90790 |
91044 |
- |
RS741 |
Unspecified |
| scaffold3425 |
91047 |
91119 |
+ |
(AATGT)n |
Simple_repeat |
| scaffold3425 |
91228 |
91263 |
+ |
(T)n |
Simple_repeat |
| scaffold3425 |
91262 |
91324 |
+ |
RS159 |
Unspecified |
| scaffold3425 |
91262 |
91307 |
+ |
RS1618 |
Unspecified |