scaffold346 Repeat List
| genome |
start |
end |
strand |
repeat-name |
repeat-class |
| scaffold346 |
1 |
146 |
- |
RS2218 |
Unspecified |
| scaffold346 |
210 |
255 |
+ |
A-rich |
Low_complexity |
| scaffold346 |
828 |
1361 |
+ |
Copia-85_ST-I |
LTR/Copia |
| scaffold346 |
1454 |
1581 |
+ |
Copia-85_ST-I |
LTR/Copia |
| scaffold346 |
6005 |
6314 |
+ |
RS780 |
Unspecified |
| scaffold346 |
6315 |
6353 |
- |
PL744 |
Unspecified |
| scaffold346 |
6681 |
10228 |
+ |
Copia-85_ST-I |
LTR/Copia |
| scaffold346 |
10267 |
10485 |
+ |
RS524 |
Unspecified |
| scaffold346 |
10506 |
10576 |
+ |
(ATG)n |
Simple_repeat |
| scaffold346 |
11187 |
11225 |
+ |
(T)n |
Simple_repeat |
| scaffold346 |
11226 |
11231 |
+ |
(TTTTTA)n |
Simple_repeat |
| scaffold346 |
13602 |
13629 |
+ |
(TTATT)n |
Simple_repeat |
| scaffold346 |
14014 |
14099 |
+ |
(T)n |
Simple_repeat |
| scaffold346 |
14100 |
14129 |
+ |
(ATT)n |
Simple_repeat |
| scaffold346 |
14326 |
14361 |
+ |
(CTTGTA)n |
Simple_repeat |
| scaffold346 |
14496 |
14557 |
+ |
(TGTTC)n |
Simple_repeat |
| scaffold346 |
17883 |
17899 |
+ |
(AC)n |
Simple_repeat |
| scaffold346 |
20177 |
20246 |
+ |
A-rich |
Low_complexity |
| scaffold346 |
20276 |
20321 |
+ |
(AAT)n |
Simple_repeat |
| scaffold346 |
20450 |
20470 |
+ |
(A)n |
Simple_repeat |
| scaffold346 |
22123 |
22139 |
+ |
(T)n |
Simple_repeat |
| scaffold346 |
24122 |
24140 |
+ |
(T)n |
Simple_repeat |
| scaffold346 |
24319 |
24365 |
+ |
(TTTTAGT)n |
Simple_repeat |
| scaffold346 |
27562 |
27605 |
+ |
(CTCTTC)n |
Simple_repeat |
| scaffold346 |
29886 |
29924 |
+ |
(TTTTC)n |
Simple_repeat |
| scaffold346 |
31682 |
31711 |
+ |
(ATAAA)n |
Simple_repeat |
| scaffold346 |
32458 |
32494 |
+ |
(A)n |
Simple_repeat |
| scaffold346 |
34379 |
34408 |
+ |
(A)n |
Simple_repeat |
| scaffold346 |
36862 |
36920 |
+ |
(GCG)n |
Simple_repeat |
| scaffold346 |
37304 |
37327 |
+ |
(A)n |
Simple_repeat |
| scaffold346 |
37383 |
37462 |
+ |
(TTCATC)n |
Simple_repeat |
| scaffold346 |
37570 |
37627 |
+ |
(TATCAT)n |
Simple_repeat |
| scaffold346 |
38829 |
39790 |
- |
ATIS112A |
DNA/PIF-Harbinger |
| scaffold346 |
39928 |
40082 |
+ |
RS4551 |
Unspecified |
| scaffold346 |
40768 |
40798 |
+ |
(TCTTT)n |
Simple_repeat |
| scaffold346 |
42834 |
43038 |
+ |
RS5074 |
Unspecified |
| scaffold346 |
43295 |
43324 |
+ |
(T)n |
Simple_repeat |
| scaffold346 |
43639 |
43798 |
+ |
RS6560 |
Unspecified |
| scaffold346 |
44254 |
44670 |
+ |
MuDR_A_B |
MuDR_A_B(TransposonPSI) |
| scaffold346 |
45422 |
45477 |
+ |
(AATCAAT)n |
Simple_repeat |
| scaffold346 |
45621 |
45653 |
+ |
A-rich |
Low_complexity |
| scaffold346 |
45807 |
46089 |
- |
RS916 |
Unspecified |
| scaffold346 |
46090 |
46207 |
- |
RS5120 |
Unspecified |
| scaffold346 |
47176 |
47289 |
- |
cacta |
cacta(TransposonPSI) |
| scaffold346 |
48069 |
48098 |
+ |
(ATTAAC)n |
Simple_repeat |
| scaffold346 |
48594 |
48641 |
+ |
(TATGATA)n |
Simple_repeat |
| scaffold346 |
49461 |
49605 |
- |
Ogre-MT3_I-int |
LTR/Gypsy |
| scaffold346 |
49664 |
49722 |
- |
DIASPORA_I-int |
LTR/Gypsy |
| scaffold346 |
50633 |
50671 |
+ |
(T)n |
Simple_repeat |
| scaffold346 |
50672 |
50695 |
+ |
(GAAA)n |
Simple_repeat |
| scaffold346 |
53420 |
53622 |
- |
RS916 |
Unspecified |
| scaffold346 |
54521 |
54885 |
+ |
RS1675 |
Unspecified |
| scaffold346 |
54864 |
54904 |
+ |
PL347 |
Unspecified |
| scaffold346 |
56939 |
57011 |
+ |
(AAT)n |
Simple_repeat |
| scaffold346 |
57106 |
57169 |
+ |
(ATA)n |
Simple_repeat |
| scaffold346 |
58037 |
58064 |
+ |
(T)n |
Simple_repeat |
| scaffold346 |
60970 |
61057 |
+ |
A-rich |
Low_complexity |
| scaffold346 |
61811 |
61986 |
+ |
(AACTG)n |
Simple_repeat |
| scaffold346 |
62053 |
62093 |
+ |
(AT)n |
Simple_repeat |
| scaffold346 |
62114 |
65346 |
+ |
EnSpm-11_STu |
DNA/CMC-EnSpm |
| scaffold346 |
66625 |
66641 |
+ |
(T)n |
Simple_repeat |
| scaffold346 |
66988 |
67227 |
+ |
cacta |
cacta(TransposonPSI) |
| scaffold346 |
67341 |
67526 |
+ |
cacta |
cacta(TransposonPSI) |
| scaffold346 |
68439 |
68473 |
+ |
A-rich |
Low_complexity |
| scaffold346 |
71458 |
71500 |
+ |
A-rich |
Low_complexity |
| scaffold346 |
72980 |
73012 |
+ |
(AATAAC)n |
Simple_repeat |
| scaffold346 |
73120 |
73357 |
+ |
RS9384 |
Unspecified |
| scaffold346 |
73466 |
73512 |
+ |
(TTA)n |
Simple_repeat |
| scaffold346 |
74859 |
74919 |
+ |
(TTTTT)n |
Simple_repeat |
| scaffold346 |
75659 |
75701 |
+ |
A-rich |
Low_complexity |
| scaffold346 |
76111 |
76820 |
- |
PIGY-I_PS |
LTR/Gypsy |
| scaffold346 |
77882 |
78058 |
- |
PIGY-LTR_PS |
LTR/Gypsy |
| scaffold346 |
78625 |
78673 |
+ |
A-rich |
Low_complexity |
| scaffold346 |
78700 |
79065 |
- |
PL5 |
Unspecified |
| scaffold346 |
79065 |
79263 |
+ |
PL857 |
Unspecified |
| scaffold346 |
79252 |
79630 |
+ |
PL664 |
Unspecified |
| scaffold346 |
79379 |
79734 |
- |
PL664 |
Unspecified |
| scaffold346 |
79443 |
79841 |
- |
PL664 |
Unspecified |
| scaffold346 |
79762 |
80092 |
+ |
PL664 |
Unspecified |
| scaffold346 |
80218 |
80311 |
+ |
(ACA)n |
Simple_repeat |
| scaffold346 |
80565 |
80605 |
+ |
(CATAA)n |
Simple_repeat |
| scaffold346 |
80994 |
81086 |
+ |
Copia-1_ST-LTR |
LTR/Copia |
| scaffold346 |
81164 |
81299 |
+ |
Copia-1_ST-LTR |
LTR/Copia |
| scaffold346 |
81478 |
81603 |
- |
EnSpm-7_STu |
DNA/CMC-EnSpm |
| scaffold346 |
81783 |
81864 |
+ |
Copia-1_ST-LTR |
LTR/Copia |
| scaffold346 |
82188 |
82215 |
+ |
(AAC)n |
Simple_repeat |
| scaffold346 |
82384 |
82542 |
+ |
L1-4_VC |
LINE/L1 |
| scaffold346 |
83423 |
83522 |
+ |
(GAT)n |
Simple_repeat |
| scaffold346 |
83589 |
83813 |
+ |
RS2214 |
Unspecified |
| scaffold346 |
84003 |
84193 |
- |
ENSPM-6_ZM |
DNA/CMC-EnSpm |
| scaffold346 |
84124 |
84386 |
+ |
ENSPM-6_ZM |
DNA/CMC-EnSpm |
| scaffold346 |
84832 |
84896 |
+ |
(AATAGA)n |
Simple_repeat |
| scaffold346 |
85733 |
85800 |
- |
Gypsy-9_Mad-I |
LTR/Gypsy |
| scaffold346 |
87199 |
87242 |
- |
Gypsy-9_Mad-I |
LTR/Gypsy |
| scaffold346 |
89077 |
89138 |
+ |
(AAC)n |
Simple_repeat |
| scaffold346 |
89220 |
89311 |
+ |
(TATCCGA)n |
Simple_repeat |
| scaffold346 |
89884 |
90070 |
- |
hAT-17_ZM |
DNA/hAT-Ac |
| scaffold346 |
91227 |
92790 |
+ |
Gypsy-52_Mad-I |
LTR/Gypsy |
| scaffold346 |
93211 |
93939 |
+ |
Gypsy-52_Mad-I |
LTR/Gypsy |
| scaffold346 |
94109 |
94235 |
+ |
Gypsy-52_Mad-I |
LTR/Gypsy |
| scaffold346 |
94320 |
94402 |
+ |
ATGP5A_I-int |
LTR/Gypsy |
| scaffold346 |
94403 |
94415 |
+ |
Copia-90_Mad-I |
LTR/Copia |
| scaffold346 |
94707 |
94865 |
+ |
RS1094 |
Unspecified |
| scaffold346 |
94741 |
95118 |
+ |
RS1094 |
Unspecified |
| scaffold346 |
94990 |
95142 |
+ |
RS13104 |
Unspecified |
| scaffold346 |
98629 |
99186 |
- |
PL569 |
Unspecified |
| scaffold346 |
101213 |
101246 |
+ |
(TTAAAAT)n |
Simple_repeat |
| scaffold346 |
104823 |
104846 |
+ |
(AACA)n |
Simple_repeat |
| scaffold346 |
106241 |
106322 |
+ |
(CAGCA)n |
Simple_repeat |
| scaffold346 |
106325 |
106354 |
+ |
(GGCA)n |
Simple_repeat |
| scaffold346 |
107503 |
107903 |
+ |
PL570 |
Unspecified |
| scaffold346 |
108727 |
109005 |
+ |
RS228 |
Unspecified |
| scaffold346 |
109059 |
109902 |
- |
PL196 |
Unspecified |
| scaffold346 |
109894 |
110404 |
+ |
PL816 |
Unspecified |
| scaffold346 |
110570 |
110656 |
+ |
(CACTAAG)n |
Simple_repeat |
| scaffold346 |
111445 |
111499 |
+ |
(TATATAT)n |
Simple_repeat |
| scaffold346 |
111548 |
111838 |
- |
RIRE1_I-int |
LTR/Copia |
| scaffold346 |
169115 |
169530 |
- |
RS254 |
Unspecified |