scaffold34882 Repeat List
| genome |
start |
end |
strand |
repeat-name |
repeat-class |
| scaffold34882 |
17 |
38 |
+ |
(T)n |
Simple_repeat |
| scaffold34882 |
467 |
703 |
- |
RS2985 |
Unspecified |
| scaffold34882 |
497 |
1887 |
- |
RS2918 |
Unspecified |
| scaffold34882 |
1887 |
3207 |
+ |
RS1686 |
Unspecified |
| scaffold34882 |
3905 |
3960 |
+ |
MEGY-I_MT |
LTR/Gypsy |
| scaffold34882 |
4008 |
4261 |
+ |
MEGY-I_MT |
LTR/Gypsy |
| scaffold34882 |
4420 |
5074 |
- |
RS1207 |
Unspecified |
| scaffold34882 |
4515 |
5172 |
- |
RS661 |
Unspecified |
| scaffold34882 |
5287 |
5375 |
- |
RS5965 |
Unspecified |
| scaffold34882 |
5381 |
5411 |
+ |
(GTG)n |
Simple_repeat |
| scaffold34882 |
5558 |
6099 |
+ |
MEGY-I_MT |
LTR/Gypsy |
| scaffold34882 |
6334 |
6371 |
+ |
(TGA)n |
Simple_repeat |
| scaffold34882 |
6607 |
6649 |
+ |
(TTTGCTT)n |
Simple_repeat |
| scaffold34882 |
7401 |
7966 |
+ |
PIGY-I_PS |
LTR/Gypsy |
| scaffold34882 |
8424 |
8479 |
+ |
(TGCTT)n |
Simple_repeat |
| scaffold34882 |
9212 |
9280 |
+ |
A-rich |
Low_complexity |
| scaffold34882 |
9887 |
9946 |
+ |
ATHILA6C_I-int |
LTR/Gypsy |
| scaffold34882 |
10996 |
11087 |
+ |
(ATACACT)n |
Simple_repeat |
| scaffold34882 |
14108 |
14264 |
+ |
PL522 |
Unspecified |
| scaffold34882 |
14610 |
14634 |
+ |
(TAA)n |
Simple_repeat |
| scaffold34882 |
14632 |
15197 |
+ |
(TATCGTT)n |
Simple_repeat |
| scaffold34882 |
15130 |
15197 |
+ |
(TATCGTT)n |
Simple_repeat |
| scaffold34882 |
15301 |
15465 |
- |
RS1174 |
Unspecified |
| scaffold34882 |
15344 |
15486 |
- |
RS1132 |
Unspecified |
| scaffold34882 |
15651 |
15959 |
- |
RS1174 |
Unspecified |
| scaffold34882 |
15974 |
16067 |
- |
RS942 |
Unspecified |
| scaffold34882 |
16034 |
16145 |
- |
RS942 |
Unspecified |
| scaffold34882 |
16117 |
16223 |
- |
RS942 |
Unspecified |
| scaffold34882 |
16195 |
16301 |
- |
RS942 |
Unspecified |
| scaffold34882 |
16273 |
16370 |
- |
RS942 |
Unspecified |
| scaffold34882 |
16398 |
16497 |
- |
RS942 |
Unspecified |
| scaffold34882 |
16469 |
16575 |
- |
RS942 |
Unspecified |
| scaffold34882 |
16547 |
16644 |
- |
RS942 |
Unspecified |
| scaffold34882 |
16688 |
16742 |
+ |
(AATAA)n |
Simple_repeat |
| scaffold34882 |
16764 |
16921 |
- |
RS1174 |
Unspecified |
| scaffold34882 |
16807 |
16954 |
- |
RS1132 |
Unspecified |
| scaffold34882 |
16856 |
17211 |
- |
RS2720 |
Unspecified |
| scaffold34882 |
17227 |
17260 |
- |
RS1132 |
Unspecified |
| scaffold34882 |
17238 |
17291 |
- |
RS1132 |
Unspecified |
| scaffold34882 |
17323 |
17915 |
- |
RS1132 |
Unspecified |
| scaffold34882 |
19520 |
19591 |
+ |
A-rich |
Low_complexity |
| scaffold34882 |
20339 |
20362 |
+ |
(A)n |
Simple_repeat |
| scaffold34882 |
20546 |
20655 |
- |
RS1127 |
Unspecified |
| scaffold34882 |
20898 |
21119 |
- |
Copia-70_VV-I |
LTR/Copia |
| scaffold34882 |
21442 |
21528 |
- |
Copia-22_ST-I |
LTR/Copia |
| scaffold34882 |
21527 |
21651 |
- |
Copia-22_ST-I |
LTR/Copia |
| scaffold34882 |
22115 |
22507 |
- |
Copia-22_ST-I |
LTR/Copia |
| scaffold34882 |
22539 |
22645 |
+ |
RS1127 |
Unspecified |
| scaffold34882 |
22641 |
22843 |
- |
RS145 |
Unspecified |
| scaffold34882 |
23010 |
23089 |
+ |
(TTCAG)n |
Simple_repeat |
| scaffold34882 |
23112 |
23214 |
+ |
(TAT)n |
Simple_repeat |
| scaffold34882 |
23332 |
23394 |
+ |
(TATA)n |
Simple_repeat |
| scaffold34882 |
23398 |
27006 |
- |
COP2_I_MT-int |
LTR/Copia |
| scaffold34882 |
27325 |
27927 |
- |
COP2_I_MT-int |
LTR/Copia |
| scaffold34882 |
27928 |
28055 |
+ |
(A)n |
Simple_repeat |
| scaffold34882 |
28018 |
28055 |
+ |
(A)n |
Simple_repeat |
| scaffold34882 |
28056 |
28264 |
- |
COP2_I_MT-int |
LTR/Copia |
| scaffold34882 |
28325 |
28616 |
+ |
LTR-1_SBi-LTR |
LTR |
| scaffold34882 |
28617 |
28753 |
- |
COP2_I_MT-int |
LTR/Copia |
| scaffold34882 |
28754 |
28840 |
+ |
(CGGCC)n |
Simple_repeat |
| scaffold34882 |
29256 |
29349 |
+ |
A-rich |
Low_complexity |
| scaffold34882 |
29576 |
29644 |
- |
COP2_I_MT-int |
LTR/Copia |
| scaffold34882 |
29766 |
29989 |
+ |
RS4647 |
Unspecified |
| scaffold34882 |
29865 |
30038 |
+ |
RS4647 |
Unspecified |
| scaffold34882 |
30282 |
30314 |
+ |
(TTTA)n |
Simple_repeat |
| scaffold34882 |
30384 |
30405 |
+ |
(T)n |
Simple_repeat |
| scaffold34882 |
30711 |
30737 |
+ |
(TATTAC)n |
Simple_repeat |
| scaffold34882 |
30738 |
30802 |
+ |
(TTG)n |
Simple_repeat |
| scaffold34882 |
30804 |
31093 |
+ |
(TTA)n |
Simple_repeat |
| scaffold34882 |
31094 |
31112 |
+ |
(TATTAC)n |
Simple_repeat |
| scaffold34882 |
31644 |
31694 |
+ |
A-rich |
Low_complexity |
| scaffold34882 |
31737 |
31772 |
+ |
(CAAATC)n |
Simple_repeat |
| scaffold34882 |
32081 |
32116 |
+ |
(A)n |
Simple_repeat |
| scaffold34882 |
33450 |
33503 |
+ |
(TTTTCAA)n |
Simple_repeat |
| scaffold34882 |
33810 |
34417 |
- |
RS1868 |
Unspecified |
| scaffold34882 |
34699 |
34826 |
- |
PL683 |
Unspecified |
| scaffold34882 |
34714 |
35289 |
- |
PL8 |
Unspecified |
| scaffold34882 |
35290 |
35466 |
- |
RS1298 |
Unspecified |
| scaffold34882 |
35480 |
35559 |
+ |
(ATTAAG)n |
Simple_repeat |
| scaffold34882 |
37285 |
38308 |
- |
L1-1_GM |
LINE/L1 |
| scaffold34882 |
39085 |
39380 |
- |
PL438 |
Unspecified |
| scaffold34882 |
39510 |
39533 |
+ |
(TCA)n |
Simple_repeat |
| scaffold34882 |
39688 |
39719 |
+ |
(TCT)n |
Simple_repeat |
| scaffold34882 |
40508 |
40543 |
+ |
(TCGTTT)n |
Simple_repeat |
| scaffold34882 |
41860 |
41882 |
+ |
(A)n |
Simple_repeat |
| scaffold34882 |
42584 |
42622 |
+ |
G-rich |
Low_complexity |
| scaffold34882 |
45061 |
45125 |
+ |
(TATTAAT)n |
Simple_repeat |
| scaffold34882 |
45301 |
45333 |
+ |
(A)n |
Simple_repeat |
| scaffold34882 |
45556 |
45589 |
+ |
(T)n |
Simple_repeat |
| scaffold34882 |
46031 |
46059 |
+ |
(TTTTTGT)n |
Simple_repeat |
| scaffold34882 |
46060 |
46078 |
+ |
(T)n |
Simple_repeat |
| scaffold34882 |
46079 |
46102 |
+ |
(A)n |
Simple_repeat |
| scaffold34882 |
46426 |
46876 |
- |
PL569 |
Unspecified |
| scaffold34882 |
47966 |
48018 |
+ |
(AAC)n |
Simple_repeat |
| scaffold34882 |
49182 |
50742 |
+ |
Gypsy-36_BD-I |
LTR/Gypsy |
| scaffold34882 |
51206 |
52099 |
+ |
ltr_Roo |
ltr_Roo(TransposonPSI) |
| scaffold34882 |
51224 |
51905 |
+ |
Gypsy-5_Pru-I |
LTR/Gypsy |
| scaffold34882 |
52280 |
52348 |
+ |
ATGP5A_I-int |
LTR/Gypsy |
| scaffold34882 |
52349 |
52374 |
+ |
Copia-90_Mad-I |
LTR/Copia |
| scaffold34882 |
52651 |
52852 |
+ |
PL827 |
Unspecified |
| scaffold34882 |
52651 |
52808 |
+ |
RS314 |
Unspecified |
| scaffold34882 |
52691 |
52869 |
+ |
PL827 |
Unspecified |
| scaffold34882 |
52744 |
52899 |
- |
RS7064 |
Unspecified |
| scaffold34882 |
52775 |
53126 |
+ |
RS1094 |
Unspecified |
| scaffold34882 |
53001 |
53354 |
+ |
RS1094 |
Unspecified |
| scaffold34882 |
53229 |
53536 |
+ |
RS1094 |
Unspecified |
| scaffold34882 |
53710 |
54024 |
- |
RS487 |
Unspecified |
| scaffold34882 |
57268 |
57718 |
- |
PL569 |
Unspecified |
| scaffold34882 |
57844 |
57899 |
+ |
LTR-2_MX-LTR |
LTR |
| scaffold34882 |
58688 |
58746 |
+ |
RS1180 |
Unspecified |
| scaffold34882 |
58748 |
59071 |
+ |
RS4116 |
Unspecified |
| scaffold34882 |
59248 |
59377 |
+ |
RS6434 |
Unspecified |
| scaffold34882 |
59792 |
59860 |
+ |
A-rich |
Low_complexity |
| scaffold34882 |
60043 |
60108 |
+ |
(AATC)n |
Simple_repeat |
| scaffold34882 |
60887 |
60916 |
+ |
(TTTCT)n |
Simple_repeat |
| scaffold34882 |
61563 |
61610 |
+ |
(A)n |
Simple_repeat |
| scaffold34882 |
62582 |
62654 |
+ |
(A)n |
Simple_repeat |
| scaffold34882 |
62956 |
62988 |
+ |
(TAG)n |
Simple_repeat |
| scaffold34882 |
63147 |
63259 |
- |
RS8152 |
Unspecified |
| scaffold34882 |
63342 |
63434 |
+ |
(TTTTA)n |
Simple_repeat |
| scaffold34882 |
63474 |
63562 |
- |
PL556 |
Unspecified |
| scaffold34882 |
63592 |
63666 |
+ |
DNA-2_SBi |
DNA |
| scaffold34882 |
63973 |
63998 |
+ |
(A)n |
Simple_repeat |
| scaffold34882 |
64485 |
64715 |
+ |
(ATT)n |
Simple_repeat |
| scaffold34882 |
64629 |
64715 |
+ |
(ATT)n |
Simple_repeat |
| scaffold34882 |
64878 |
64927 |
+ |
(ATGG)n |
Simple_repeat |
| scaffold34882 |
65150 |
65175 |
+ |
(T)n |
Simple_repeat |
| scaffold34882 |
65452 |
65503 |
+ |
A-rich |
Low_complexity |
| scaffold34882 |
65592 |
65618 |
+ |
(AAAT)n |
Simple_repeat |
| scaffold34882 |
65627 |
65800 |
+ |
RS10029 |
Unspecified |
| scaffold34882 |
65895 |
65931 |
+ |
(T)n |
Simple_repeat |
| scaffold34882 |
65981 |
66065 |
+ |
(TTAAT)n |
Simple_repeat |
| scaffold34882 |
67662 |
67711 |
- |
LINE1-38_SBi |
LINE/L1 |
| scaffold34882 |
67894 |
68132 |
+ |
RS1705 |
Unspecified |
| scaffold34882 |
68135 |
68198 |
+ |
(CAACAAC)n |
Simple_repeat |
| scaffold34882 |
68483 |
68511 |
+ |
(TTTTGA)n |
Simple_repeat |
| scaffold34882 |
69443 |
69513 |
+ |
(TTATAT)n |
Simple_repeat |
| scaffold34882 |
69893 |
70130 |
- |
RS4199 |
Unspecified |
| scaffold34882 |
69933 |
70286 |
+ |
RS8518 |
Unspecified |
| scaffold34882 |
70432 |
70743 |
- |
RS899 |
Unspecified |
| scaffold34882 |
70941 |
71001 |
+ |
(A)n |
Simple_repeat |
| scaffold34882 |
71095 |
71376 |
- |
RS7787 |
Unspecified |
| scaffold34882 |
71387 |
71458 |
- |
RS7787 |
Unspecified |
| scaffold34882 |
71467 |
71511 |
- |
RS7787 |
Unspecified |
| scaffold34882 |
71659 |
72000 |
- |
RS8207 |
Unspecified |
| scaffold34882 |
72562 |
72953 |
+ |
(T)n |
Simple_repeat |
| scaffold34882 |
72562 |
72586 |
+ |
(T)n |
Simple_repeat |
| scaffold34882 |
72575 |
72953 |
- |
RS257 |
Unspecified |
| scaffold34882 |
73018 |
73552 |
+ |
(T)n |
Simple_repeat |
| scaffold34882 |
73534 |
73552 |
+ |
(T)n |
Simple_repeat |
| scaffold34882 |
73600 |
73621 |
+ |
(T)n |
Simple_repeat |
| scaffold34882 |
73985 |
74344 |
+ |
PL330 |
Unspecified |
| scaffold34882 |
74954 |
74974 |
+ |
(T)n |
Simple_repeat |
| scaffold34882 |
75366 |
75524 |
- |
RS8728 |
Unspecified |
| scaffold34882 |
75610 |
75655 |
+ |
A-rich |
Low_complexity |
| scaffold34882 |
76245 |
76338 |
+ |
(ATATACC)n |
Simple_repeat |
| scaffold34882 |
78070 |
78259 |
+ |
RS10669 |
Unspecified |
| scaffold34882 |
78277 |
78315 |
+ |
(T)n |
Simple_repeat |
| scaffold34882 |
78452 |
78473 |
+ |
(T)n |
Simple_repeat |
| scaffold34882 |
78546 |
78564 |
+ |
(A)n |
Simple_repeat |
| scaffold34882 |
78876 |
79025 |
+ |
(GTT)n |
Simple_repeat |
| scaffold34882 |
79680 |
79713 |
+ |
(CGGTCG)n |
Simple_repeat |
| scaffold34882 |
79991 |
80032 |
+ |
A-rich |
Low_complexity |
| scaffold34882 |
80556 |
81523 |
+ |
RS266 |
Unspecified |
| scaffold34882 |
81595 |
81650 |
+ |
A-rich |
Low_complexity |
| scaffold34882 |
82100 |
82434 |
+ |
RS976 |
Unspecified |
| scaffold34882 |
82463 |
82488 |
+ |
(ATA)n |
Simple_repeat |
| scaffold34882 |
82538 |
82588 |
+ |
(TTATG)n |
Simple_repeat |
| scaffold34882 |
82875 |
82923 |
+ |
(GTGTTCTTCA)n |
Simple_repeat |
| scaffold34882 |
84069 |
84200 |
- |
Gypsy-72-LTR_ZM |
LTR/Gypsy |
| scaffold34882 |
84232 |
84346 |
+ |
RS120 |
Unspecified |
| scaffold34882 |
84387 |
85023 |
- |
RS1129 |
Unspecified |
| scaffold34882 |
85098 |
85131 |
+ |
A-rich |
Low_complexity |
| scaffold34882 |
85484 |
85538 |
+ |
(CAATCAA)n |
Simple_repeat |
| scaffold34882 |
85539 |
85613 |
+ |
(TCA)n |
Simple_repeat |
| scaffold34882 |
85987 |
86021 |
+ |
(TGTGAA)n |
Simple_repeat |
| scaffold34882 |
86510 |
86619 |
+ |
(GCT)n |
Simple_repeat |
| scaffold34882 |
87451 |
87640 |
- |
RS5929 |
Unspecified |
| scaffold34882 |
88380 |
88414 |
+ |
(TGATTGT)n |
Simple_repeat |
| scaffold34882 |
90493 |
90517 |
+ |
(T)n |
Simple_repeat |
| scaffold34882 |
90825 |
90852 |
+ |
(T)n |
Simple_repeat |
| scaffold34882 |
91227 |
91264 |
+ |
(GT)n |
Simple_repeat |
| scaffold34882 |
91927 |
91955 |
+ |
(T)n |
Simple_repeat |
| scaffold34882 |
92706 |
92744 |
+ |
(A)n |
Simple_repeat |
| scaffold34882 |
96483 |
96603 |
+ |
RS620 |
Unspecified |
| scaffold34882 |
97838 |
98202 |
- |
RS504 |
Unspecified |
| scaffold34882 |
99593 |
99610 |
+ |
(T)n |
Simple_repeat |
| scaffold34882 |
100689 |
100717 |
+ |
(A)n |
Simple_repeat |
| scaffold34882 |
102114 |
102450 |
+ |
Copia-82_GM-I |
LTR/Copia |
| scaffold34882 |
103076 |
103353 |
- |
Copia-82_GM-I |
LTR/Copia |
| scaffold34882 |
103946 |
103984 |
+ |
(A)n |
Simple_repeat |
| scaffold34882 |
107723 |
107843 |
+ |
RS620 |
Unspecified |
| scaffold34882 |
109078 |
109442 |
- |
RS504 |
Unspecified |
| scaffold34882 |
110833 |
110850 |
+ |
(T)n |
Simple_repeat |
| scaffold34882 |
111929 |
111949 |
+ |
(A)n |
Simple_repeat |
| scaffold34882 |
113356 |
113692 |
+ |
Copia-82_GM-I |
LTR/Copia |
| scaffold34882 |
114318 |
115272 |
- |
Copia-32-I_VV |
LTR/Copia |
| scaffold34882 |
115272 |
115457 |
- |
ATCopia75_I-int |
LTR/Copia |
| scaffold34882 |
116024 |
116111 |
+ |
A-rich |
Low_complexity |
| scaffold34882 |
116828 |
116875 |
- |
MEGY-I_MT |
LTR/Gypsy |
| scaffold34882 |
118295 |
118351 |
+ |
A-rich |
Low_complexity |
| scaffold34882 |
118581 |
118669 |
+ |
(CATCAT)n |
Simple_repeat |
| scaffold34882 |
118823 |
119488 |
- |
MEGY-I_MT |
LTR/Gypsy |
| scaffold34882 |
119667 |
120019 |
+ |
RS6060 |
Unspecified |
| scaffold34882 |
120828 |
121136 |
- |
GYPSHAN_I_MT-int |
LTR/Gypsy |
| scaffold34882 |
121583 |
121621 |
+ |
(AACA)n |
Simple_repeat |
| scaffold34882 |
121651 |
122179 |
- |
PL64 |
Unspecified |