scaffold3546 Repeat List
| genome |
start |
end |
strand |
repeat-name |
repeat-class |
| scaffold3546 |
2 |
290 |
+ |
PL564 |
Unspecified |
| scaffold3546 |
292 |
586 |
+ |
PL491 |
Unspecified |
| scaffold3546 |
633 |
668 |
+ |
A-rich |
Low_complexity |
| scaffold3546 |
4457 |
4869 |
+ |
RS454 |
Unspecified |
| scaffold3546 |
5140 |
6265 |
+ |
gypsy |
gypsy(TransposonPSI) |
| scaffold3546 |
5140 |
5322 |
+ |
gypsy |
gypsy(TransposonPSI) |
| scaffold3546 |
5239 |
6265 |
- |
RS1819 |
Unspecified |
| scaffold3546 |
5964 |
6397 |
+ |
PL78 |
Unspecified |
| scaffold3546 |
6751 |
6787 |
+ |
A-rich |
Low_complexity |
| scaffold3546 |
7713 |
8337 |
+ |
PL219 |
Unspecified |
| scaffold3546 |
11005 |
11408 |
+ |
RS2904 |
Unspecified |
| scaffold3546 |
11006 |
11217 |
+ |
PL286 |
Unspecified |
| scaffold3546 |
11006 |
11325 |
+ |
RS4278 |
Unspecified |
| scaffold3546 |
11262 |
11887 |
- |
RS1210 |
Unspecified |
| scaffold3546 |
11996 |
12060 |
+ |
GA-rich |
Low_complexity |
| scaffold3546 |
12084 |
13473 |
+ |
RS1686 |
Unspecified |
| scaffold3546 |
14707 |
14751 |
+ |
(TGGTGA)n |
Simple_repeat |
| scaffold3546 |
14803 |
14845 |
+ |
(TTTCGGT)n |
Simple_repeat |
| scaffold3546 |
15267 |
15295 |
+ |
(TTATCA)n |
Simple_repeat |
| scaffold3546 |
15307 |
15344 |
+ |
(TTTCGTC)n |
Simple_repeat |
| scaffold3546 |
15348 |
15915 |
+ |
PL5 |
Unspecified |
| scaffold3546 |
16192 |
16230 |
+ |
(TTAATTT)n |
Simple_repeat |
| scaffold3546 |
16725 |
16764 |
+ |
(TTTA)n |
Simple_repeat |
| scaffold3546 |
18949 |
19248 |
- |
hAT |
hAT(TransposonPSI) |
| scaffold3546 |
19568 |
20383 |
+ |
Copia-13_EPa-I |
LTR/Copia |
| scaffold3546 |
19862 |
20383 |
+ |
Copia-13_EPa-I |
LTR/Copia |
| scaffold3546 |
20776 |
20811 |
+ |
(CCAA)n |
Simple_repeat |
| scaffold3546 |
20812 |
20827 |
+ |
(CCAAC)n |
Simple_repeat |
| scaffold3546 |
20860 |
21198 |
+ |
Copia-13_EPa-I |
LTR/Copia |
| scaffold3546 |
21500 |
22288 |
+ |
Copia-13_EPa-I |
LTR/Copia |
| scaffold3546 |
22656 |
24213 |
+ |
Copia-13_EPa-I |
LTR/Copia |
| scaffold3546 |
24211 |
24416 |
+ |
RS5466 |
Unspecified |
| scaffold3546 |
24871 |
24932 |
+ |
(ATA)n |
Simple_repeat |
| scaffold3546 |
32169 |
32313 |
- |
RS115 |
Unspecified |
| scaffold3546 |
32542 |
32588 |
+ |
(TCATGT)n |
Simple_repeat |
| scaffold3546 |
33344 |
33372 |
+ |
(ATG)n |
Simple_repeat |
| scaffold3546 |
33587 |
33614 |
+ |
(AAAT)n |
Simple_repeat |
| scaffold3546 |
34188 |
34581 |
+ |
Copia-31_GM-I |
LTR/Copia |
| scaffold3546 |
34597 |
34650 |
+ |
(TATAT)n |
Simple_repeat |
| scaffold3546 |
35599 |
35644 |
+ |
A-rich |
Low_complexity |
| scaffold3546 |
35882 |
35926 |
+ |
(T)n |
Simple_repeat |
| scaffold3546 |
35993 |
36037 |
+ |
(TTTTTTA)n |
Simple_repeat |
| scaffold3546 |
36507 |
36567 |
- |
RS3418 |
Unspecified |
| scaffold3546 |
36749 |
36783 |
+ |
(TTATAT)n |
Simple_repeat |
| scaffold3546 |
36980 |
37037 |
+ |
(AATAA)n |
Simple_repeat |
| scaffold3546 |
38365 |
38750 |
+ |
RS29 |
Unspecified |
| scaffold3546 |
39234 |
39297 |
+ |
(TTTGTA)n |
Simple_repeat |
| scaffold3546 |
39650 |
39718 |
+ |
A-rich |
Low_complexity |
| scaffold3546 |
40301 |
40348 |
+ |
(TTTAT)n |
Simple_repeat |
| scaffold3546 |
40855 |
40860 |
+ |
(TTGTTT)n |
Simple_repeat |
| scaffold3546 |
40861 |
40906 |
+ |
(TTGTT)n |
Simple_repeat |
| scaffold3546 |
40914 |
41044 |
+ |
(ATG)n |
Simple_repeat |
| scaffold3546 |
43535 |
43574 |
+ |
(AAGGTG)n |
Simple_repeat |
| scaffold3546 |
43995 |
44055 |
+ |
GA-rich |
Low_complexity |
| scaffold3546 |
45688 |
45951 |
- |
RS356 |
Unspecified |
| scaffold3546 |
46098 |
46162 |
+ |
(AAT)n |
Simple_repeat |
| scaffold3546 |
47396 |
47440 |
+ |
(TTGA)n |
Simple_repeat |
| scaffold3546 |
47520 |
47556 |
+ |
(T)n |
Simple_repeat |
| scaffold3546 |
47690 |
47787 |
+ |
RS4475 |
Unspecified |
| scaffold3546 |
49193 |
49224 |
+ |
GA-rich |
Low_complexity |
| scaffold3546 |
53751 |
53835 |
+ |
(TTCAG)n |
Simple_repeat |
| scaffold3546 |
53860 |
53892 |
+ |
(TTCAG)n |
Simple_repeat |
| scaffold3546 |
54456 |
54527 |
+ |
(ATAA)n |
Simple_repeat |
| scaffold3546 |
54671 |
54691 |
+ |
(ATTT)n |
Simple_repeat |
| scaffold3546 |
55487 |
55557 |
+ |
Copia-3_PTri-I |
LTR/Copia |
| scaffold3546 |
55558 |
55609 |
+ |
Copia-3_PTri-I |
LTR/Copia |
| scaffold3546 |
56505 |
56771 |
+ |
RS17600 |
Unspecified |
| scaffold3546 |
60706 |
60753 |
+ |
A-rich |
Low_complexity |
| scaffold3546 |
60913 |
60968 |
+ |
RS1463 |
Unspecified |
| scaffold3546 |
61664 |
62020 |
+ |
PL120 |
Unspecified |
| scaffold3546 |
64084 |
64150 |
+ |
Ogre-PT1_I-int |
LTR/Gypsy |
| scaffold3546 |
64470 |
64557 |
+ |
RS8644 |
Unspecified |
| scaffold3546 |
65038 |
65169 |
+ |
Ogre-PT1_I-int |
LTR/Gypsy |
| scaffold3546 |
65866 |
65970 |
+ |
Ogre-PT1_I-int |
LTR/Gypsy |
| scaffold3546 |
66350 |
66492 |
+ |
RS192 |
Unspecified |
| scaffold3546 |
66367 |
66637 |
+ |
RS192 |
Unspecified |
| scaffold3546 |
66407 |
66691 |
+ |
RS192 |
Unspecified |
| scaffold3546 |
66453 |
66743 |
+ |
RS192 |
Unspecified |
| scaffold3546 |
66551 |
66844 |
+ |
RS192 |
Unspecified |
| scaffold3546 |
66598 |
66900 |
+ |
RS192 |
Unspecified |
| scaffold3546 |
66806 |
67190 |
- |
RS911 |
Unspecified |
| scaffold3546 |
66853 |
68132 |
- |
RS149 |
Unspecified |
| scaffold3546 |
67132 |
68319 |
+ |
RS2579 |
Unspecified |
| scaffold3546 |
68130 |
68385 |
- |
RS709 |
Unspecified |
| scaffold3546 |
68287 |
68419 |
+ |
RS6876 |
Unspecified |
| scaffold3546 |
68489 |
68586 |
+ |
RS247 |
Unspecified |
| scaffold3546 |
68501 |
68946 |
+ |
RS247 |
Unspecified |
| scaffold3546 |
68591 |
69463 |
+ |
RS247 |
Unspecified |
| scaffold3546 |
69465 |
69803 |
- |
RS13247 |
Unspecified |
| scaffold3546 |
69983 |
70026 |
+ |
A-rich |
Low_complexity |
| scaffold3546 |
73226 |
73297 |
+ |
Gypsy-21_ST-I |
LTR/Gypsy |
| scaffold3546 |
73479 |
73521 |
+ |
(GCAAAA)n |
Simple_repeat |
| scaffold3546 |
73659 |
73691 |
+ |
A-rich |
Low_complexity |
| scaffold3546 |
74233 |
74334 |
+ |
Ogre-PT1_I-int |
LTR/Gypsy |
| scaffold3546 |
74402 |
74562 |
+ |
RS857 |
Unspecified |
| scaffold3546 |
75212 |
75319 |
+ |
Ogre-VP1_I-int |
LTR/Gypsy |
| scaffold3546 |
75898 |
76261 |
- |
RS911 |
Unspecified |
| scaffold3546 |
75938 |
77231 |
- |
RS149 |
Unspecified |
| scaffold3546 |
76280 |
77430 |
+ |
RS2579 |
Unspecified |
| scaffold3546 |
77234 |
77475 |
+ |
(CAA)n |
Simple_repeat |
| scaffold3546 |
77441 |
77475 |
+ |
(CAA)n |
Simple_repeat |
| scaffold3546 |
77441 |
77947 |
+ |
(CAA)n |
Simple_repeat |
| scaffold3546 |
77466 |
77947 |
+ |
RS247 |
Unspecified |
| scaffold3546 |
77649 |
78776 |
+ |
RS247 |
Unspecified |
| scaffold3546 |
78839 |
78868 |
+ |
(ACAAT)n |
Simple_repeat |