scaffold3554 Repeat List
| genome |
start |
end |
strand |
repeat-name |
repeat-class |
| scaffold3554 |
6 |
61 |
- |
RETROSAT5_I-int |
LTR/Gypsy |
| scaffold3554 |
2568 |
2628 |
+ |
(TTCACTA)n |
Simple_repeat |
| scaffold3554 |
2636 |
2736 |
+ |
(TTATAC)n |
Simple_repeat |
| scaffold3554 |
3341 |
3423 |
+ |
A-rich |
Low_complexity |
| scaffold3554 |
3474 |
3979 |
+ |
PL472 |
Unspecified |
| scaffold3554 |
4183 |
4214 |
+ |
(TAT)n |
Simple_repeat |
| scaffold3554 |
4961 |
5011 |
+ |
Gypsy-43_STu-LTR |
LTR/Gypsy |
| scaffold3554 |
5335 |
5394 |
+ |
A-rich |
Low_complexity |
| scaffold3554 |
5998 |
6981 |
- |
GYPSY3-I_MT |
LTR/Gypsy |
| scaffold3554 |
7040 |
7078 |
+ |
A-rich |
Low_complexity |
| scaffold3554 |
7159 |
7191 |
+ |
(ATATTT)n |
Simple_repeat |
| scaffold3554 |
7230 |
7578 |
- |
RS7842 |
Unspecified |
| scaffold3554 |
7659 |
7692 |
+ |
(CTCATC)n |
Simple_repeat |
| scaffold3554 |
7717 |
7848 |
+ |
(CAA)n |
Simple_repeat |
| scaffold3554 |
8208 |
8407 |
+ |
RS13807 |
Unspecified |
| scaffold3554 |
8286 |
8788 |
- |
RS2963 |
Unspecified |
| scaffold3554 |
8422 |
8911 |
- |
RS3286 |
Unspecified |
| scaffold3554 |
8997 |
9052 |
+ |
A-rich |
Low_complexity |
| scaffold3554 |
9402 |
9426 |
+ |
(AAAT)n |
Simple_repeat |
| scaffold3554 |
10366 |
10407 |
+ |
(GTTTGT)n |
Simple_repeat |
| scaffold3554 |
11049 |
11422 |
- |
RS8 |
Unspecified |
| scaffold3554 |
11751 |
11829 |
+ |
A-rich |
Low_complexity |
| scaffold3554 |
12074 |
12825 |
+ |
RS403 |
Unspecified |
| scaffold3554 |
13327 |
13535 |
+ |
RS1963 |
Unspecified |
| scaffold3554 |
13563 |
14451 |
+ |
PL532 |
Unspecified |
| scaffold3554 |
14580 |
14624 |
+ |
(TAATAC)n |
Simple_repeat |
| scaffold3554 |
14877 |
14918 |
+ |
(ATTTAA)n |
Simple_repeat |
| scaffold3554 |
15352 |
15404 |
+ |
(TAA)n |
Simple_repeat |
| scaffold3554 |
15532 |
15808 |
- |
RS1 |
Unspecified |
| scaffold3554 |
16014 |
16076 |
+ |
(TGTTCT)n |
Simple_repeat |
| scaffold3554 |
17103 |
17193 |
- |
Gypsy-72-LTR_ZM |
LTR/Gypsy |
| scaffold3554 |
17705 |
17983 |
+ |
RS30 |
Unspecified |
| scaffold3554 |
18316 |
18357 |
+ |
(TAATTTA)n |
Simple_repeat |
| scaffold3554 |
18484 |
18535 |
+ |
(ATTTCAT)n |
Simple_repeat |
| scaffold3554 |
18658 |
18694 |
+ |
(TAT)n |
Simple_repeat |
| scaffold3554 |
19768 |
20994 |
+ |
RS245 |
Unspecified |
| scaffold3554 |
21415 |
21799 |
+ |
PL56 |
Unspecified |
| scaffold3554 |
22315 |
22361 |
+ |
(AAAATA)n |
Simple_repeat |
| scaffold3554 |
22444 |
22512 |
+ |
(AATT)n |
Simple_repeat |
| scaffold3554 |
22656 |
23606 |
- |
RS2043 |
Unspecified |
| scaffold3554 |
23606 |
23685 |
+ |
(ATTG)n |
Simple_repeat |
| scaffold3554 |
23652 |
23696 |
+ |
(AATTGTT)n |
Simple_repeat |
| scaffold3554 |
23987 |
24033 |
+ |
(GTTTTGT)n |
Simple_repeat |
| scaffold3554 |
24563 |
24594 |
+ |
(CTCCCC)n |
Simple_repeat |
| scaffold3554 |
24563 |
24825 |
+ |
(CTCCCC)n |
Simple_repeat |
| scaffold3554 |
24590 |
24825 |
+ |
RS69 |
Unspecified |
| scaffold3554 |
24933 |
24985 |
+ |
(TAA)n |
Simple_repeat |
| scaffold3554 |
25094 |
25164 |
+ |
A-rich |
Low_complexity |
| scaffold3554 |
25200 |
25389 |
+ |
(T)n |
Simple_repeat |
| scaffold3554 |
25361 |
25389 |
+ |
(T)n |
Simple_repeat |
| scaffold3554 |
25699 |
26022 |
- |
PL243 |
Unspecified |
| scaffold3554 |
26568 |
28472 |
- |
Gypsy-72-LTR_ZM |
LTR/Gypsy |
| scaffold3554 |
26568 |
26731 |
- |
Gypsy-72-LTR_ZM |
LTR/Gypsy |
| scaffold3554 |
26662 |
28472 |
+ |
RS245 |
Unspecified |
| scaffold3554 |
28882 |
28928 |
+ |
(TTT)n |
Simple_repeat |
| scaffold3554 |
30692 |
30710 |
+ |
(A)n |
Simple_repeat |
| scaffold3554 |
31328 |
31348 |
+ |
(T)n |
Simple_repeat |
| scaffold3554 |
31717 |
31756 |
+ |
(TT)n |
Simple_repeat |
| scaffold3554 |
36236 |
36265 |
+ |
(ATTC)n |
Simple_repeat |
| scaffold3554 |
36361 |
36572 |
- |
RS1535 |
Unspecified |
| scaffold3554 |
36571 |
36632 |
- |
RS1535 |
Unspecified |
| scaffold3554 |
37202 |
37246 |
+ |
(AATAAC)n |
Simple_repeat |
| scaffold3554 |
40910 |
40977 |
+ |
(AAC)n |
Simple_repeat |
| scaffold3554 |
43783 |
44212 |
+ |
RS1018 |
Unspecified |
| scaffold3554 |
44260 |
44296 |
+ |
(A)n |
Simple_repeat |
| scaffold3554 |
44348 |
44590 |
+ |
RS4 |
Unspecified |
| scaffold3554 |
45207 |
45286 |
+ |
(ACC)n |
Simple_repeat |
| scaffold3554 |
45770 |
45877 |
+ |
(ATG)n |
Simple_repeat |
| scaffold3554 |
45941 |
46092 |
+ |
RS1071 |
Unspecified |
| scaffold3554 |
46402 |
46446 |
- |
RS1095 |
Unspecified |
| scaffold3554 |
47503 |
47534 |
+ |
A-rich |
Low_complexity |
| scaffold3554 |
47896 |
47953 |
+ |
(TAT)n |
Simple_repeat |
| scaffold3554 |
49258 |
49324 |
+ |
(ATA)n |
Simple_repeat |
| scaffold3554 |
49477 |
49672 |
- |
RS2547 |
Unspecified |
| scaffold3554 |
50009 |
50076 |
+ |
(TT)n |
Simple_repeat |
| scaffold3554 |
50009 |
50200 |
+ |
(TT)n |
Simple_repeat |
| scaffold3554 |
50065 |
50200 |
- |
RS14669 |
Unspecified |
| scaffold3554 |
50478 |
50687 |
- |
RS752 |
Unspecified |
| scaffold3554 |
50835 |
50989 |
+ |
RS4605 |
Unspecified |
| scaffold3554 |
51099 |
51490 |
+ |
MuDR3_ZM |
DNA/MULE-MuDR |
| scaffold3554 |
52821 |
52962 |
- |
RS6824 |
Unspecified |
| scaffold3554 |
53400 |
53981 |
+ |
RS2171 |
Unspecified |
| scaffold3554 |
53632 |
54327 |
- |
RS2534 |
Unspecified |
| scaffold3554 |
53880 |
54646 |
- |
RS3530 |
Unspecified |
| scaffold3554 |
54329 |
55596 |
- |
RS4015 |
Unspecified |
| scaffold3554 |
55471 |
55714 |
- |
RS1657 |
Unspecified |
| scaffold3554 |
56835 |
57007 |
- |
RS5004 |
Unspecified |
| scaffold3554 |
56895 |
57058 |
+ |
(TGAAGAAGA)n |
Simple_repeat |
| scaffold3554 |
57019 |
57058 |
+ |
(TGAAGAAGA)n |
Simple_repeat |
| scaffold3554 |
57158 |
57196 |
+ |
(T)n |
Simple_repeat |
| scaffold3554 |
57404 |
57576 |
- |
RS5004 |
Unspecified |
| scaffold3554 |
57465 |
57627 |
+ |
(ATGAAGAA)n |
Simple_repeat |
| scaffold3554 |
57587 |
57627 |
+ |
(ATGAAGAA)n |
Simple_repeat |
| scaffold3554 |
57734 |
57782 |
+ |
(T)n |
Simple_repeat |
| scaffold3554 |
57901 |
57921 |
+ |
(TA)n |
Simple_repeat |
| scaffold3554 |
58031 |
58053 |
+ |
(TA)n |
Simple_repeat |
| scaffold3554 |
58054 |
58296 |
- |
RS4 |
Unspecified |
| scaffold3554 |
58404 |
58442 |
+ |
(TCATCAC)n |
Simple_repeat |
| scaffold3554 |
59792 |
59834 |
+ |
(TG)n |
Simple_repeat |
| scaffold3554 |
60927 |
60944 |
+ |
(AT)n |
Simple_repeat |
| scaffold3554 |
60958 |
60979 |
+ |
(GT)n |
Simple_repeat |
| scaffold3554 |
61503 |
61625 |
+ |
(TGT)n |
Simple_repeat |
| scaffold3554 |
61503 |
61716 |
+ |
(TGT)n |
Simple_repeat |
| scaffold3554 |
61580 |
61716 |
+ |
RS13706 |
Unspecified |
| scaffold3554 |
62099 |
62152 |
+ |
RS2200 |
Unspecified |
| scaffold3554 |
62578 |
62875 |
+ |
RS12199 |
Unspecified |
| scaffold3554 |
62828 |
63007 |
+ |
RS5636 |
Unspecified |
| scaffold3554 |
62851 |
63096 |
+ |
RS7094 |
Unspecified |
| scaffold3554 |
63087 |
63194 |
+ |
RS12199 |
Unspecified |
| scaffold3554 |
63118 |
63363 |
+ |
RS7094 |
Unspecified |
| scaffold3554 |
63354 |
63421 |
+ |
RS12199 |
Unspecified |
| scaffold3554 |
63430 |
63591 |
+ |
RS12964 |
Unspecified |
| scaffold3554 |
63552 |
63897 |
+ |
RS12964 |
Unspecified |
| scaffold3554 |
63608 |
63951 |
+ |
RS12964 |
Unspecified |
| scaffold3554 |
63734 |
63991 |
+ |
RS12964 |
Unspecified |
| scaffold3554 |
63952 |
64006 |
- |
RS1790 |
Unspecified |
| scaffold3554 |
64921 |
65540 |
+ |
RS9240 |
Unspecified |
| scaffold3554 |
65706 |
65844 |
+ |
RS17460 |
Unspecified |
| scaffold3554 |
66009 |
66391 |
+ |
RS11656 |
Unspecified |
| scaffold3554 |
66673 |
66838 |
- |
RS9676 |
Unspecified |
| scaffold3554 |
67898 |
68100 |
+ |
PL288 |
Unspecified |
| scaffold3554 |
68561 |
68601 |
+ |
(AAT)n |
Simple_repeat |
| scaffold3554 |
69634 |
69963 |
- |
RS338 |
Unspecified |
| scaffold3554 |
69970 |
70019 |
+ |
(AT)n |
Simple_repeat |
| scaffold3554 |
70250 |
70492 |
- |
RS4 |
Unspecified |
| scaffold3554 |
70535 |
70580 |
+ |
(TATAT)n |
Simple_repeat |
| scaffold3554 |
70985 |
71439 |
+ |
(TATAT)n |
Simple_repeat |
| scaffold3554 |
71355 |
71439 |
+ |
(TATAT)n |
Simple_repeat |
| scaffold3554 |
71558 |
71675 |
+ |
RS8 |
Unspecified |
| scaffold3554 |
73454 |
73604 |
- |
PL288 |
Unspecified |
| scaffold3554 |
73667 |
73805 |
+ |
Copia-84_VV-I |
LTR/Copia |
| scaffold3554 |
74011 |
78318 |
- |
COP_I_MT-int |
LTR/Copia |
| scaffold3554 |
78614 |
78710 |
+ |
Copia-84_VV-I |
LTR/Copia |
| scaffold3554 |
78685 |
78972 |
+ |
Copia-84_VV-I |
LTR/Copia |
| scaffold3554 |
78977 |
80747 |
+ |
Copia-84_VV-I |
LTR/Copia |
| scaffold3554 |
81189 |
81285 |
+ |
RS54 |
Unspecified |
| scaffold3554 |
81559 |
81841 |
- |
RS469 |
Unspecified |
| scaffold3554 |
81927 |
82133 |
+ |
RS28 |
Unspecified |
| scaffold3554 |
82288 |
82417 |
- |
RS1533 |
Unspecified |
| scaffold3554 |
83359 |
83391 |
+ |
(T)n |
Simple_repeat |
| scaffold3554 |
83470 |
83582 |
+ |
RS15470 |
Unspecified |
| scaffold3554 |
84525 |
84784 |
- |
RS47 |
Unspecified |
| scaffold3554 |
84898 |
85158 |
- |
RS365 |
Unspecified |
| scaffold3554 |
85179 |
86095 |
+ |
RS186 |
Unspecified |
| scaffold3554 |
86578 |
86603 |
+ |
(A)n |
Simple_repeat |
| scaffold3554 |
86981 |
87005 |
+ |
(AT)n |
Simple_repeat |
| scaffold3554 |
87958 |
87984 |
+ |
(AT)n |
Simple_repeat |
| scaffold3554 |
88528 |
88745 |
+ |
RS12777 |
Unspecified |
| scaffold3554 |
89262 |
89335 |
+ |
Copia-3_PTri-I |
LTR/Copia |
| scaffold3554 |
89336 |
89545 |
+ |
Copia-3_PTri-I |
LTR/Copia |