scaffold3812 Repeat List
| genome |
start |
end |
strand |
repeat-name |
repeat-class |
| scaffold3812 |
1899 |
2007 |
- |
RS9446 |
Unspecified |
| scaffold3812 |
2441 |
2883 |
+ |
RS11201 |
Unspecified |
| scaffold3812 |
2889 |
2919 |
+ |
(AC)n |
Simple_repeat |
| scaffold3812 |
2940 |
3016 |
+ |
(CAGCAG)n |
Simple_repeat |
| scaffold3812 |
3182 |
3223 |
+ |
(AC)n |
Simple_repeat |
| scaffold3812 |
3818 |
3911 |
+ |
(GAT)n |
Simple_repeat |
| scaffold3812 |
3943 |
3956 |
+ |
(CGTTTT)n |
Simple_repeat |
| scaffold3812 |
3957 |
3988 |
+ |
(T)n |
Simple_repeat |
| scaffold3812 |
4015 |
4042 |
+ |
(TCT)n |
Simple_repeat |
| scaffold3812 |
4043 |
4057 |
+ |
(TCTTAT)n |
Simple_repeat |
| scaffold3812 |
6589 |
6721 |
- |
RS241 |
Unspecified |
| scaffold3812 |
8555 |
8624 |
+ |
(TGATGA)n |
Simple_repeat |
| scaffold3812 |
8812 |
8867 |
+ |
(TGG)n |
Simple_repeat |
| scaffold3812 |
9462 |
9517 |
+ |
(TTGATT)n |
Simple_repeat |
| scaffold3812 |
10263 |
10385 |
+ |
RS17752 |
Unspecified |
| scaffold3812 |
10444 |
10559 |
+ |
RS17071 |
Unspecified |
| scaffold3812 |
10980 |
11075 |
+ |
(CAGCT)n |
Simple_repeat |
| scaffold3812 |
11096 |
11154 |
+ |
(GTTCA)n |
Simple_repeat |
| scaffold3812 |
11352 |
11384 |
+ |
(T)n |
Simple_repeat |
| scaffold3812 |
11996 |
12028 |
+ |
RS154 |
Unspecified |
| scaffold3812 |
12192 |
12389 |
- |
RS6739 |
Unspecified |
| scaffold3812 |
14199 |
14235 |
+ |
(TTGTAGT)n |
Simple_repeat |
| scaffold3812 |
14327 |
14357 |
+ |
(TATT)n |
Simple_repeat |
| scaffold3812 |
17067 |
17138 |
+ |
PL87 |
Unspecified |
| scaffold3812 |
17146 |
17230 |
- |
RS160 |
Unspecified |
| scaffold3812 |
17227 |
17271 |
- |
RS1030 |
Unspecified |
| scaffold3812 |
19870 |
20051 |
- |
RS79 |
Unspecified |
| scaffold3812 |
21758 |
22429 |
+ |
PL850 |
Unspecified |
| scaffold3812 |
26364 |
26658 |
- |
RS574 |
Unspecified |
| scaffold3812 |
26976 |
27069 |
+ |
RS18358 |
Unspecified |
| scaffold3812 |
27335 |
27597 |
+ |
RS365 |
Unspecified |
| scaffold3812 |
27839 |
27885 |
+ |
(TAAAAA)n |
Simple_repeat |
| scaffold3812 |
28157 |
28219 |
+ |
A-rich |
Low_complexity |
| scaffold3812 |
28257 |
28466 |
- |
RS1 |
Unspecified |
| scaffold3812 |
28772 |
28802 |
+ |
(TA)n |
Simple_repeat |
| scaffold3812 |
28803 |
28823 |
+ |
(TATTTA)n |
Simple_repeat |
| scaffold3812 |
29056 |
29195 |
+ |
RS1796 |
Unspecified |
| scaffold3812 |
29509 |
29544 |
+ |
GA-rich |
Low_complexity |
| scaffold3812 |
29872 |
30829 |
+ |
RS254 |
Unspecified |
| scaffold3812 |
30048 |
30066 |
+ |
(A)n |
Simple_repeat |
| scaffold3812 |
30388 |
30423 |
+ |
(AATTA)n |
Simple_repeat |
| scaffold3812 |
30564 |
30571 |
+ |
(AAAAATC)n |
Simple_repeat |
| scaffold3812 |
30572 |
30599 |
+ |
A-rich |
Low_complexity |
| scaffold3812 |
30709 |
30879 |
+ |
RS2472 |
Unspecified |
| scaffold3812 |
31888 |
32105 |
- |
RS4077 |
Unspecified |
| scaffold3812 |
31930 |
32195 |
+ |
RS3705 |
Unspecified |
| scaffold3812 |
32023 |
32358 |
+ |
RS2472 |
Unspecified |
| scaffold3812 |
32386 |
32494 |
- |
RS11487 |
Unspecified |
| scaffold3812 |
32402 |
32512 |
- |
RS4205 |
Unspecified |
| scaffold3812 |
32536 |
32575 |
+ |
A-rich |
Low_complexity |
| scaffold3812 |
36646 |
36706 |
+ |
(TTTA)n |
Simple_repeat |
| scaffold3812 |
37881 |
37917 |
+ |
(ACCAGCA)n |
Simple_repeat |
| scaffold3812 |
38708 |
38732 |
+ |
(A)n |
Simple_repeat |
| scaffold3812 |
41156 |
41191 |
+ |
(TCCTGT)n |
Simple_repeat |
| scaffold3812 |
42102 |
42124 |
+ |
(A)n |
Simple_repeat |
| scaffold3812 |
46191 |
46270 |
+ |
SINE2-1_PD |
SINE/tRNA-RTE |
| scaffold3812 |
46436 |
46506 |
+ |
GA-rich |
Low_complexity |
| scaffold3812 |
46545 |
46583 |
+ |
A-rich |
Low_complexity |
| scaffold3812 |
46731 |
46985 |
+ |
PL301 |
Unspecified |
| scaffold3812 |
47737 |
47755 |
+ |
(TAGTTAT)n |
Simple_repeat |
| scaffold3812 |
47756 |
47781 |
+ |
(T)n |
Simple_repeat |
| scaffold3812 |
47782 |
47789 |
+ |
(TAGTTAT)n |
Simple_repeat |
| scaffold3812 |
47917 |
48003 |
- |
RS424 |
Unspecified |
| scaffold3812 |
48261 |
48332 |
+ |
(TTTATAA)n |
Simple_repeat |
| scaffold3812 |
48476 |
48504 |
+ |
(T)n |
Simple_repeat |
| scaffold3812 |
50068 |
50103 |
+ |
(AATAAGT)n |
Simple_repeat |
| scaffold3812 |
51329 |
51353 |
+ |
(ATTT)n |
Simple_repeat |
| scaffold3812 |
58161 |
58186 |
+ |
(ACCAA)n |
Simple_repeat |
| scaffold3812 |
58613 |
58642 |
+ |
(AAG)n |
Simple_repeat |
| scaffold3812 |
58760 |
58796 |
+ |
A-rich |
Low_complexity |
| scaffold3812 |
59661 |
59728 |
+ |
(TATT)n |
Simple_repeat |
| scaffold3812 |
60947 |
60977 |
+ |
(AT)n |
Simple_repeat |
| scaffold3812 |
61254 |
61286 |
+ |
(ATATCA)n |
Simple_repeat |
| scaffold3812 |
61602 |
61721 |
+ |
(AGTTG)n |
Simple_repeat |
| scaffold3812 |
62875 |
62935 |
+ |
(ATA)n |
Simple_repeat |
| scaffold3812 |
62961 |
63056 |
- |
RS15138 |
Unspecified |
| scaffold3812 |
63335 |
63465 |
+ |
(AGTTG)n |
Simple_repeat |
| scaffold3812 |
63959 |
63982 |
+ |
(T)n |
Simple_repeat |
| scaffold3812 |
64230 |
64301 |
- |
LTR-2_MX-LTR |
LTR |
| scaffold3812 |
65143 |
65191 |
+ |
A-rich |
Low_complexity |
| scaffold3812 |
65229 |
65462 |
+ |
RS1009 |
Unspecified |
| scaffold3812 |
66083 |
66134 |
+ |
(A)n |
Simple_repeat |
| scaffold3812 |
66507 |
66722 |
- |
RTE-1_TD |
LINE/RTE-BovB |
| scaffold3812 |
67277 |
67336 |
+ |
(TTTATAC)n |
Simple_repeat |
| scaffold3812 |
67438 |
67463 |
+ |
(A)n |
Simple_repeat |
| scaffold3812 |
71992 |
72012 |
+ |
(ATC)n |
Simple_repeat |
| scaffold3812 |
72087 |
72200 |
+ |
A-rich |
Low_complexity |
| scaffold3812 |
72299 |
72315 |
+ |
(A)n |
Simple_repeat |
| scaffold3812 |
72646 |
72837 |
- |
Gypsy-41_STu-I |
LTR/Gypsy |
| scaffold3812 |
75152 |
75200 |
+ |
(GGT)n |
Simple_repeat |
| scaffold3812 |
78390 |
78419 |
+ |
(A)n |
Simple_repeat |
| scaffold3812 |
78526 |
78562 |
+ |
A-rich |
Low_complexity |
| scaffold3812 |
78668 |
78703 |
+ |
(TTTTTA)n |
Simple_repeat |
| scaffold3812 |
81524 |
81689 |
+ |
RS10379 |
Unspecified |
| scaffold3812 |
81680 |
81723 |
+ |
RS180 |
Unspecified |
| scaffold3812 |
83999 |
84023 |
+ |
(AT)n |
Simple_repeat |
| scaffold3812 |
84276 |
84396 |
+ |
RS16103 |
Unspecified |
| scaffold3812 |
84635 |
84670 |
+ |
(AATAT)n |
Simple_repeat |
| scaffold3812 |
85094 |
85144 |
+ |
A-rich |
Low_complexity |
| scaffold3812 |
85534 |
85772 |
- |
RS41 |
Unspecified |
| scaffold3812 |
86244 |
86436 |
- |
RS4690 |
Unspecified |
| scaffold3812 |
86772 |
86790 |
+ |
(A)n |
Simple_repeat |
| scaffold3812 |
86961 |
87221 |
- |
PL444 |
Unspecified |
| scaffold3812 |
87214 |
87452 |
- |
PL444 |
Unspecified |
| scaffold3812 |
87452 |
87492 |
+ |
A-rich |
Low_complexity |
| scaffold3812 |
87884 |
88014 |
+ |
RS7824 |
Unspecified |
| scaffold3812 |
88042 |
88264 |
- |
RS4 |
Unspecified |
| scaffold3812 |
88137 |
88287 |
- |
RS6841 |
Unspecified |
| scaffold3812 |
88419 |
88499 |
+ |
RS1095 |
Unspecified |
| scaffold3812 |
88517 |
88909 |
- |
RS512 |
Unspecified |
| scaffold3812 |
88909 |
89122 |
+ |
RS1095 |
Unspecified |
| scaffold3812 |
89257 |
89301 |
+ |
(TTC)n |
Simple_repeat |
| scaffold3812 |
90107 |
90123 |
+ |
(A)n |
Simple_repeat |
| scaffold3812 |
90426 |
90505 |
+ |
(CTACTC)n |
Simple_repeat |
| scaffold3812 |
90749 |
90934 |
- |
RS9797 |
Unspecified |
| scaffold3812 |
90935 |
91114 |
- |
RS4 |
Unspecified |
| scaffold3812 |
90987 |
91131 |
- |
RS6841 |
Unspecified |
| scaffold3812 |
91264 |
91351 |
+ |
RS1095 |
Unspecified |
| scaffold3812 |
91362 |
91755 |
- |
RS512 |
Unspecified |
| scaffold3812 |
91759 |
91984 |
+ |
RS18 |
Unspecified |
| scaffold3812 |
92965 |
93008 |
+ |
(TTC)n |
Simple_repeat |
| scaffold3812 |
94605 |
94713 |
- |
ATRAN |
DNA? |
| scaffold3812 |
94807 |
94861 |
+ |
RS1258 |
Unspecified |
| scaffold3812 |
94860 |
95376 |
+ |
RS1053 |
Unspecified |
| scaffold3812 |
95734 |
95903 |
- |
RS16880 |
Unspecified |
| scaffold3812 |
96795 |
96914 |
+ |
(TTCAG)n |
Simple_repeat |
| scaffold3812 |
96851 |
96914 |
+ |
(TTCAG)n |
Simple_repeat |
| scaffold3812 |
96941 |
97033 |
+ |
(TTCAG)n |
Simple_repeat |
| scaffold3812 |
97917 |
97987 |
+ |
Copia-3_PTri-I |
LTR/Copia |
| scaffold3812 |
98310 |
98370 |
+ |
A-rich |
Low_complexity |
| scaffold3812 |
98468 |
98571 |
+ |
RS4475 |
Unspecified |
| scaffold3812 |
99341 |
99362 |
+ |
(T)n |
Simple_repeat |
| scaffold3812 |
100301 |
100335 |
+ |
A-rich |
Low_complexity |
| scaffold3812 |
100366 |
100456 |
+ |
LTR-7_Mad-LTR |
LTR |
| scaffold3812 |
101106 |
101150 |
+ |
(TAATCAAC)n |
Simple_repeat |
| scaffold3812 |
102449 |
102495 |
+ |
(ATTATAA)n |
Simple_repeat |
| scaffold3812 |
102755 |
102805 |
+ |
(AT)n |
Simple_repeat |
| scaffold3812 |
102971 |
102999 |
+ |
A-rich |
Low_complexity |
| scaffold3812 |
103023 |
103057 |
- |
RS1 |
Unspecified |
| scaffold3812 |
103027 |
103282 |
+ |
RS1 |
Unspecified |
| scaffold3812 |
103286 |
103345 |
- |
RS16836 |
Unspecified |
| scaffold3812 |
103308 |
103571 |
+ |
RS356 |
Unspecified |
| scaffold3812 |
103536 |
103579 |
+ |
RS10491 |
Unspecified |
| scaffold3812 |
104322 |
104350 |
+ |
(AT)n |
Simple_repeat |
| scaffold3812 |
104576 |
104602 |
+ |
(T)n |
Simple_repeat |
| scaffold3812 |
104779 |
104879 |
- |
RS1323 |
Unspecified |
| scaffold3812 |
104900 |
104996 |
- |
RS1323 |
Unspecified |
| scaffold3812 |
105600 |
105637 |
+ |
(CACT)n |
Simple_repeat |
| scaffold3812 |
105821 |
105855 |
+ |
(TTTA)n |
Simple_repeat |
| scaffold3812 |
107287 |
107379 |
+ |
RS16911 |
Unspecified |
| scaffold3812 |
107606 |
107624 |
+ |
(T)n |
Simple_repeat |
| scaffold3812 |
107709 |
107763 |
+ |
RS18405 |
Unspecified |
| scaffold3812 |
108931 |
108991 |
+ |
(AAT)n |
Simple_repeat |
| scaffold3812 |
109482 |
109505 |
+ |
(AAT)n |
Simple_repeat |
| scaffold3812 |
110059 |
110087 |
+ |
(TAAA)n |
Simple_repeat |
| scaffold3812 |
110929 |
111016 |
- |
RS391 |
Unspecified |
| scaffold3812 |
112734 |
112785 |
+ |
(ATATTA)n |
Simple_repeat |
| scaffold3812 |
112898 |
113001 |
- |
RS1328 |
Unspecified |
| scaffold3812 |
113020 |
113319 |
- |
RS565 |
Unspecified |
| scaffold3812 |
113467 |
113617 |
+ |
(CCCGA)n |
Simple_repeat |