scaffold39712 Repeat List
| genome |
start |
end |
strand |
repeat-name |
repeat-class |
| scaffold39712 |
204 |
247 |
+ |
(AACATAA)n |
Simple_repeat |
| scaffold39712 |
334 |
370 |
+ |
(GCCG)n |
Simple_repeat |
| scaffold39712 |
554 |
593 |
+ |
A-rich |
Low_complexity |
| scaffold39712 |
1089 |
1094 |
+ |
(ATTT)n |
Simple_repeat |
| scaffold39712 |
1095 |
1146 |
+ |
(TTATTAA)n |
Simple_repeat |
| scaffold39712 |
1447 |
1497 |
+ |
A-rich |
Low_complexity |
| scaffold39712 |
4929 |
5148 |
- |
ATHILA-6_SBi-I |
LTR/Gypsy |
| scaffold39712 |
6744 |
6785 |
+ |
(CGGC)n |
Simple_repeat |
| scaffold39712 |
7496 |
7501 |
+ |
(ATTT)n |
Simple_repeat |
| scaffold39712 |
7502 |
7553 |
+ |
(TTATTAA)n |
Simple_repeat |
| scaffold39712 |
7854 |
7903 |
+ |
A-rich |
Low_complexity |
| scaffold39712 |
9035 |
9126 |
+ |
A-rich |
Low_complexity |
| scaffold39712 |
9270 |
9464 |
- |
EnSpm-1_GM |
DNA/CMC-EnSpm |
| scaffold39712 |
9456 |
9776 |
+ |
RS6260 |
Unspecified |
| scaffold39712 |
9518 |
10065 |
- |
PL451 |
Unspecified |
| scaffold39712 |
9889 |
10124 |
+ |
RS5897 |
Unspecified |
| scaffold39712 |
10478 |
10519 |
+ |
(CA)n |
Simple_repeat |
| scaffold39712 |
11007 |
11125 |
+ |
(TGA)n |
Simple_repeat |
| scaffold39712 |
11107 |
11162 |
+ |
GA-rich |
Low_complexity |
| scaffold39712 |
11197 |
11393 |
+ |
EnSpm-1_GM |
DNA/CMC-EnSpm |
| scaffold39712 |
11666 |
12317 |
+ |
PL238 |
Unspecified |
| scaffold39712 |
13291 |
13465 |
- |
L1-9_Mad |
LINE/L1 |
| scaffold39712 |
13846 |
13886 |
+ |
(AT)n |
Simple_repeat |
| scaffold39712 |
15590 |
15687 |
+ |
RS607 |
Unspecified |
| scaffold39712 |
16715 |
16734 |
+ |
(A)n |
Simple_repeat |
| scaffold39712 |
18001 |
18042 |
+ |
A-rich |
Low_complexity |
| scaffold39712 |
18375 |
18421 |
+ |
(T)n |
Simple_repeat |
| scaffold39712 |
18537 |
18569 |
+ |
(TA)n |
Simple_repeat |
| scaffold39712 |
18683 |
18732 |
+ |
A-rich |
Low_complexity |
| scaffold39712 |
19389 |
19407 |
+ |
(A)n |
Simple_repeat |
| scaffold39712 |
19484 |
19554 |
+ |
A-rich |
Low_complexity |
| scaffold39712 |
19556 |
20109 |
+ |
PL469 |
Unspecified |
| scaffold39712 |
20801 |
20826 |
+ |
(T)n |
Simple_repeat |
| scaffold39712 |
24660 |
25029 |
- |
PL773 |
Unspecified |
| scaffold39712 |
25092 |
25123 |
+ |
(AATTT)n |
Simple_repeat |
| scaffold39712 |
26089 |
26132 |
- |
PL169 |
Unspecified |
| scaffold39712 |
26477 |
26894 |
- |
RS458 |
Unspecified |
| scaffold39712 |
27276 |
27518 |
- |
RS4864 |
Unspecified |
| scaffold39712 |
27360 |
27577 |
+ |
RS3355 |
Unspecified |
| scaffold39712 |
27614 |
27859 |
+ |
RS6025 |
Unspecified |
| scaffold39712 |
27893 |
28263 |
- |
RS3687 |
Unspecified |
| scaffold39712 |
28850 |
28935 |
+ |
(TAA)n |
Simple_repeat |
| scaffold39712 |
29421 |
29487 |
+ |
LINE1-8_SBi |
LINE/L1 |
| scaffold39712 |
30843 |
30867 |
+ |
(A)n |
Simple_repeat |
| scaffold39712 |
30941 |
30987 |
+ |
(ATT)n |
Simple_repeat |
| scaffold39712 |
31455 |
31611 |
+ |
TRAMET1 |
DNA/TcMar-Stowaway |
| scaffold39712 |
31768 |
31803 |
+ |
PL296 |
Unspecified |
| scaffold39712 |
32329 |
32529 |
+ |
RS10583 |
Unspecified |
| scaffold39712 |
33227 |
33388 |
+ |
RS1746 |
Unspecified |
| scaffold39712 |
33396 |
33671 |
- |
RS1746 |
Unspecified |
| scaffold39712 |
33684 |
34290 |
- |
RS3952 |
Unspecified |
| scaffold39712 |
34271 |
34336 |
+ |
RS13337 |
Unspecified |
| scaffold39712 |
34336 |
34556 |
+ |
RS13337 |
Unspecified |
| scaffold39712 |
34689 |
34728 |
+ |
(TAGAA)n |
Simple_repeat |
| scaffold39712 |
36200 |
36235 |
+ |
(T)n |
Simple_repeat |
| scaffold39712 |
36707 |
36987 |
+ |
(ATTTTT)n |
Simple_repeat |
| scaffold39712 |
36707 |
36765 |
+ |
(ATTTTT)n |
Simple_repeat |
| scaffold39712 |
36751 |
36987 |
+ |
RS4303 |
Unspecified |
| scaffold39712 |
38599 |
38639 |
+ |
A-rich |
Low_complexity |
| scaffold39712 |
39576 |
40040 |
- |
RS2697 |
Unspecified |
| scaffold39712 |
40358 |
40394 |
+ |
Copia-48_Mad-I |
LTR/Copia |
| scaffold39712 |
40883 |
41307 |
+ |
PL916 |
Unspecified |
| scaffold39712 |
41385 |
41438 |
+ |
A-rich |
Low_complexity |
| scaffold39712 |
42578 |
42626 |
+ |
A-rich |
Low_complexity |
| scaffold39712 |
43044 |
43061 |
+ |
(T)n |
Simple_repeat |
| scaffold39712 |
43170 |
43194 |
+ |
(T)n |
Simple_repeat |
| scaffold39712 |
43558 |
43619 |
+ |
(TTATTAA)n |
Simple_repeat |
| scaffold39712 |
45127 |
45169 |
+ |
(GACCC)n |
Simple_repeat |
| scaffold39712 |
50057 |
50162 |
- |
RS750 |
Unspecified |
| scaffold39712 |
51730 |
51893 |
+ |
hAT-N16_ZM |
DNA/hAT-Ac |
| scaffold39712 |
52018 |
52256 |
- |
DS-RICE3N |
DNA/hAT-Ac |
| scaffold39712 |
53179 |
53698 |
- |
RS2105 |
Unspecified |
| scaffold39712 |
54173 |
54583 |
+ |
Copia-89_VV-I |
LTR/Copia |
| scaffold39712 |
54602 |
56640 |
+ |
Copia-89_VV-I |
LTR/Copia |
| scaffold39712 |
57922 |
58243 |
+ |
Copia-89_VV-I |
LTR/Copia |
| scaffold39712 |
58254 |
59060 |
+ |
Copia-89_VV-I |
LTR/Copia |
| scaffold39712 |
59061 |
59096 |
+ |
(TAAAGTT)n |
Simple_repeat |
| scaffold39712 |
59097 |
59419 |
+ |
Copia-89_VV-I |
LTR/Copia |
| scaffold39712 |
59420 |
59884 |
- |
RS2105 |
Unspecified |
| scaffold39712 |
60293 |
60577 |
- |
PL157 |
Unspecified |
| scaffold39712 |
60877 |
60941 |
+ |
(TTTTA)n |
Simple_repeat |
| scaffold39712 |
61119 |
61229 |
- |
Copia-3_PTri-I |
LTR/Copia |
| scaffold39712 |
61546 |
61641 |
+ |
RS4475 |
Unspecified |
| scaffold39712 |
62186 |
62221 |
+ |
ATRAN |
DNA? |
| scaffold39712 |
62884 |
62973 |
- |
LTR-7_Mad-LTR |
LTR |
| scaffold39712 |
63551 |
63589 |
+ |
(TTTC)n |
Simple_repeat |
| scaffold39712 |
64065 |
64272 |
+ |
(AAT)n |
Simple_repeat |
| scaffold39712 |
64183 |
64272 |
+ |
(AAT)n |
Simple_repeat |
| scaffold39712 |
64366 |
64511 |
- |
PL206 |
Unspecified |
| scaffold39712 |
66036 |
66061 |
+ |
(T)n |
Simple_repeat |
| scaffold39712 |
73837 |
74205 |
- |
MuDR_A_B |
MuDR_A_B(TransposonPSI) |
| scaffold39712 |
74684 |
74739 |
+ |
(ATCTATA)n |
Simple_repeat |
| scaffold39712 |
75049 |
75158 |
+ |
RS2741 |
Unspecified |
| scaffold39712 |
75281 |
75827 |
+ |
RS4457 |
Unspecified |
| scaffold39712 |
76020 |
76043 |
+ |
(A)n |
Simple_repeat |
| scaffold39712 |
77515 |
77544 |
+ |
(AATATT)n |
Simple_repeat |
| scaffold39712 |
77545 |
77606 |
+ |
(TTG)n |
Simple_repeat |
| scaffold39712 |
77607 |
77706 |
+ |
(AATATT)n |
Simple_repeat |
| scaffold39712 |
77697 |
78068 |
+ |
RS8 |
Unspecified |
| scaffold39712 |
78069 |
78162 |
+ |
PL729 |
Unspecified |
| scaffold39712 |
78432 |
78585 |
+ |
RS6020 |
Unspecified |
| scaffold39712 |
79448 |
79481 |
+ |
(TAAT)n |
Simple_repeat |
| scaffold39712 |
79730 |
79740 |
+ |
(ATTTAT)n |
Simple_repeat |
| scaffold39712 |
79741 |
79849 |
+ |
(ATTTTAC)n |
Simple_repeat |
| scaffold39712 |
79850 |
79857 |
+ |
(ATTTAT)n |
Simple_repeat |
| scaffold39712 |
80257 |
80411 |
+ |
RS11329 |
Unspecified |
| scaffold39712 |
80438 |
80491 |
+ |
A-rich |
Low_complexity |
| scaffold39712 |
80550 |
80608 |
+ |
PL729 |
Unspecified |
| scaffold39712 |
80608 |
80655 |
+ |
(TTTCTGAAGT)n |
Simple_repeat |
| scaffold39712 |
80928 |
80977 |
+ |
(TTAT)n |
Simple_repeat |
| scaffold39712 |
81197 |
81246 |
+ |
G-rich |
Low_complexity |
| scaffold39712 |
81197 |
81336 |
+ |
G-rich |
Low_complexity |
| scaffold39712 |
81231 |
81336 |
- |
PL737 |
Unspecified |
| scaffold39712 |
81588 |
81679 |
- |
RS468 |
Unspecified |
| scaffold39712 |
81819 |
82048 |
- |
RS581 |
Unspecified |
| scaffold39712 |
82218 |
82271 |
+ |
A-rich |
Low_complexity |
| scaffold39712 |
82484 |
82622 |
+ |
RS5094 |
Unspecified |
| scaffold39712 |
83053 |
83093 |
+ |
(TTTC)n |
Simple_repeat |
| scaffold39712 |
83580 |
83596 |
+ |
(T)n |
Simple_repeat |
| scaffold39712 |
92424 |
92460 |
+ |
(TCGGATT)n |
Simple_repeat |
| scaffold39712 |
92654 |
92968 |
+ |
(CCCGA)n |
Simple_repeat |
| scaffold39712 |
93127 |
93306 |
+ |
(CCCGA)n |
Simple_repeat |
| scaffold39712 |
93307 |
93361 |
+ |
(GACCC)n |
Simple_repeat |
| scaffold39712 |
93527 |
93553 |
+ |
(T)n |
Simple_repeat |
| scaffold39712 |
93593 |
93723 |
+ |
RS12540 |
Unspecified |
| scaffold39712 |
94591 |
94875 |
- |
PL812 |
Unspecified |
| scaffold39712 |
95513 |
95558 |
+ |
(TTTATT)n |
Simple_repeat |
| scaffold39712 |
95864 |
95890 |
+ |
(TAATT)n |
Simple_repeat |
| scaffold39712 |
96000 |
96030 |
+ |
(TTTC)n |
Simple_repeat |
| scaffold39712 |
96345 |
96405 |
+ |
(ATA)n |
Simple_repeat |
| scaffold39712 |
96785 |
97049 |
- |
RS356 |
Unspecified |
| scaffold39712 |
97413 |
97464 |
+ |
(AATAAGTT)n |
Simple_repeat |
| scaffold39712 |
97973 |
98104 |
+ |
(ATACGT)n |
Simple_repeat |
| scaffold39712 |
98105 |
98165 |
+ |
(GTGAATA)n |
Simple_repeat |
| scaffold39712 |
98162 |
99766 |
- |
RS2 |
Unspecified |
| scaffold39712 |
100219 |
100274 |
- |
VLINE3_VV |
LINE/L1 |
| scaffold39712 |
100910 |
102535 |
- |
LINE |
LINE(TransposonPSI) |
| scaffold39712 |
101042 |
101090 |
- |
ATLINE1_6 |
LINE/L1 |
| scaffold39712 |
101231 |
101505 |
- |
SHALINE10_MT |
LINE/L1 |
| scaffold39712 |
104813 |
104863 |
+ |
(TTTACTT)n |
Simple_repeat |
| scaffold39712 |
104954 |
104990 |
+ |
(TAT)n |
Simple_repeat |
| scaffold39712 |
106326 |
106440 |
+ |
ATHILA-2_SBi-I |
LTR/Gypsy |
| scaffold39712 |
107714 |
107780 |
+ |
ATGP5A_I-int |
LTR/Gypsy |
| scaffold39712 |
107781 |
107812 |
+ |
Copia-85_ST-I |
LTR/Copia |
| scaffold39712 |
108084 |
108238 |
+ |
(CCGGA)n |
Simple_repeat |
| scaffold39712 |
108346 |
108405 |
+ |
(TCCGG)n |
Simple_repeat |
| scaffold39712 |
108433 |
108538 |
+ |
PL827 |
Unspecified |
| scaffold39712 |
108485 |
108785 |
+ |
RS1094 |
Unspecified |
| scaffold39712 |
108659 |
108894 |
+ |
RS1094 |
Unspecified |
| scaffold39712 |
108665 |
108922 |
+ |
RS12640 |
Unspecified |
| scaffold39712 |
109250 |
110647 |
+ |
RS824 |
Unspecified |
| scaffold39712 |
109631 |
111141 |
- |
PL666 |
Unspecified |
| scaffold39712 |
112677 |
112709 |
+ |
(TC)n |
Simple_repeat |
| scaffold39712 |
112932 |
113029 |
+ |
(AATTAA)n |
Simple_repeat |
| scaffold39712 |
113595 |
113631 |
+ |
(A)n |
Simple_repeat |
| scaffold39712 |
114137 |
114166 |
+ |
(TATTATA)n |
Simple_repeat |
| scaffold39712 |
114262 |
114352 |
+ |
(GACGAA)n |
Simple_repeat |
| scaffold39712 |
114648 |
114748 |
- |
Copia-62_GM-LTR |
LTR/Copia |
| scaffold39712 |
117839 |
117878 |
+ |
(TGTTTT)n |
Simple_repeat |
| scaffold39712 |
118006 |
118094 |
+ |
(TGTC)n |
Simple_repeat |
| scaffold39712 |
118677 |
119418 |
- |
Gypsy3-VV_I-int |
LTR/Gypsy |
| scaffold39712 |
119608 |
121329 |
- |
gypsy |
gypsy(TransposonPSI) |
| scaffold39712 |
119750 |
119840 |
- |
RAM4_I-int |
LTR/Gypsy |
| scaffold39712 |
119809 |
119854 |
- |
Gypsy3-VV_I-int |
LTR/Gypsy |
| scaffold39712 |
119936 |
121273 |
- |
Gypsy-20_BRa-I |
LTR/Gypsy |
| scaffold39712 |
121539 |
121618 |
- |
Gypsy3-VV_I-int |
LTR/Gypsy |
| scaffold39712 |
127217 |
127428 |
- |
RS4551 |
Unspecified |
| scaffold39712 |
127566 |
127858 |
+ |
ATIS112A |
DNA/PIF-Harbinger |
| scaffold39712 |
127901 |
128171 |
+ |
MTIS112A |
DNA/PIF-Harbinger |
| scaffold39712 |
128504 |
128536 |
+ |
(TTTACA)n |
Simple_repeat |
| scaffold39712 |
130246 |
130295 |
+ |
(AGCTCG)n |
Simple_repeat |
| scaffold39712 |
130623 |
130790 |
+ |
PL699 |
Unspecified |
| scaffold39712 |
130857 |
130974 |
+ |
PL699 |
Unspecified |
| scaffold39712 |
131165 |
131215 |
+ |
(GGT)n |
Simple_repeat |
| scaffold39712 |
131611 |
131649 |
+ |
(A)n |
Simple_repeat |
| scaffold39712 |
131723 |
131797 |
- |
PL165 |
Unspecified |
| scaffold39712 |
131947 |
131982 |
+ |
(A)n |
Simple_repeat |
| scaffold39712 |
132568 |
132606 |
+ |
(GTGTCC)n |
Simple_repeat |
| scaffold39712 |
132969 |
133591 |
+ |
RS637 |
Unspecified |
| scaffold39712 |
133782 |
133818 |
+ |
(ACCCG)n |
Simple_repeat |
| scaffold39712 |
133819 |
133988 |
+ |
RS13016 |
Unspecified |
| scaffold39712 |
133880 |
134014 |
+ |
RS14104 |
Unspecified |
| scaffold39712 |
134013 |
134159 |
- |
Sat-1_Mad |
Satellite |
| scaffold39712 |
134249 |
134292 |
+ |
(TTTT)n |
Simple_repeat |
| scaffold39712 |
134322 |
134490 |
+ |
RS13016 |
Unspecified |
| scaffold39712 |
134383 |
134516 |
+ |
RS14104 |
Unspecified |
| scaffold39712 |
134515 |
134682 |
- |
Sat-1_Mad |
Satellite |
| scaffold39712 |
134702 |
134738 |
+ |
(TATTTAG)n |
Simple_repeat |
| scaffold39712 |
135437 |
135705 |
- |
RS306 |
Unspecified |
| scaffold39712 |
135980 |
136039 |
+ |
A-rich |
Low_complexity |
| scaffold39712 |
136317 |
137181 |
- |
RS66 |
Unspecified |
| scaffold39712 |
137529 |
137560 |
+ |
(T)n |
Simple_repeat |
| scaffold39712 |
139268 |
139421 |
+ |
RS2814 |
Unspecified |
| scaffold39712 |
139479 |
139512 |
+ |
(AGCGGAC)n |
Simple_repeat |
| scaffold39712 |
139513 |
139551 |
+ |
(GCAGCG)n |
Simple_repeat |
| scaffold39712 |
139559 |
139593 |
+ |
(ACA)n |
Simple_repeat |
| scaffold39712 |
141775 |
141855 |
+ |
(ATCAA)n |
Simple_repeat |
| scaffold39712 |
142191 |
142234 |
+ |
(GTCGGTG)n |
Simple_repeat |
| scaffold39712 |
142624 |
142838 |
- |
RS306 |
Unspecified |
| scaffold39712 |
142841 |
142877 |
+ |
(TATTTAG)n |
Simple_repeat |
| scaffold39712 |
143053 |
144150 |
+ |
RS425 |
Unspecified |