scaffold3986 Repeat List
| genome |
start |
end |
strand |
repeat-name |
repeat-class |
| scaffold3986 |
743 |
781 |
+ |
(TCCACC)n |
Simple_repeat |
| scaffold3986 |
1866 |
1895 |
+ |
A-rich |
Low_complexity |
| scaffold3986 |
1922 |
1943 |
+ |
(AAT)n |
Simple_repeat |
| scaffold3986 |
2119 |
2154 |
+ |
(ATTTTT)n |
Simple_repeat |
| scaffold3986 |
2302 |
2361 |
+ |
(TAAGT)n |
Simple_repeat |
| scaffold3986 |
2946 |
2986 |
+ |
A-rich |
Low_complexity |
| scaffold3986 |
3173 |
3882 |
- |
RTE-1_Mad |
LINE/RTE-BovB |
| scaffold3986 |
5194 |
5469 |
- |
RS454 |
Unspecified |
| scaffold3986 |
6741 |
6860 |
- |
RS11411 |
Unspecified |
| scaffold3986 |
6968 |
7229 |
+ |
RS82 |
Unspecified |
| scaffold3986 |
7448 |
7627 |
+ |
(GAAT)n |
Simple_repeat |
| scaffold3986 |
7575 |
7627 |
+ |
(GAAT)n |
Simple_repeat |
| scaffold3986 |
7736 |
9267 |
- |
Copia-78_ST-I |
LTR/Copia |
| scaffold3986 |
9524 |
9570 |
+ |
(AGGTGGTGG)n |
Simple_repeat |
| scaffold3986 |
9709 |
10567 |
- |
Copia-78_ST-I |
LTR/Copia |
| scaffold3986 |
11507 |
12117 |
- |
Copia-19_ST-I |
LTR/Copia |
| scaffold3986 |
12347 |
12395 |
+ |
A-rich |
Low_complexity |
| scaffold3986 |
12415 |
12467 |
+ |
(GAAT)n |
Simple_repeat |
| scaffold3986 |
12823 |
13058 |
+ |
RS18 |
Unspecified |
| scaffold3986 |
13501 |
13527 |
+ |
G-rich |
Low_complexity |
| scaffold3986 |
13834 |
13861 |
+ |
(A)n |
Simple_repeat |
| scaffold3986 |
14202 |
18190 |
- |
Copia-2_GM-I |
LTR/Copia |
| scaffold3986 |
22429 |
22465 |
+ |
A-rich |
Low_complexity |
| scaffold3986 |
23008 |
23059 |
+ |
(ATC)n |
Simple_repeat |
| scaffold3986 |
23108 |
23147 |
+ |
(TCATAT)n |
Simple_repeat |
| scaffold3986 |
24473 |
24490 |
+ |
(A)n |
Simple_repeat |
| scaffold3986 |
27103 |
27150 |
+ |
(TCC)n |
Simple_repeat |
| scaffold3986 |
27401 |
27446 |
+ |
(AATTACA)n |
Simple_repeat |
| scaffold3986 |
27685 |
27717 |
+ |
(GAT)n |
Simple_repeat |
| scaffold3986 |
27797 |
27939 |
- |
RS622 |
Unspecified |
| scaffold3986 |
28097 |
28319 |
+ |
RS8 |
Unspecified |
| scaffold3986 |
28356 |
28389 |
+ |
(TTTAT)n |
Simple_repeat |
| scaffold3986 |
28692 |
29388 |
- |
RTE-1_Mad |
LINE/RTE-BovB |
| scaffold3986 |
29416 |
30006 |
- |
RTE-1_Mad |
LINE/RTE-BovB |
| scaffold3986 |
30192 |
30253 |
+ |
(TATT)n |
Simple_repeat |
| scaffold3986 |
30265 |
30770 |
+ |
RS265 |
Unspecified |
| scaffold3986 |
31350 |
32937 |
+ |
Copia-50_GM-I |
LTR/Copia |
| scaffold3986 |
33091 |
34632 |
+ |
Copia-50_GM-I |
LTR/Copia |
| scaffold3986 |
35023 |
36085 |
+ |
RS265 |
Unspecified |
| scaffold3986 |
36218 |
36400 |
- |
RS846 |
Unspecified |
| scaffold3986 |
36397 |
36732 |
+ |
RS326 |
Unspecified |
| scaffold3986 |
36759 |
36991 |
- |
RTE-1B_Mad |
LINE/RTE-BovB |
| scaffold3986 |
37833 |
37869 |
+ |
(A)n |
Simple_repeat |
| scaffold3986 |
38084 |
38141 |
+ |
(AGGCGCA)n |
Simple_repeat |
| scaffold3986 |
38326 |
38631 |
- |
RS454 |
Unspecified |
| scaffold3986 |
39575 |
39641 |
+ |
(ATC)n |
Simple_repeat |
| scaffold3986 |
39970 |
40075 |
+ |
RS7321 |
Unspecified |
| scaffold3986 |
40175 |
40311 |
+ |
RS6357 |
Unspecified |
| scaffold3986 |
40453 |
40612 |
+ |
RS3794 |
Unspecified |
| scaffold3986 |
40489 |
40656 |
+ |
RS3404 |
Unspecified |
| scaffold3986 |
40699 |
40791 |
+ |
(ATTA)n |
Simple_repeat |
| scaffold3986 |
41227 |
41582 |
- |
RS600 |
Unspecified |
| scaffold3986 |
41679 |
41703 |
+ |
(ATTA)n |
Simple_repeat |
| scaffold3986 |
41951 |
42030 |
+ |
(TCG)n |
Simple_repeat |
| scaffold3986 |
42278 |
42355 |
+ |
(TTTTTGA)n |
Simple_repeat |
| scaffold3986 |
42411 |
42461 |
+ |
(TATTGT)n |
Simple_repeat |
| scaffold3986 |
42561 |
42606 |
+ |
(TTG)n |
Simple_repeat |
| scaffold3986 |
43039 |
43069 |
+ |
(TTTAG)n |
Simple_repeat |
| scaffold3986 |
43585 |
44026 |
+ |
RS14295 |
Unspecified |
| scaffold3986 |
44537 |
44650 |
+ |
RS13410 |
Unspecified |
| scaffold3986 |
45412 |
45578 |
+ |
RS13511 |
Unspecified |
| scaffold3986 |
46582 |
46633 |
+ |
(ATTTC)n |
Simple_repeat |
| scaffold3986 |
48862 |
49068 |
- |
RS10018 |
Unspecified |
| scaffold3986 |
50438 |
50558 |
+ |
RS10204 |
Unspecified |
| scaffold3986 |
51065 |
51151 |
- |
RS29 |
Unspecified |
| scaffold3986 |
51182 |
51262 |
+ |
PL664 |
Unspecified |
| scaffold3986 |
53068 |
53250 |
- |
RS2407 |
Unspecified |
| scaffold3986 |
53262 |
53736 |
+ |
RS4570 |
Unspecified |
| scaffold3986 |
53856 |
54294 |
- |
RS3738 |
Unspecified |
| scaffold3986 |
54372 |
54446 |
+ |
RS9071 |
Unspecified |
| scaffold3986 |
54802 |
54939 |
+ |
RS11300 |
Unspecified |
| scaffold3986 |
55493 |
55560 |
+ |
(AATTAA)n |
Simple_repeat |
| scaffold3986 |
55708 |
55779 |
+ |
(TAA)n |
Simple_repeat |
| scaffold3986 |
55886 |
55972 |
+ |
GA-rich |
Low_complexity |
| scaffold3986 |
55990 |
56059 |
+ |
(CAC)n |
Simple_repeat |
| scaffold3986 |
57757 |
57903 |
+ |
RS6137 |
Unspecified |
| scaffold3986 |
57945 |
58243 |
+ |
RS6889 |
Unspecified |
| scaffold3986 |
58482 |
58543 |
+ |
A-rich |
Low_complexity |
| scaffold3986 |
58549 |
58792 |
- |
RS4 |
Unspecified |
| scaffold3986 |
58985 |
59238 |
- |
PL178 |
Unspecified |
| scaffold3986 |
59677 |
59719 |
+ |
(TAT)n |
Simple_repeat |
| scaffold3986 |
59900 |
60112 |
+ |
(TTCAG)n |
Simple_repeat |
| scaffold3986 |
60217 |
60278 |
+ |
(TTTA)n |
Simple_repeat |
| scaffold3986 |
60754 |
60854 |
+ |
RS1412 |
Unspecified |
| scaffold3986 |
60782 |
60910 |
- |
RS5053 |
Unspecified |
| scaffold3986 |
60984 |
61027 |
+ |
RS1351 |
Unspecified |
| scaffold3986 |
61530 |
61588 |
+ |
GA-rich |
Low_complexity |
| scaffold3986 |
61949 |
62194 |
- |
RS5602 |
Unspecified |
| scaffold3986 |
63265 |
63530 |
+ |
RS3162 |
Unspecified |
| scaffold3986 |
63463 |
63625 |
+ |
RS18151 |
Unspecified |
| scaffold3986 |
63630 |
63825 |
+ |
RS10386 |
Unspecified |
| scaffold3986 |
64328 |
65967 |
- |
Copia-82_GM-I |
LTR/Copia |
| scaffold3986 |
66281 |
67217 |
- |
Copia-32-I_VV |
LTR/Copia |
| scaffold3986 |
67218 |
67350 |
+ |
Copia1-PTR_I-int |
LTR/Copia |
| scaffold3986 |
67351 |
67556 |
- |
Copia-32-I_VV |
LTR/Copia |
| scaffold3986 |
68170 |
68550 |
- |
TY1_Copia |
TY1_Copia(TransposonPSI) |
| scaffold3986 |
69216 |
69400 |
+ |
RS8990 |
Unspecified |
| scaffold3986 |
69505 |
69664 |
+ |
RS5099 |
Unspecified |
| scaffold3986 |
70055 |
70091 |
+ |
A-rich |
Low_complexity |
| scaffold3986 |
70461 |
70600 |
+ |
RS4237 |
Unspecified |
| scaffold3986 |
70782 |
70838 |
+ |
(AGAAGT)n |
Simple_repeat |
| scaffold3986 |
71122 |
71306 |
+ |
RS1506 |
Unspecified |
| scaffold3986 |
72132 |
72176 |
- |
PL296 |
Unspecified |
| scaffold3986 |
72140 |
72261 |
+ |
PL169 |
Unspecified |
| scaffold3986 |
72263 |
72285 |
+ |
(T)n |
Simple_repeat |
| scaffold3986 |
72772 |
72798 |
+ |
(TTGT)n |
Simple_repeat |
| scaffold3986 |
73957 |
74169 |
- |
RS2566 |
Unspecified |
| scaffold3986 |
73981 |
74352 |
- |
RS647 |
Unspecified |
| scaffold3986 |
74442 |
74720 |
- |
PL664 |
Unspecified |
| scaffold3986 |
74566 |
74758 |
- |
PL664 |
Unspecified |
| scaffold3986 |
75769 |
75887 |
- |
PL596 |
Unspecified |
| scaffold3986 |
75889 |
75990 |
- |
RS748 |
Unspecified |
| scaffold3986 |
75995 |
76860 |
- |
RS822 |
Unspecified |
| scaffold3986 |
76758 |
76994 |
- |
RS741 |
Unspecified |
| scaffold3986 |
76994 |
77104 |
+ |
RS375 |
Unspecified |
| scaffold3986 |
77395 |
77600 |
- |
RS235 |
Unspecified |
| scaffold3986 |
77401 |
77630 |
+ |
RS1691 |
Unspecified |
| scaffold3986 |
77661 |
77840 |
+ |
RS279 |
Unspecified |
| scaffold3986 |
77880 |
78156 |
+ |
RS11773 |
Unspecified |
| scaffold3986 |
79367 |
79411 |
+ |
(CA)n |
Simple_repeat |
| scaffold3986 |
80086 |
80153 |
+ |
(TGA)n |
Simple_repeat |
| scaffold3986 |
80281 |
80324 |
+ |
(TAT)n |
Simple_repeat |
| scaffold3986 |
80462 |
80496 |
+ |
(TA)n |
Simple_repeat |
| scaffold3986 |
80739 |
80791 |
+ |
(TA)n |
Simple_repeat |
| scaffold3986 |
81069 |
81154 |
- |
RS2884 |
Unspecified |
| scaffold3986 |
81267 |
81358 |
+ |
(GTTATC)n |
Simple_repeat |
| scaffold3986 |
81359 |
81387 |
+ |
(TCA)n |
Simple_repeat |
| scaffold3986 |
81402 |
82226 |
- |
RS1926 |
Unspecified |
| scaffold3986 |
82087 |
82423 |
+ |
RS1331 |
Unspecified |
| scaffold3986 |
82514 |
82542 |
+ |
(TA)n |
Simple_repeat |