scaffold41068 Repeat List
| genome |
start |
end |
strand |
repeat-name |
repeat-class |
| scaffold41068 |
1 |
186 |
+ |
PL942 |
Unspecified |
| scaffold41068 |
1 |
755 |
+ |
RS227 |
Unspecified |
| scaffold41068 |
407 |
441 |
+ |
A-rich |
Low_complexity |
| scaffold41068 |
591 |
763 |
- |
RS17860 |
Unspecified |
| scaffold41068 |
746 |
793 |
- |
RS18371 |
Unspecified |
| scaffold41068 |
1243 |
1353 |
- |
RS13312 |
Unspecified |
| scaffold41068 |
1764 |
2008 |
+ |
PL492 |
Unspecified |
| scaffold41068 |
2008 |
2191 |
+ |
RS1680 |
Unspecified |
| scaffold41068 |
2271 |
2310 |
+ |
(T)n |
Simple_repeat |
| scaffold41068 |
2375 |
2712 |
+ |
RS6229 |
Unspecified |
| scaffold41068 |
6515 |
6550 |
+ |
(TCGTG)n |
Simple_repeat |
| scaffold41068 |
7785 |
7880 |
+ |
RS4475 |
Unspecified |
| scaffold41068 |
9150 |
9173 |
+ |
(A)n |
Simple_repeat |
| scaffold41068 |
10550 |
10672 |
+ |
PL476 |
Unspecified |
| scaffold41068 |
11042 |
11239 |
+ |
RS12835 |
Unspecified |
| scaffold41068 |
11423 |
11770 |
- |
RS7093 |
Unspecified |
| scaffold41068 |
11802 |
11956 |
+ |
RS10039 |
Unspecified |
| scaffold41068 |
12092 |
12555 |
+ |
RS11731 |
Unspecified |
| scaffold41068 |
12560 |
12774 |
- |
RS10422 |
Unspecified |
| scaffold41068 |
12801 |
12945 |
+ |
RS7674 |
Unspecified |
| scaffold41068 |
14972 |
15012 |
+ |
(AACGAA)n |
Simple_repeat |
| scaffold41068 |
15290 |
15382 |
+ |
(GGCAT)n |
Simple_repeat |
| scaffold41068 |
15549 |
15815 |
+ |
RS82 |
Unspecified |
| scaffold41068 |
15817 |
15919 |
+ |
PL363 |
Unspecified |
| scaffold41068 |
15918 |
17316 |
- |
RS217 |
Unspecified |
| scaffold41068 |
16574 |
17615 |
- |
RS215 |
Unspecified |
| scaffold41068 |
17724 |
17765 |
+ |
A-rich |
Low_complexity |
| scaffold41068 |
18554 |
18607 |
+ |
(ATATCT)n |
Simple_repeat |
| scaffold41068 |
18605 |
18638 |
+ |
A-rich |
Low_complexity |
| scaffold41068 |
18782 |
18829 |
+ |
A-rich |
Low_complexity |
| scaffold41068 |
19111 |
19222 |
- |
PL625 |
Unspecified |
| scaffold41068 |
20001 |
20188 |
- |
PL712 |
Unspecified |
| scaffold41068 |
20418 |
20467 |
+ |
(ATATAG)n |
Simple_repeat |
| scaffold41068 |
20465 |
20760 |
+ |
PL363 |
Unspecified |
| scaffold41068 |
20989 |
21021 |
+ |
(T)n |
Simple_repeat |
| scaffold41068 |
29600 |
29657 |
+ |
(TTGTA)n |
Simple_repeat |
| scaffold41068 |
31141 |
31169 |
+ |
(TCTTC)n |
Simple_repeat |
| scaffold41068 |
31205 |
31237 |
+ |
(ACAAA)n |
Simple_repeat |
| scaffold41068 |
31907 |
31928 |
+ |
(TTTA)n |
Simple_repeat |
| scaffold41068 |
34687 |
34792 |
+ |
(TTCAG)n |
Simple_repeat |
| scaffold41068 |
35498 |
35533 |
+ |
A-rich |
Low_complexity |
| scaffold41068 |
37588 |
37628 |
+ |
(ATGATAC)n |
Simple_repeat |
| scaffold41068 |
38010 |
38429 |
- |
cacta |
cacta(TransposonPSI) |
| scaffold41068 |
38562 |
40352 |
- |
cacta |
cacta(TransposonPSI) |
| scaffold41068 |
38758 |
39818 |
- |
EnSpm-9_STu |
DNA/CMC-EnSpm |
| scaffold41068 |
42096 |
42168 |
- |
PL622 |
Unspecified |
| scaffold41068 |
42236 |
42358 |
- |
RS16757 |
Unspecified |
| scaffold41068 |
42256 |
42596 |
- |
RS224 |
Unspecified |
| scaffold41068 |
42710 |
42807 |
+ |
RS16382 |
Unspecified |
| scaffold41068 |
42835 |
42860 |
+ |
(AGAAA)n |
Simple_repeat |
| scaffold41068 |
43387 |
43649 |
- |
RS365 |
Unspecified |
| scaffold41068 |
43914 |
43933 |
+ |
(A)n |
Simple_repeat |
| scaffold41068 |
44166 |
45809 |
- |
Copia-82_GM-I |
LTR/Copia |
| scaffold41068 |
46202 |
47291 |
- |
Copia-32-I_VV |
LTR/Copia |
| scaffold41068 |
47713 |
48504 |
- |
TY1_Copia |
TY1_Copia(TransposonPSI) |
| scaffold41068 |
48070 |
48460 |
- |
Copia-32-I_VV |
LTR/Copia |
| scaffold41068 |
49655 |
49717 |
+ |
(T)n |
Simple_repeat |
| scaffold41068 |
49747 |
50170 |
- |
PL439 |
Unspecified |
| scaffold41068 |
50359 |
50429 |
+ |
(GAT)n |
Simple_repeat |
| scaffold41068 |
50524 |
50757 |
- |
PL232 |
Unspecified |
| scaffold41068 |
50785 |
50848 |
+ |
A-rich |
Low_complexity |
| scaffold41068 |
52362 |
52432 |
+ |
A-rich |
Low_complexity |
| scaffold41068 |
53517 |
53551 |
+ |
(A)n |
Simple_repeat |
| scaffold41068 |
53608 |
53781 |
+ |
PL712 |
Unspecified |
| scaffold41068 |
56314 |
56388 |
+ |
(AAGATG)n |
Simple_repeat |
| scaffold41068 |
56866 |
57159 |
+ |
(T)n |
Simple_repeat |
| scaffold41068 |
56866 |
56903 |
+ |
(T)n |
Simple_repeat |
| scaffold41068 |
56892 |
57159 |
- |
RS3188 |
Unspecified |
| scaffold41068 |
57125 |
57289 |
- |
RS2189 |
Unspecified |
| scaffold41068 |
60796 |
61270 |
+ |
PL344 |
Unspecified |
| scaffold41068 |
60946 |
61334 |
+ |
RS2963 |
Unspecified |
| scaffold41068 |
61474 |
61546 |
+ |
GA-rich |
Low_complexity |
| scaffold41068 |
62102 |
62230 |
+ |
(GTT)n |
Simple_repeat |
| scaffold41068 |
62582 |
62608 |
+ |
(CATC)n |
Simple_repeat |
| scaffold41068 |
63097 |
63191 |
+ |
(TATTTTA)n |
Simple_repeat |
| scaffold41068 |
63741 |
64387 |
- |
L1-1_GM |
LINE/L1 |
| scaffold41068 |
64782 |
65115 |
- |
EnSpm-11_STu |
DNA/CMC-EnSpm |
| scaffold41068 |
66745 |
66793 |
+ |
LINE1G_MT |
LINE/L1 |
| scaffold41068 |
66988 |
67843 |
+ |
L1-1_GM |
LINE/L1 |
| scaffold41068 |
69633 |
69670 |
- |
Sat-1_CPa |
Satellite |
| scaffold41068 |
69671 |
69723 |
- |
EnSpm1_SB |
DNA/CMC-EnSpm |
| scaffold41068 |
69724 |
69749 |
- |
Sat-1_CPa |
Satellite |
| scaffold41068 |
69890 |
70298 |
+ |
RS1834 |
Unspecified |
| scaffold41068 |
71001 |
71194 |
+ |
(TCGGG)n |
Simple_repeat |
| scaffold41068 |
71341 |
71503 |
+ |
(TCGGG)n |
Simple_repeat |
| scaffold41068 |
71708 |
71735 |
+ |
(A)n |
Simple_repeat |
| scaffold41068 |
72023 |
72162 |
- |
RS509 |
Unspecified |
| scaffold41068 |
72200 |
72598 |
- |
RS29 |
Unspecified |
| scaffold41068 |
72797 |
72986 |
- |
RS14987 |
Unspecified |
| scaffold41068 |
72818 |
73060 |
+ |
RS4 |
Unspecified |
| scaffold41068 |
75474 |
75579 |
- |
PL340 |
Unspecified |
| scaffold41068 |
76479 |
76552 |
+ |
(TTCAG)n |
Simple_repeat |
| scaffold41068 |
76560 |
76608 |
+ |
(TTCAA)n |
Simple_repeat |
| scaffold41068 |
76638 |
76747 |
+ |
(TTCAG)n |
Simple_repeat |
| scaffold41068 |
77107 |
77796 |
+ |
PL532 |
Unspecified |
| scaffold41068 |
80820 |
81080 |
+ |
RS26 |
Unspecified |
| scaffold41068 |
81079 |
81210 |
+ |
RS69 |
Unspecified |
| scaffold41068 |
81439 |
81476 |
+ |
(TATGT)n |
Simple_repeat |
| scaffold41068 |
81713 |
81796 |
+ |
(TGATCT)n |
Simple_repeat |
| scaffold41068 |
81787 |
81846 |
+ |
(TTTGTT)n |
Simple_repeat |
| scaffold41068 |
82218 |
82323 |
+ |
RS5093 |
Unspecified |
| scaffold41068 |
89129 |
89165 |
+ |
A-rich |
Low_complexity |
| scaffold41068 |
89214 |
90171 |
- |
RS402 |
Unspecified |
| scaffold41068 |
90438 |
90496 |
+ |
Alfare1_I-int |
LTR/Copia? |
| scaffold41068 |
90450 |
90567 |
+ |
Athila8A_I-int |
LTR/Gypsy |
| scaffold41068 |
90624 |
90649 |
+ |
(A)n |
Simple_repeat |
| scaffold41068 |
90708 |
90764 |
+ |
Copia29-VV_I-int |
LTR/Copia |
| scaffold41068 |
90778 |
90818 |
+ |
(AGAGAGC)n |
Simple_repeat |
| scaffold41068 |
91082 |
91225 |
+ |
RS3609 |
Unspecified |
| scaffold41068 |
91221 |
91337 |
- |
RS2942 |
Unspecified |
| scaffold41068 |
91802 |
91853 |
+ |
Gypsy-10_Mad-I |
LTR/Gypsy |
| scaffold41068 |
93556 |
93759 |
- |
PL804 |
Unspecified |
| scaffold41068 |
93826 |
93910 |
+ |
(CA)n |
Simple_repeat |
| scaffold41068 |
94775 |
94839 |
+ |
(ATT)n |
Simple_repeat |
| scaffold41068 |
95248 |
95274 |
+ |
A-rich |
Low_complexity |
| scaffold41068 |
95323 |
95457 |
- |
MtPH-A6-2-Ia |
DNA/PIF-Harbinger |
| scaffold41068 |
96149 |
96322 |
- |
RS7855 |
Unspecified |
| scaffold41068 |
97049 |
97093 |
+ |
(ATG)n |
Simple_repeat |
| scaffold41068 |
97366 |
97432 |
+ |
(AATAG)n |
Simple_repeat |
| scaffold41068 |
98237 |
98540 |
+ |
PL350 |
Unspecified |
| scaffold41068 |
98551 |
99070 |
+ |
PL919 |
Unspecified |
| scaffold41068 |
98825 |
99107 |
- |
PL494 |
Unspecified |
| scaffold41068 |
99356 |
99555 |
- |
RS654 |
Unspecified |
| scaffold41068 |
99410 |
99581 |
- |
RS1775 |
Unspecified |
| scaffold41068 |
99723 |
99921 |
- |
RS2146 |
Unspecified |
| scaffold41068 |
99963 |
100112 |
- |
L1-4_VC |
LINE/L1 |
| scaffold41068 |
99988 |
100115 |
+ |
(TTG)n |
Simple_repeat |
| scaffold41068 |
100786 |
100857 |
- |
Gypsy-13_TA-I |
LTR/Gypsy |
| scaffold41068 |
101137 |
101171 |
+ |
A-rich |
Low_complexity |
| scaffold41068 |
101919 |
102120 |
+ |
RS1669 |
Unspecified |
| scaffold41068 |
102774 |
102830 |
+ |
A-rich |
Low_complexity |
| scaffold41068 |
103917 |
103959 |
+ |
A-rich |
Low_complexity |
| scaffold41068 |
103997 |
104025 |
+ |
(AC)n |
Simple_repeat |
| scaffold41068 |
104514 |
104543 |
+ |
(CGCCCG)n |
Simple_repeat |
| scaffold41068 |
105842 |
105885 |
+ |
(ATTTTCG)n |
Simple_repeat |
| scaffold41068 |
108613 |
108643 |
+ |
(GCC)n |
Simple_repeat |
| scaffold41068 |
110768 |
110871 |
+ |
Gypsy-53_GM-I |
LTR/Gypsy |
| scaffold41068 |
111908 |
113572 |
+ |
Gypsy-53_GM-I |
LTR/Gypsy |
| scaffold41068 |
113912 |
114229 |
+ |
Gypsy-53_GM-I |
LTR/Gypsy |
| scaffold41068 |
114207 |
114905 |
+ |
(AT)n |
Simple_repeat |
| scaffold41068 |
114863 |
114905 |
+ |
(AT)n |
Simple_repeat |
| scaffold41068 |
114996 |
115004 |
+ |
(ACAAAAA)n |
Simple_repeat |
| scaffold41068 |
115005 |
115032 |
+ |
(A)n |
Simple_repeat |
| scaffold41068 |
115139 |
115172 |
+ |
(TCTTCC)n |
Simple_repeat |
| scaffold41068 |
115612 |
115676 |
+ |
(TTTAATA)n |
Simple_repeat |
| scaffold41068 |
116006 |
116073 |
+ |
A-rich |
Low_complexity |
| scaffold41068 |
116310 |
116401 |
- |
RS5857 |
Unspecified |
| scaffold41068 |
116418 |
116567 |
- |
RS5857 |
Unspecified |
| scaffold41068 |
116583 |
116699 |
- |
RS5857 |
Unspecified |
| scaffold41068 |
116818 |
116867 |
+ |
A-rich |
Low_complexity |
| scaffold41068 |
120695 |
120894 |
+ |
(TTA)n |
Simple_repeat |
| scaffold41068 |
121680 |
121828 |
- |
RS3577 |
Unspecified |
| scaffold41068 |
121921 |
121948 |
+ |
(A)n |
Simple_repeat |
| scaffold41068 |
124130 |
124641 |
+ |
RS1216 |
Unspecified |
| scaffold41068 |
124528 |
124658 |
+ |
RS6367 |
Unspecified |
| scaffold41068 |
125096 |
126399 |
- |
L1-5_STu |
LINE/L1 |
| scaffold41068 |
128592 |
128774 |
+ |
RS5504 |
Unspecified |
| scaffold41068 |
128865 |
128903 |
+ |
(A)n |
Simple_repeat |
| scaffold41068 |
128977 |
129031 |
+ |
(A)n |
Simple_repeat |
| scaffold41068 |
129772 |
129835 |
+ |
(TTTTTC)n |
Simple_repeat |
| scaffold41068 |
129853 |
129892 |
+ |
GA-rich |
Low_complexity |
| scaffold41068 |
130152 |
130193 |
+ |
(GAGGGAAGGG)n |
Simple_repeat |
| scaffold41068 |
130355 |
130385 |
+ |
(TTCCC)n |
Simple_repeat |
| scaffold41068 |
130402 |
130587 |
+ |
RS364 |
Unspecified |
| scaffold41068 |
130600 |
130646 |
+ |
(ATTTTAT)n |
Simple_repeat |
| scaffold41068 |
131053 |
131258 |
+ |
RS364 |
Unspecified |
| scaffold41068 |
131105 |
131481 |
+ |
PL301 |
Unspecified |
| scaffold41068 |
131480 |
131703 |
+ |
GA-rich |
Low_complexity |
| scaffold41068 |
131659 |
131703 |
+ |
GA-rich |
Low_complexity |
| scaffold41068 |
132261 |
132527 |
- |
RS106 |
Unspecified |
| scaffold41068 |
134319 |
134365 |
+ |
(TTTAT)n |
Simple_repeat |
| scaffold41068 |
138249 |
138294 |
+ |
(TTTATT)n |
Simple_repeat |
| scaffold41068 |
138414 |
138475 |
- |
HAT-N9_Mad |
DNA/hAT-Ac |
| scaffold41068 |
140092 |
140131 |
+ |
(CAAT)n |
Simple_repeat |
| scaffold41068 |
140366 |
140449 |
+ |
(GTTT)n |
Simple_repeat |
| scaffold41068 |
142211 |
142285 |
+ |
(TATTCAA)n |
Simple_repeat |
| scaffold41068 |
142304 |
142458 |
+ |
(ATATCTAAAA)n |
Simple_repeat |