scaffold41282 Repeat List
| genome |
start |
end |
strand |
repeat-name |
repeat-class |
| scaffold41282 |
398 |
490 |
+ |
(GTGTTT)n |
Simple_repeat |
| scaffold41282 |
665 |
701 |
+ |
(T)n |
Simple_repeat |
| scaffold41282 |
1502 |
1566 |
- |
ATHATN1 |
DNA/hAT-Ac |
| scaffold41282 |
1938 |
2026 |
+ |
hAT-17N1_ZM |
DNA/hAT-Ac |
| scaffold41282 |
2046 |
2111 |
+ |
(ATCGGAT)n |
Simple_repeat |
| scaffold41282 |
3172 |
3802 |
- |
PL530 |
Unspecified |
| scaffold41282 |
6868 |
6951 |
+ |
PL704 |
Unspecified |
| scaffold41282 |
6977 |
7030 |
+ |
(CAA)n |
Simple_repeat |
| scaffold41282 |
7215 |
7274 |
+ |
(TGGATC)n |
Simple_repeat |
| scaffold41282 |
7877 |
7932 |
+ |
G-rich |
Low_complexity |
| scaffold41282 |
8021 |
8372 |
+ |
RS4664 |
Unspecified |
| scaffold41282 |
9064 |
9124 |
+ |
(TCACTAA)n |
Simple_repeat |
| scaffold41282 |
10219 |
10252 |
- |
PL136 |
Unspecified |
| scaffold41282 |
10933 |
10954 |
+ |
(A)n |
Simple_repeat |
| scaffold41282 |
11201 |
11230 |
+ |
(T)n |
Simple_repeat |
| scaffold41282 |
12042 |
12062 |
+ |
(C)n |
Simple_repeat |
| scaffold41282 |
12172 |
12227 |
- |
LINE1-40_ZM |
LINE/L1 |
| scaffold41282 |
12743 |
13042 |
- |
SHALINE8_MT |
LINE/L1 |
| scaffold41282 |
13151 |
13171 |
+ |
(T)n |
Simple_repeat |
| scaffold41282 |
13343 |
13516 |
- |
RS233 |
Unspecified |
| scaffold41282 |
13362 |
13523 |
+ |
RS2719 |
Unspecified |
| scaffold41282 |
14520 |
14564 |
+ |
(ATTTT)n |
Simple_repeat |
| scaffold41282 |
15041 |
15069 |
+ |
(AAT)n |
Simple_repeat |
| scaffold41282 |
15484 |
15545 |
+ |
(ATTAATC)n |
Simple_repeat |
| scaffold41282 |
15559 |
15803 |
- |
RS16888 |
Unspecified |
| scaffold41282 |
15839 |
16162 |
- |
PL329 |
Unspecified |
| scaffold41282 |
16206 |
16852 |
+ |
PL700 |
Unspecified |
| scaffold41282 |
17331 |
17563 |
- |
RS527 |
Unspecified |
| scaffold41282 |
17587 |
17767 |
+ |
(ACTTTAA)n |
Simple_repeat |
| scaffold41282 |
17708 |
17767 |
+ |
(ACTTTAA)n |
Simple_repeat |
| scaffold41282 |
18180 |
18238 |
+ |
STOWAWAY2_SB |
DNA/TcMar-Stowaway |
| scaffold41282 |
19677 |
19702 |
+ |
(TCCCT)n |
Simple_repeat |
| scaffold41282 |
23286 |
23550 |
- |
RS10 |
Unspecified |
| scaffold41282 |
23715 |
23766 |
+ |
(TTC)n |
Simple_repeat |
| scaffold41282 |
24326 |
24471 |
- |
SHAMET |
DNA/TcMar-Stowaway |
| scaffold41282 |
25292 |
25327 |
+ |
GA-rich |
Low_complexity |
| scaffold41282 |
25370 |
25597 |
+ |
RS5602 |
Unspecified |
| scaffold41282 |
25477 |
25619 |
- |
RS992 |
Unspecified |
| scaffold41282 |
26333 |
26379 |
+ |
(TAT)n |
Simple_repeat |
| scaffold41282 |
26473 |
26665 |
+ |
RS10690 |
Unspecified |
| scaffold41282 |
26540 |
26703 |
- |
RS2360 |
Unspecified |
| scaffold41282 |
26876 |
27759 |
+ |
LINE1-66_SBi |
LINE/L1 |
| scaffold41282 |
27961 |
28153 |
+ |
LINE1-60_SBi |
LINE/L1 |
| scaffold41282 |
28164 |
28279 |
- |
RS5179 |
Unspecified |
| scaffold41282 |
28453 |
28576 |
+ |
RS4183 |
Unspecified |
| scaffold41282 |
28904 |
29113 |
- |
RS4183 |
Unspecified |
| scaffold41282 |
29104 |
29222 |
+ |
(TGTTT)n |
Simple_repeat |
| scaffold41282 |
29284 |
29396 |
+ |
RS5179 |
Unspecified |
| scaffold41282 |
29768 |
29823 |
+ |
(TTTTAA)n |
Simple_repeat |
| scaffold41282 |
30504 |
30571 |
+ |
RS4 |
Unspecified |
| scaffold41282 |
30682 |
30692 |
+ |
(TATAA)n |
Simple_repeat |
| scaffold41282 |
30693 |
30775 |
+ |
(AT)n |
Simple_repeat |
| scaffold41282 |
30820 |
30862 |
+ |
A-rich |
Low_complexity |
| scaffold41282 |
30936 |
31198 |
+ |
RS109 |
Unspecified |
| scaffold41282 |
31197 |
31544 |
- |
PL469 |
Unspecified |
| scaffold41282 |
31546 |
31577 |
+ |
(T)n |
Simple_repeat |
| scaffold41282 |
32560 |
33179 |
+ |
(CTA)n |
Simple_repeat |
| scaffold41282 |
33116 |
33179 |
+ |
(CTA)n |
Simple_repeat |
| scaffold41282 |
33545 |
34083 |
- |
RS2725 |
Unspecified |
| scaffold41282 |
34079 |
35489 |
- |
RS934 |
Unspecified |
| scaffold41282 |
35731 |
36263 |
+ |
Copia-84_VV-I |
LTR/Copia |
| scaffold41282 |
36930 |
37474 |
- |
RS454 |
Unspecified |
| scaffold41282 |
37654 |
37862 |
- |
RS2090 |
Unspecified |
| scaffold41282 |
38077 |
38288 |
- |
RS2863 |
Unspecified |
| scaffold41282 |
38157 |
38633 |
+ |
RS12063 |
Unspecified |
| scaffold41282 |
39247 |
39281 |
+ |
(TTATG)n |
Simple_repeat |
| scaffold41282 |
39547 |
39581 |
+ |
(T)n |
Simple_repeat |
| scaffold41282 |
39594 |
39774 |
+ |
RS4361 |
Unspecified |
| scaffold41282 |
41346 |
41367 |
+ |
(A)n |
Simple_repeat |
| scaffold41282 |
42087 |
42214 |
- |
RS13077 |
Unspecified |
| scaffold41282 |
42922 |
42952 |
+ |
(TTCCC)n |
Simple_repeat |
| scaffold41282 |
44344 |
44490 |
+ |
RS12418 |
Unspecified |
| scaffold41282 |
44892 |
44933 |
+ |
(ATTGTA)n |
Simple_repeat |
| scaffold41282 |
45283 |
45312 |
+ |
(TTG)n |
Simple_repeat |
| scaffold41282 |
46413 |
47177 |
+ |
RS3571 |
Unspecified |
| scaffold41282 |
47267 |
47582 |
+ |
RS1429 |
Unspecified |
| scaffold41282 |
47597 |
47725 |
+ |
RS10479 |
Unspecified |
| scaffold41282 |
47985 |
48132 |
+ |
(CAGTT)n |
Simple_repeat |
| scaffold41282 |
48739 |
48755 |
+ |
(A)n |
Simple_repeat |
| scaffold41282 |
48909 |
48965 |
+ |
(AAT)n |
Simple_repeat |
| scaffold41282 |
48991 |
49283 |
- |
RS1056 |
Unspecified |
| scaffold41282 |
49331 |
49349 |
+ |
(A)n |
Simple_repeat |
| scaffold41282 |
49423 |
49447 |
+ |
(T)n |
Simple_repeat |
| scaffold41282 |
49524 |
49571 |
+ |
(TGT)n |
Simple_repeat |
| scaffold41282 |
51067 |
51565 |
+ |
RS4420 |
Unspecified |
| scaffold41282 |
51780 |
52094 |
+ |
RS1429 |
Unspecified |
| scaffold41282 |
51986 |
52117 |
+ |
RS3915 |
Unspecified |
| scaffold41282 |
52109 |
52182 |
+ |
RS10479 |
Unspecified |
| scaffold41282 |
52431 |
52904 |
+ |
PL565 |
Unspecified |
| scaffold41282 |
53168 |
53360 |
- |
RS3580 |
Unspecified |
| scaffold41282 |
53812 |
54299 |
+ |
RS9976 |
Unspecified |
| scaffold41282 |
57166 |
57214 |
+ |
(AT)n |
Simple_repeat |
| scaffold41282 |
57705 |
57757 |
+ |
Copia-85_ST-I |
LTR/Copia |
| scaffold41282 |
57722 |
57831 |
+ |
ZhAT8_ZM |
DNA/hAT-Ac |
| scaffold41282 |
57758 |
57846 |
+ |
ATGP11_LTR |
LTR/Gypsy |
| scaffold41282 |
58112 |
58355 |
+ |
Copia-85_ST-I |
LTR/Copia |
| scaffold41282 |
58112 |
58532 |
+ |
Copia-85_ST-I |
LTR/Copia |
| scaffold41282 |
58313 |
58532 |
+ |
RS1332 |
Unspecified |
| scaffold41282 |
59020 |
59071 |
+ |
(T)n |
Simple_repeat |
| scaffold41282 |
59135 |
59176 |
+ |
PL375 |
Unspecified |
| scaffold41282 |
59239 |
59255 |
+ |
(A)n |
Simple_repeat |
| scaffold41282 |
59263 |
59325 |
+ |
(CAATT)n |
Simple_repeat |
| scaffold41282 |
59577 |
59715 |
+ |
(GTG)n |
Simple_repeat |
| scaffold41282 |
59718 |
59850 |
+ |
RS9351 |
Unspecified |
| scaffold41282 |
59810 |
59856 |
- |
PL201 |
Unspecified |
| scaffold41282 |
59854 |
60059 |
- |
PL825 |
Unspecified |
| scaffold41282 |
60052 |
60330 |
- |
RS1529 |
Unspecified |
| scaffold41282 |
60602 |
60675 |
+ |
(GCGCCTT)n |
Simple_repeat |
| scaffold41282 |
60688 |
61545 |
- |
RS1529 |
Unspecified |
| scaffold41282 |
61545 |
61747 |
- |
RS239 |
Unspecified |
| scaffold41282 |
62260 |
62290 |
+ |
(AAAATAA)n |
Simple_repeat |
| scaffold41282 |
62604 |
62637 |
+ |
(T)n |
Simple_repeat |
| scaffold41282 |
63078 |
63106 |
+ |
(TAAAAT)n |
Simple_repeat |
| scaffold41282 |
63537 |
63594 |
+ |
(AATAT)n |
Simple_repeat |
| scaffold41282 |
63762 |
63878 |
+ |
PL370 |
Unspecified |
| scaffold41282 |
64049 |
64338 |
+ |
PL370 |
Unspecified |
| scaffold41282 |
64474 |
64492 |
+ |
(T)n |
Simple_repeat |
| scaffold41282 |
64504 |
64549 |
+ |
(ATTTA)n |
Simple_repeat |
| scaffold41282 |
64730 |
64750 |
+ |
(ATAA)n |
Simple_repeat |
| scaffold41282 |
65451 |
65473 |
+ |
(TGT)n |
Simple_repeat |
| scaffold41282 |
65570 |
65603 |
+ |
(T)n |
Simple_repeat |
| scaffold41282 |
66648 |
67411 |
+ |
RS3571 |
Unspecified |
| scaffold41282 |
67355 |
67511 |
+ |
RS14258 |
Unspecified |
| scaffold41282 |
68290 |
68665 |
+ |
RS4420 |
Unspecified |
| scaffold41282 |
68908 |
69099 |
+ |
RS1429 |
Unspecified |
| scaffold41282 |
74420 |
74595 |
+ |
RS1429 |
Unspecified |
| scaffold41282 |
74610 |
74739 |
+ |
RS10479 |
Unspecified |
| scaffold41282 |
75169 |
75220 |
+ |
(AGTCAA)n |
Simple_repeat |
| scaffold41282 |
75526 |
76025 |
+ |
RS218 |
Unspecified |
| scaffold41282 |
76127 |
76245 |
+ |
RS6344 |
Unspecified |
| scaffold41282 |
76844 |
76898 |
- |
RS10348 |
Unspecified |
| scaffold41282 |
76903 |
77086 |
+ |
RS4 |
Unspecified |
| scaffold41282 |
77094 |
77112 |
+ |
(A)n |
Simple_repeat |
| scaffold41282 |
77162 |
77190 |
+ |
(A)n |
Simple_repeat |
| scaffold41282 |
77831 |
77870 |
+ |
(TTG)n |
Simple_repeat |
| scaffold41282 |
78101 |
78262 |
- |
RS9415 |
Unspecified |
| scaffold41282 |
78798 |
79562 |
+ |
RS3571 |
Unspecified |
| scaffold41282 |
79273 |
79756 |
+ |
RS4420 |
Unspecified |
| scaffold41282 |
79826 |
80188 |
- |
RS5533 |
Unspecified |
| scaffold41282 |
80158 |
80552 |
+ |
RS11521 |
Unspecified |
| scaffold41282 |
80922 |
81264 |
+ |
RS6095 |
Unspecified |
| scaffold41282 |
81602 |
81958 |
+ |
RS13893 |
Unspecified |
| scaffold41282 |
82314 |
82600 |
+ |
A-rich |
Low_complexity |
| scaffold41282 |
82559 |
82600 |
+ |
A-rich |
Low_complexity |
| scaffold41282 |
82712 |
82782 |
+ |
(ATAAT)n |
Simple_repeat |
| scaffold41282 |
83306 |
83326 |
+ |
(ATAA)n |
Simple_repeat |
| scaffold41282 |
83527 |
83612 |
+ |
(CTGAA)n |
Simple_repeat |
| scaffold41282 |
84573 |
84924 |
+ |
RS5015 |
Unspecified |
| scaffold41282 |
84859 |
85230 |
+ |
RS14198 |
Unspecified |
| scaffold41282 |
85441 |
85826 |
+ |
RS29 |
Unspecified |
| scaffold41282 |
85863 |
86138 |
- |
RS1888 |
Unspecified |
| scaffold41282 |
86350 |
86578 |
- |
RS4635 |
Unspecified |
| scaffold41282 |
86623 |
86711 |
+ |
(ATTTCT)n |
Simple_repeat |
| scaffold41282 |
87159 |
87307 |
+ |
RS4216 |
Unspecified |
| scaffold41282 |
88197 |
88227 |
+ |
(CTG)n |
Simple_repeat |
| scaffold41282 |
88430 |
88458 |
+ |
(GAA)n |
Simple_repeat |
| scaffold41282 |
89048 |
89087 |
+ |
(TGCTGT)n |
Simple_repeat |
| scaffold41282 |
90311 |
90654 |
+ |
RS5015 |
Unspecified |
| scaffold41282 |
90571 |
91021 |
+ |
RS14198 |
Unspecified |
| scaffold41282 |
91484 |
91524 |
+ |
(TTTTATT)n |
Simple_repeat |
| scaffold41282 |
92616 |
92708 |
- |
PL505 |
Unspecified |
| scaffold41282 |
92712 |
93273 |
+ |
RS72 |
Unspecified |
| scaffold41282 |
93314 |
93450 |
+ |
RS2376 |
Unspecified |
| scaffold41282 |
93422 |
93491 |
+ |
RS4174 |
Unspecified |
| scaffold41282 |
93693 |
93827 |
- |
RS10085 |
Unspecified |
| scaffold41282 |
93895 |
93920 |
+ |
(TTG)n |
Simple_repeat |
| scaffold41282 |
93895 |
94477 |
+ |
(TTG)n |
Simple_repeat |
| scaffold41282 |
93911 |
94477 |
+ |
PL95 |
Unspecified |
| scaffold41282 |
94466 |
94609 |
+ |
RS4174 |
Unspecified |
| scaffold41282 |
96585 |
96635 |
- |
HELMET |
RC/Helitron |
| scaffold41282 |
96632 |
96913 |
+ |
RS14162 |
Unspecified |
| scaffold41282 |
96974 |
97198 |
+ |
RS4420 |
Unspecified |
| scaffold41282 |
97028 |
97382 |
+ |
RS5015 |
Unspecified |
| scaffold41282 |
97902 |
98063 |
+ |
RS17883 |
Unspecified |
| scaffold41282 |
98014 |
98223 |
- |
RS16888 |
Unspecified |
| scaffold41282 |
98090 |
98233 |
+ |
RS14508 |
Unspecified |
| scaffold41282 |
98250 |
98378 |
+ |
(CCCGA)n |
Simple_repeat |
| scaffold41282 |
98545 |
98652 |
+ |
(CCCGA)n |
Simple_repeat |
| scaffold41282 |
98869 |
98912 |
+ |
(GTC)n |
Simple_repeat |
| scaffold41282 |
100311 |
100666 |
+ |
RS5015 |
Unspecified |
| scaffold41282 |
100583 |
101000 |
+ |
RS14198 |
Unspecified |
| scaffold41282 |
101594 |
101633 |
+ |
A-rich |
Low_complexity |
| scaffold41282 |
101594 |
101661 |
+ |
A-rich |
Low_complexity |
| scaffold41282 |
101628 |
101661 |
+ |
RS2376 |
Unspecified |
| scaffold41282 |
103306 |
103871 |
+ |
RS10207 |
Unspecified |
| scaffold41282 |
104624 |
104725 |
+ |
RS16366 |
Unspecified |
| scaffold41282 |
105531 |
105698 |
- |
Copia-3_PTri-I |
LTR/Copia |
| scaffold41282 |
105699 |
105770 |
- |
Copia-3_PTri-I |
LTR/Copia |
| scaffold41282 |
106333 |
106366 |
+ |
(TTTA)n |
Simple_repeat |
| scaffold41282 |
110344 |
110605 |
- |
RS109 |
Unspecified |
| scaffold41282 |
110661 |
110706 |
+ |
A-rich |
Low_complexity |
| scaffold41282 |
110713 |
110807 |
+ |
(ACTGA)n |
Simple_repeat |
| scaffold41282 |
110848 |
110916 |
+ |
(TGAAC)n |
Simple_repeat |
| scaffold41282 |
110934 |
111073 |
- |
RS5949 |
Unspecified |
| scaffold41282 |
111102 |
111216 |
- |
RS6320 |
Unspecified |
| scaffold41282 |
111102 |
111200 |
+ |
RS16382 |
Unspecified |
| scaffold41282 |
111252 |
111443 |
+ |
(TGAAC)n |
Simple_repeat |
| scaffold41282 |
111483 |
111607 |
- |
RS5949 |
Unspecified |
| scaffold41282 |
111531 |
111659 |
+ |
RS9167 |
Unspecified |
| scaffold41282 |
111690 |
111742 |
+ |
RS973 |
Unspecified |
| scaffold41282 |
111742 |
112278 |
- |
PL753 |
Unspecified |
| scaffold41282 |
112274 |
112430 |
+ |
RS973 |
Unspecified |
| scaffold41282 |
112734 |
112863 |
+ |
RS8011 |
Unspecified |
| scaffold41282 |
112879 |
113014 |
+ |
(TCTGAAGTTT)n |
Simple_repeat |
| scaffold41282 |
113513 |
113635 |
+ |
RS4 |
Unspecified |