scaffold421 Repeat List
| genome |
start |
end |
strand |
repeat-name |
repeat-class |
| scaffold421 |
1 |
163 |
- |
PL166 |
Unspecified |
| scaffold421 |
184 |
365 |
+ |
RS7374 |
Unspecified |
| scaffold421 |
547 |
595 |
+ |
(AATAA)n |
Simple_repeat |
| scaffold421 |
547 |
666 |
+ |
(AATAA)n |
Simple_repeat |
| scaffold421 |
583 |
666 |
+ |
RS18022 |
Unspecified |
| scaffold421 |
596 |
747 |
- |
RS987 |
Unspecified |
| scaffold421 |
1801 |
1833 |
+ |
(T)n |
Simple_repeat |
| scaffold421 |
2368 |
2390 |
+ |
(T)n |
Simple_repeat |
| scaffold421 |
2419 |
2605 |
- |
ENSPM_AC |
DNA/En-Spm |
| scaffold421 |
2866 |
2914 |
- |
ENSPM_AC |
DNA/En-Spm |
| scaffold421 |
3895 |
3941 |
+ |
(TCTCTT)n |
Simple_repeat |
| scaffold421 |
4218 |
4234 |
+ |
(T)n |
Simple_repeat |
| scaffold421 |
4916 |
4937 |
+ |
(A)n |
Simple_repeat |
| scaffold421 |
5315 |
5349 |
+ |
A-rich |
Low_complexity |
| scaffold421 |
5753 |
5838 |
+ |
LTR-7_Mad-LTR |
LTR |
| scaffold421 |
5931 |
6213 |
- |
PL700 |
Unspecified |
| scaffold421 |
6311 |
6395 |
+ |
LTR-7_Mad-LTR |
LTR |
| scaffold421 |
7661 |
7688 |
+ |
(ATAAT)n |
Simple_repeat |
| scaffold421 |
7747 |
7828 |
+ |
A-rich |
Low_complexity |
| scaffold421 |
8934 |
9010 |
+ |
(ATACAAT)n |
Simple_repeat |
| scaffold421 |
9006 |
9119 |
- |
RS212 |
Unspecified |
| scaffold421 |
9243 |
9457 |
+ |
RS29 |
Unspecified |
| scaffold421 |
9473 |
9649 |
+ |
RS7668 |
Unspecified |
| scaffold421 |
9496 |
9697 |
+ |
RS1286 |
Unspecified |
| scaffold421 |
9697 |
9837 |
+ |
RS29 |
Unspecified |
| scaffold421 |
9966 |
10003 |
+ |
RS380 |
Unspecified |
| scaffold421 |
10002 |
10270 |
+ |
PL393 |
Unspecified |
| scaffold421 |
10372 |
10423 |
+ |
(TTTATA)n |
Simple_repeat |
| scaffold421 |
10780 |
10890 |
+ |
(TCTGAAGTTT)n |
Simple_repeat |
| scaffold421 |
10905 |
11323 |
+ |
PL729 |
Unspecified |
| scaffold421 |
11379 |
11416 |
+ |
(TTTTA)n |
Simple_repeat |
| scaffold421 |
12695 |
13166 |
- |
RS4219 |
Unspecified |
| scaffold421 |
12844 |
13625 |
- |
RS879 |
Unspecified |
| scaffold421 |
13419 |
13876 |
- |
RS879 |
Unspecified |
| scaffold421 |
14567 |
14880 |
+ |
RS402 |
Unspecified |
| scaffold421 |
15405 |
15849 |
+ |
PL352 |
Unspecified |
| scaffold421 |
16068 |
16490 |
+ |
PL508 |
Unspecified |
| scaffold421 |
17328 |
17532 |
- |
PL700 |
Unspecified |
| scaffold421 |
17568 |
17636 |
+ |
GA-rich |
Low_complexity |
| scaffold421 |
17997 |
18024 |
+ |
(TTAT)n |
Simple_repeat |
| scaffold421 |
18858 |
18951 |
- |
RS4475 |
Unspecified |
| scaffold421 |
19674 |
19707 |
+ |
A-rich |
Low_complexity |
| scaffold421 |
19835 |
19877 |
+ |
(AATTTTG)n |
Simple_repeat |
| scaffold421 |
20395 |
20415 |
+ |
(T)n |
Simple_repeat |
| scaffold421 |
20395 |
20714 |
+ |
(T)n |
Simple_repeat |
| scaffold421 |
20406 |
20714 |
+ |
RS2386 |
Unspecified |
| scaffold421 |
20722 |
20784 |
- |
SINE2-1_STu |
SINE/tRNA |
| scaffold421 |
21002 |
21064 |
+ |
G-rich |
Low_complexity |
| scaffold421 |
21086 |
21119 |
+ |
(CGGGT)n |
Simple_repeat |
| scaffold421 |
21422 |
21454 |
+ |
(GGTCG)n |
Simple_repeat |
| scaffold421 |
21815 |
21846 |
+ |
(TCGTT)n |
Simple_repeat |
| scaffold421 |
22261 |
22632 |
- |
RS306 |
Unspecified |
| scaffold421 |
23583 |
23627 |
+ |
(ATAA)n |
Simple_repeat |
| scaffold421 |
24922 |
24977 |
+ |
(ATAA)n |
Simple_repeat |
| scaffold421 |
25311 |
25346 |
+ |
A-rich |
Low_complexity |
| scaffold421 |
25660 |
25935 |
+ |
RS214 |
Unspecified |
| scaffold421 |
26197 |
26232 |
+ |
A-rich |
Low_complexity |
| scaffold421 |
27026 |
27051 |
+ |
(AAAC)n |
Simple_repeat |
| scaffold421 |
27943 |
27969 |
+ |
(A)n |
Simple_repeat |
| scaffold421 |
31855 |
32046 |
- |
L1-1_STu |
LINE/L1 |
| scaffold421 |
33166 |
33608 |
- |
PL2 |
Unspecified |
| scaffold421 |
37345 |
37416 |
+ |
(ATGAGTG)n |
Simple_repeat |
| scaffold421 |
37750 |
37878 |
+ |
(CCCGA)n |
Simple_repeat |
| scaffold421 |
38537 |
38562 |
+ |
(AATG)n |
Simple_repeat |
| scaffold421 |
42504 |
42541 |
+ |
GA-rich |
Low_complexity |
| scaffold421 |
46901 |
46930 |
+ |
A-rich |
Low_complexity |
| scaffold421 |
50622 |
50643 |
+ |
(A)n |
Simple_repeat |
| scaffold421 |
52705 |
52775 |
+ |
A-rich |
Low_complexity |
| scaffold421 |
53081 |
53118 |
+ |
(GTT)n |
Simple_repeat |
| scaffold421 |
53336 |
53406 |
+ |
Copia-3_PTri-I |
LTR/Copia |
| scaffold421 |
53407 |
53602 |
+ |
Copia-3_PTri-I |
LTR/Copia |
| scaffold421 |
53923 |
53969 |
+ |
(ATTAA)n |
Simple_repeat |
| scaffold421 |
59179 |
59194 |
+ |
EnSpm1_SB |
DNA/CMC-EnSpm |
| scaffold421 |
59195 |
59273 |
+ |
(TTCAG)n |
Simple_repeat |
| scaffold421 |
59275 |
59534 |
+ |
(ATT)n |
Simple_repeat |
| scaffold421 |
59535 |
59611 |
+ |
EnSpm1_SB |
DNA/CMC-EnSpm |
| scaffold421 |
59786 |
59816 |
+ |
(TCA)n |
Simple_repeat |
| scaffold421 |
60248 |
60352 |
+ |
(CGAGCT)n |
Simple_repeat |
| scaffold421 |
60412 |
60513 |
+ |
RS11902 |
Unspecified |
| scaffold421 |
60557 |
60651 |
+ |
(TTCAG)n |
Simple_repeat |
| scaffold421 |
63930 |
64006 |
+ |
RS13301 |
Unspecified |
| scaffold421 |
64078 |
64143 |
+ |
RS13301 |
Unspecified |
| scaffold421 |
64165 |
64384 |
- |
RS1349 |
Unspecified |
| scaffold421 |
64519 |
64552 |
+ |
(A)n |
Simple_repeat |
| scaffold421 |
65777 |
65843 |
+ |
(AACA)n |
Simple_repeat |
| scaffold421 |
66332 |
66427 |
+ |
RS7678 |
Unspecified |
| scaffold421 |
66627 |
66759 |
- |
RS148 |
Unspecified |
| scaffold421 |
66779 |
67202 |
+ |
(TTAA)n |
Simple_repeat |
| scaffold421 |
67136 |
67202 |
+ |
(TTAA)n |
Simple_repeat |
| scaffold421 |
67216 |
67295 |
- |
RS1452 |
Unspecified |
| scaffold421 |
67293 |
67371 |
- |
RS148 |
Unspecified |
| scaffold421 |
67354 |
67437 |
- |
PL46 |
Unspecified |
| scaffold421 |
67365 |
67461 |
- |
RS9351 |
Unspecified |
| scaffold421 |
67483 |
67543 |
+ |
(AAT)n |
Simple_repeat |
| scaffold421 |
67558 |
67634 |
+ |
(AAT)n |
Simple_repeat |
| scaffold421 |
67671 |
67772 |
- |
RS12427 |
Unspecified |
| scaffold421 |
67779 |
67912 |
- |
RS2038 |
Unspecified |
| scaffold421 |
67911 |
68016 |
+ |
RS1763 |
Unspecified |
| scaffold421 |
67961 |
68030 |
+ |
RS4999 |
Unspecified |
| scaffold421 |
69216 |
69320 |
- |
RS148 |
Unspecified |
| scaffold421 |
69343 |
69709 |
+ |
RS1221 |
Unspecified |
| scaffold421 |
69790 |
69815 |
+ |
(A)n |
Simple_repeat |
| scaffold421 |
69814 |
69858 |
- |
RS1452 |
Unspecified |
| scaffold421 |
69914 |
69942 |
+ |
(T)n |
Simple_repeat |
| scaffold421 |
70142 |
70201 |
+ |
(CTTTTT)n |
Simple_repeat |
| scaffold421 |
70233 |
70259 |
+ |
(A)n |
Simple_repeat |
| scaffold421 |
70372 |
70396 |
+ |
(T)n |
Simple_repeat |
| scaffold421 |
71120 |
71167 |
+ |
A-rich |
Low_complexity |
| scaffold421 |
71303 |
71353 |
+ |
(A)n |
Simple_repeat |
| scaffold421 |
71406 |
71499 |
+ |
(CTGAA)n |
Simple_repeat |
| scaffold421 |
71524 |
71568 |
+ |
(CTGAA)n |
Simple_repeat |
| scaffold421 |
71996 |
72026 |
+ |
(AG)n |
Simple_repeat |
| scaffold421 |
72029 |
72150 |
- |
RS6464 |
Unspecified |
| scaffold421 |
72232 |
72256 |
+ |
(TCAT)n |
Simple_repeat |
| scaffold421 |
72286 |
72373 |
+ |
(TCT)n |
Simple_repeat |
| scaffold421 |
75130 |
75180 |
+ |
(ATGTTC)n |
Simple_repeat |
| scaffold421 |
75194 |
75241 |
+ |
(TTTGTT)n |
Simple_repeat |
| scaffold421 |
75529 |
75602 |
+ |
(TTAA)n |
Simple_repeat |
| scaffold421 |
75638 |
76134 |
+ |
PL929 |
Unspecified |
| scaffold421 |
76043 |
76314 |
- |
RS5078 |
Unspecified |
| scaffold421 |
81171 |
81246 |
+ |
A-rich |
Low_complexity |
| scaffold421 |
81171 |
81528 |
+ |
A-rich |
Low_complexity |
| scaffold421 |
81231 |
81528 |
- |
RS1048 |
Unspecified |
| scaffold421 |
81767 |
81980 |
- |
RS725 |
Unspecified |
| scaffold421 |
82085 |
82259 |
+ |
RS16466 |
Unspecified |
| scaffold421 |
82588 |
82807 |
+ |
(AT)n |
Simple_repeat |
| scaffold421 |
82781 |
82807 |
+ |
(AT)n |
Simple_repeat |
| scaffold421 |
83186 |
83233 |
+ |
(GTTCAAT)n |
Simple_repeat |
| scaffold421 |
83331 |
83392 |
+ |
(TCATCA)n |
Simple_repeat |
| scaffold421 |
83581 |
84461 |
- |
RS1926 |
Unspecified |
| scaffold421 |
84860 |
85019 |
+ |
RS8728 |
Unspecified |
| scaffold421 |
85366 |
85396 |
- |
EnSpm2_HV |
DNA/CMC-EnSpm |
| scaffold421 |
85571 |
85781 |
+ |
RS3010 |
Unspecified |
| scaffold421 |
85842 |
86159 |
+ |
RS866 |
Unspecified |
| scaffold421 |
85997 |
86566 |
+ |
PL148 |
Unspecified |
| scaffold421 |
86758 |
86960 |
- |
RS2188 |
Unspecified |
| scaffold421 |
86998 |
87038 |
+ |
A-rich |
Low_complexity |
| scaffold421 |
87045 |
87076 |
+ |
(A)n |
Simple_repeat |
| scaffold421 |
87423 |
87445 |
+ |
(TA)n |
Simple_repeat |
| scaffold421 |
88014 |
88085 |
+ |
(GGT)n |
Simple_repeat |
| scaffold421 |
88086 |
88100 |
+ |
(GGTAGT)n |
Simple_repeat |
| scaffold421 |
88209 |
88244 |
+ |
A-rich |
Low_complexity |
| scaffold421 |
88573 |
88623 |
+ |
(TA)n |
Simple_repeat |
| scaffold421 |
88735 |
88784 |
+ |
A-rich |
Low_complexity |
| scaffold421 |
88735 |
88959 |
+ |
A-rich |
Low_complexity |
| scaffold421 |
88769 |
88959 |
- |
RS6657 |
Unspecified |
| scaffold421 |
89330 |
89385 |
+ |
(AATTT)n |
Simple_repeat |
| scaffold421 |
89445 |
89643 |
+ |
RS2188 |
Unspecified |
| scaffold421 |
89503 |
89807 |
+ |
RS1247 |
Unspecified |
| scaffold421 |
89570 |
89856 |
- |
PL590 |
Unspecified |
| scaffold421 |
89719 |
89908 |
- |
RS1474 |
Unspecified |
| scaffold421 |
89808 |
89968 |
- |
RS1075 |
Unspecified |
| scaffold421 |
89970 |
90142 |
- |
RS295 |
Unspecified |
| scaffold421 |
90684 |
90710 |
+ |
(T)n |
Simple_repeat |
| scaffold421 |
92108 |
92610 |
- |
RS1474 |
Unspecified |
| scaffold421 |
92442 |
92813 |
+ |
RS1245 |
Unspecified |
| scaffold421 |
93194 |
93258 |
+ |
GA-rich |
Low_complexity |
| scaffold421 |
93345 |
93361 |
+ |
(T)n |
Simple_repeat |
| scaffold421 |
93843 |
93917 |
+ |
(GATTTT)n |
Simple_repeat |
| scaffold421 |
94553 |
94579 |
+ |
(T)n |
Simple_repeat |
| scaffold421 |
95488 |
95819 |
+ |
PL590 |
Unspecified |
| scaffold421 |
95553 |
95923 |
- |
RS1247 |
Unspecified |
| scaffold421 |
95884 |
96037 |
- |
RS866 |
Unspecified |
| scaffold421 |
95907 |
96225 |
- |
RS3010 |
Unspecified |
| scaffold421 |
96125 |
96314 |
+ |
RS1474 |
Unspecified |
| scaffold421 |
96177 |
96464 |
+ |
PL590 |
Unspecified |
| scaffold421 |
96226 |
96531 |
- |
RS1247 |
Unspecified |
| scaffold421 |
96391 |
96594 |
- |
RS2188 |
Unspecified |
| scaffold421 |
96461 |
96636 |
- |
RS8215 |
Unspecified |
| scaffold421 |
96786 |
96856 |
+ |
A-rich |
Low_complexity |
| scaffold421 |
96972 |
96995 |
+ |
(A)n |
Simple_repeat |
| scaffold421 |
97089 |
97114 |
+ |
(A)n |
Simple_repeat |
| scaffold421 |
97255 |
97287 |
+ |
(T)n |
Simple_repeat |
| scaffold421 |
98416 |
98441 |
+ |
(TA)n |
Simple_repeat |
| scaffold421 |
98561 |
98766 |
+ |
RS957 |
Unspecified |
| scaffold421 |
99930 |
99994 |
+ |
A-rich |
Low_complexity |
| scaffold421 |
100504 |
100553 |
+ |
A-rich |
Low_complexity |
| scaffold421 |
100797 |
100831 |
- |
Gypsy-38_Mad-I |
LTR/Gypsy |
| scaffold421 |
100838 |
100936 |
+ |
(AATT)n |
Simple_repeat |
| scaffold421 |
101416 |
101470 |
+ |
(AAT)n |
Simple_repeat |
| scaffold421 |
101886 |
101923 |
+ |
(TA)n |
Simple_repeat |
| scaffold421 |
101886 |
102161 |
+ |
(TA)n |
Simple_repeat |
| scaffold421 |
101915 |
102161 |
+ |
PL942 |
Unspecified |
| scaffold421 |
102162 |
102559 |
- |
Copia-66_GM-I |
LTR/Copia |
| scaffold421 |
102565 |
103067 |
- |
Copia-66_GM-I |
LTR/Copia |
| scaffold421 |
103074 |
103560 |
- |
Copia-66_GM-I |
LTR/Copia |
| scaffold421 |
103547 |
103977 |
- |
Copia-66_GM-I |
LTR/Copia |
| scaffold421 |
103959 |
105943 |
- |
Copia-66_GM-I |
LTR/Copia |
| scaffold421 |
106297 |
106334 |
+ |
(TCAG)n |
Simple_repeat |
| scaffold421 |
106401 |
106446 |
+ |
(TATTTT)n |
Simple_repeat |
| scaffold421 |
107230 |
107352 |
+ |
SHACOP15_LTR_MT |
LTR/Copia |
| scaffold421 |
107399 |
107579 |
+ |
RS9820 |
Unspecified |
| scaffold421 |
107995 |
108042 |
+ |
(TGA)n |
Simple_repeat |
| scaffold421 |
108863 |
109402 |
+ |
MuDR-1_PD |
DNA/MULE-MuDR |
| scaffold421 |
109623 |
109749 |
+ |
MUDSOLT1 |
DNA/MULE-MuDR |
| scaffold421 |
110260 |
110308 |
+ |
Arnold4 |
DNA/MULE-MuDR |
| scaffold421 |
110441 |
110539 |
+ |
(GCCACT)n |
Simple_repeat |
| scaffold421 |
110610 |
110657 |
+ |
(GTGT)n |
Simple_repeat |
| scaffold421 |
110675 |
111236 |
+ |
PL696 |
Unspecified |
| scaffold421 |
111253 |
111300 |
+ |
(GTGT)n |
Simple_repeat |
| scaffold421 |
111732 |
111766 |
+ |
A-rich |
Low_complexity |
| scaffold421 |
112072 |
112569 |
+ |
PL838 |
Unspecified |
| scaffold421 |
112700 |
112790 |
- |
Copia-64_GM-I |
LTR/Copia |
| scaffold421 |
112815 |
112924 |
- |
Copia-64_GM-I |
LTR/Copia |
| scaffold421 |
113682 |
113769 |
- |
Copia-64_GM-I |
LTR/Copia |
| scaffold421 |
113854 |
113908 |
+ |
(AAT)n |
Simple_repeat |
| scaffold421 |
114382 |
114703 |
+ |
RS7645 |
Unspecified |
| scaffold421 |
114732 |
114766 |
+ |
A-rich |
Low_complexity |
| scaffold421 |
114918 |
114950 |
+ |
(AGCTCA)n |
Simple_repeat |
| scaffold421 |
115657 |
115691 |
+ |
(A)n |
Simple_repeat |
| scaffold421 |
117810 |
117927 |
+ |
Copia-4_SL-LTR |
LTR/Copia |
| scaffold421 |
118634 |
118855 |
+ |
PL678 |
Unspecified |
| scaffold421 |
118858 |
119121 |
+ |
RS5756 |
Unspecified |
| scaffold421 |
119135 |
119823 |
+ |
RS1593 |
Unspecified |
| scaffold421 |
119816 |
120389 |
+ |
PL678 |
Unspecified |
| scaffold421 |
120742 |
120766 |
+ |
(T)n |
Simple_repeat |
| scaffold421 |
120897 |
121689 |
+ |
RS528 |
Unspecified |
| scaffold421 |
152423 |
152869 |
+ |
RS90 |
Unspecified |