scaffold4249 Repeat List
| genome |
start |
end |
strand |
repeat-name |
repeat-class |
| scaffold4249 |
1 |
959 |
- |
Gypsy-38_Mad-I |
LTR/Gypsy |
| scaffold4249 |
930 |
1012 |
- |
Gypsy-38_Mad-I |
LTR/Gypsy |
| scaffold4249 |
1136 |
1208 |
- |
Gypsy-206_ZM-I |
LTR/Gypsy |
| scaffold4249 |
1616 |
2180 |
- |
Gypsy-206_ZM-I |
LTR/Gypsy |
| scaffold4249 |
2228 |
2366 |
- |
Gypsy-206_ZM-I |
LTR/Gypsy |
| scaffold4249 |
2394 |
2428 |
- |
PL967 |
Unspecified |
| scaffold4249 |
2398 |
2522 |
+ |
RS9793 |
Unspecified |
| scaffold4249 |
2585 |
4543 |
- |
gypsy |
gypsy(TransposonPSI) |
| scaffold4249 |
2586 |
3323 |
- |
Gypsy-3_Pru-I |
LTR/Gypsy |
| scaffold4249 |
4479 |
4534 |
+ |
(TTG)n |
Simple_repeat |
| scaffold4249 |
5043 |
5163 |
- |
Gyp_I_MT-int |
LTR/Gypsy |
| scaffold4249 |
5601 |
6179 |
- |
PL347 |
Unspecified |
| scaffold4249 |
9873 |
10059 |
- |
PL827 |
Unspecified |
| scaffold4249 |
9968 |
10269 |
- |
RS1094 |
Unspecified |
| scaffold4249 |
10178 |
10349 |
- |
PL827 |
Unspecified |
| scaffold4249 |
10238 |
10399 |
- |
RS314 |
Unspecified |
| scaffold4249 |
10477 |
10770 |
- |
ATGP5LTR |
LTR/Gypsy |
| scaffold4249 |
10706 |
10770 |
- |
ATGP5LTR |
LTR/Gypsy |
| scaffold4249 |
10873 |
11922 |
- |
Gypsy-38_Mad-I |
LTR/Gypsy |
| scaffold4249 |
12328 |
12617 |
- |
Gypsy-38_Mad-I |
LTR/Gypsy |
| scaffold4249 |
14836 |
14967 |
- |
RS5871 |
Unspecified |
| scaffold4249 |
15365 |
15430 |
+ |
(CAGTT)n |
Simple_repeat |
| scaffold4249 |
15451 |
15529 |
+ |
(ATT)n |
Simple_repeat |
| scaffold4249 |
15581 |
15664 |
+ |
(TAA)n |
Simple_repeat |
| scaffold4249 |
15670 |
15878 |
- |
RS8 |
Unspecified |
| scaffold4249 |
16082 |
16161 |
+ |
RS14570 |
Unspecified |
| scaffold4249 |
16389 |
16491 |
+ |
RS7633 |
Unspecified |
| scaffold4249 |
16836 |
16898 |
- |
RS16582 |
Unspecified |
| scaffold4249 |
17084 |
17212 |
- |
Gypsy-21_ST-I |
LTR/Gypsy |
| scaffold4249 |
17084 |
18214 |
- |
Gypsy-21_ST-I |
LTR/Gypsy |
| scaffold4249 |
17161 |
18214 |
+ |
PL326 |
Unspecified |
| scaffold4249 |
18375 |
18527 |
- |
RS10603 |
Unspecified |
| scaffold4249 |
18640 |
18701 |
+ |
(TAGTG)n |
Simple_repeat |
| scaffold4249 |
19130 |
19178 |
+ |
(ATTAAT)n |
Simple_repeat |
| scaffold4249 |
19548 |
19625 |
+ |
(GCT)n |
Simple_repeat |
| scaffold4249 |
20191 |
20229 |
+ |
(TAATTAA)n |
Simple_repeat |
| scaffold4249 |
20440 |
20460 |
+ |
(AAT)n |
Simple_repeat |
| scaffold4249 |
20564 |
20613 |
+ |
(T)n |
Simple_repeat |
| scaffold4249 |
20614 |
20664 |
+ |
(TTTTAT)n |
Simple_repeat |
| scaffold4249 |
20779 |
20800 |
+ |
(T)n |
Simple_repeat |
| scaffold4249 |
24598 |
24626 |
+ |
(CCA)n |
Simple_repeat |
| scaffold4249 |
25386 |
25454 |
+ |
(ATTT)n |
Simple_repeat |
| scaffold4249 |
25828 |
25859 |
+ |
A-rich |
Low_complexity |
| scaffold4249 |
26043 |
26753 |
+ |
RS6446 |
Unspecified |
| scaffold4249 |
26783 |
26929 |
+ |
RS11397 |
Unspecified |
| scaffold4249 |
27969 |
28073 |
+ |
RS11694 |
Unspecified |
| scaffold4249 |
28223 |
28327 |
+ |
RS8426 |
Unspecified |
| scaffold4249 |
29063 |
29091 |
+ |
(T)n |
Simple_repeat |
| scaffold4249 |
29410 |
29460 |
+ |
(ATTTGT)n |
Simple_repeat |
| scaffold4249 |
29435 |
29484 |
+ |
(TATTTTT)n |
Simple_repeat |
| scaffold4249 |
29916 |
29991 |
+ |
RS566 |
Unspecified |
| scaffold4249 |
30121 |
30831 |
+ |
RS6446 |
Unspecified |
| scaffold4249 |
30870 |
30933 |
+ |
RS11397 |
Unspecified |
| scaffold4249 |
31872 |
31978 |
+ |
RS11694 |
Unspecified |
| scaffold4249 |
31994 |
32098 |
+ |
RS8426 |
Unspecified |
| scaffold4249 |
33359 |
33600 |
+ |
RS13098 |
Unspecified |
| scaffold4249 |
34527 |
34667 |
+ |
RS12265 |
Unspecified |
| scaffold4249 |
34725 |
34912 |
+ |
RS12860 |
Unspecified |
| scaffold4249 |
39110 |
39194 |
+ |
(TGG)n |
Simple_repeat |
| scaffold4249 |
39324 |
39885 |
+ |
PL301 |
Unspecified |
| scaffold4249 |
40267 |
40404 |
+ |
RS549 |
Unspecified |
| scaffold4249 |
40267 |
40375 |
- |
RS7290 |
Unspecified |
| scaffold4249 |
40915 |
41025 |
+ |
RS8727 |
Unspecified |
| scaffold4249 |
41196 |
41306 |
+ |
RS14106 |
Unspecified |
| scaffold4249 |
41309 |
41496 |
- |
RS524 |
Unspecified |
| scaffold4249 |
41813 |
41847 |
+ |
(T)n |
Simple_repeat |
| scaffold4249 |
42302 |
42412 |
+ |
RS8727 |
Unspecified |
| scaffold4249 |
42583 |
42744 |
+ |
RS14106 |
Unspecified |
| scaffold4249 |
42877 |
43293 |
- |
RS12241 |
Unspecified |
| scaffold4249 |
44920 |
44937 |
+ |
(T)n |
Simple_repeat |
| scaffold4249 |
45194 |
45211 |
+ |
(A)n |
Simple_repeat |
| scaffold4249 |
45353 |
45372 |
+ |
(T)n |
Simple_repeat |
| scaffold4249 |
45692 |
45874 |
- |
RS5278 |
Unspecified |
| scaffold4249 |
47582 |
48279 |
+ |
RS1085 |
Unspecified |
| scaffold4249 |
48407 |
48454 |
+ |
A-rich |
Low_complexity |
| scaffold4249 |
49245 |
49448 |
- |
PL595 |
Unspecified |
| scaffold4249 |
49430 |
49488 |
- |
RS977 |
Unspecified |
| scaffold4249 |
49820 |
49846 |
+ |
(TATTT)n |
Simple_repeat |
| scaffold4249 |
49863 |
49922 |
+ |
RS18012 |
Unspecified |
| scaffold4249 |
49917 |
50012 |
+ |
RS257 |
Unspecified |
| scaffold4249 |
50080 |
50779 |
+ |
RS1085 |
Unspecified |
| scaffold4249 |
50912 |
50970 |
+ |
A-rich |
Low_complexity |
| scaffold4249 |
52060 |
52323 |
+ |
RS78 |
Unspecified |
| scaffold4249 |
53523 |
54592 |
+ |
L1-1_PTr |
LINE/L1 |
| scaffold4249 |
56017 |
56056 |
+ |
(A)n |
Simple_repeat |
| scaffold4249 |
56276 |
56344 |
+ |
(CCA)n |
Simple_repeat |
| scaffold4249 |
56644 |
56807 |
+ |
RS14106 |
Unspecified |
| scaffold4249 |
56940 |
57356 |
- |
RS12241 |
Unspecified |
| scaffold4249 |
59092 |
59138 |
+ |
A-rich |
Low_complexity |
| scaffold4249 |
59543 |
59598 |
+ |
(AACAA)n |
Simple_repeat |