scaffold43414 Repeat List
| genome |
start |
end |
strand |
repeat-name |
repeat-class |
| scaffold43414 |
1 |
211 |
+ |
PL2 |
Unspecified |
| scaffold43414 |
11 |
590 |
- |
Copia25-PTR_I-int |
LTR/Copia |
| scaffold43414 |
157 |
220 |
+ |
RS15102 |
Unspecified |
| scaffold43414 |
238 |
532 |
- |
RS518 |
Unspecified |
| scaffold43414 |
643 |
789 |
- |
RS2820 |
Unspecified |
| scaffold43414 |
904 |
969 |
- |
RS5812 |
Unspecified |
| scaffold43414 |
1000 |
1005 |
+ |
(TGGCGG)n |
Simple_repeat |
| scaffold43414 |
1006 |
1032 |
+ |
(TGG)n |
Simple_repeat |
| scaffold43414 |
1077 |
1108 |
+ |
(GTGTG)n |
Simple_repeat |
| scaffold43414 |
1153 |
1332 |
+ |
RS5 |
Unspecified |
| scaffold43414 |
1301 |
1344 |
+ |
RS18032 |
Unspecified |
| scaffold43414 |
1446 |
1755 |
+ |
RS96 |
Unspecified |
| scaffold43414 |
2016 |
2034 |
+ |
(AT)n |
Simple_repeat |
| scaffold43414 |
2337 |
2381 |
+ |
(TA)n |
Simple_repeat |
| scaffold43414 |
2752 |
2818 |
- |
PL856 |
Unspecified |
| scaffold43414 |
2760 |
3214 |
+ |
PL773 |
Unspecified |
| scaffold43414 |
4143 |
4696 |
+ |
RS72 |
Unspecified |
| scaffold43414 |
5425 |
5456 |
+ |
(TCA)n |
Simple_repeat |
| scaffold43414 |
5893 |
6067 |
- |
RS1746 |
Unspecified |
| scaffold43414 |
6605 |
6823 |
+ |
RS18188 |
Unspecified |
| scaffold43414 |
7103 |
7247 |
+ |
RS15123 |
Unspecified |
| scaffold43414 |
7259 |
7395 |
+ |
RS18059 |
Unspecified |
| scaffold43414 |
7613 |
7735 |
+ |
RS16721 |
Unspecified |
| scaffold43414 |
7739 |
7854 |
+ |
RS18225 |
Unspecified |
| scaffold43414 |
8046 |
8080 |
+ |
(AATTTGT)n |
Simple_repeat |
| scaffold43414 |
8203 |
8302 |
+ |
RS18132 |
Unspecified |
| scaffold43414 |
9263 |
9375 |
+ |
RS16548 |
Unspecified |
| scaffold43414 |
10299 |
10409 |
- |
RS9719 |
Unspecified |
| scaffold43414 |
11332 |
11724 |
+ |
RS15929 |
Unspecified |
| scaffold43414 |
11802 |
11955 |
+ |
RS16886 |
Unspecified |
| scaffold43414 |
12486 |
12555 |
+ |
A-rich |
Low_complexity |
| scaffold43414 |
12615 |
12762 |
+ |
RS9027 |
Unspecified |
| scaffold43414 |
14423 |
14470 |
+ |
A-rich |
Low_complexity |
| scaffold43414 |
14544 |
14691 |
+ |
RS9027 |
Unspecified |
| scaffold43414 |
14755 |
15007 |
+ |
RS7532 |
Unspecified |
| scaffold43414 |
15023 |
15415 |
+ |
RS15929 |
Unspecified |
| scaffold43414 |
15493 |
15646 |
+ |
RS16886 |
Unspecified |
| scaffold43414 |
16187 |
16234 |
+ |
A-rich |
Low_complexity |
| scaffold43414 |
16307 |
16342 |
+ |
(A)n |
Simple_repeat |
| scaffold43414 |
16568 |
16823 |
+ |
RS7532 |
Unspecified |
| scaffold43414 |
16989 |
17010 |
+ |
(A)n |
Simple_repeat |
| scaffold43414 |
17144 |
17179 |
+ |
(ACTTTTT)n |
Simple_repeat |
| scaffold43414 |
17180 |
17197 |
+ |
(ACTTTT)n |
Simple_repeat |
| scaffold43414 |
20080 |
20115 |
+ |
(A)n |
Simple_repeat |
| scaffold43414 |
21632 |
21693 |
+ |
(AATT)n |
Simple_repeat |
| scaffold43414 |
21743 |
21790 |
+ |
(TGAAGA)n |
Simple_repeat |
| scaffold43414 |
21887 |
22115 |
+ |
RS4 |
Unspecified |
| scaffold43414 |
22216 |
22246 |
+ |
(TTAATT)n |
Simple_repeat |
| scaffold43414 |
22572 |
22595 |
+ |
(ATTT)n |
Simple_repeat |
| scaffold43414 |
22751 |
22784 |
+ |
(T)n |
Simple_repeat |
| scaffold43414 |
24670 |
24769 |
+ |
(TTG)n |
Simple_repeat |
| scaffold43414 |
26767 |
26999 |
+ |
RS17367 |
Unspecified |
| scaffold43414 |
27382 |
27434 |
+ |
A-rich |
Low_complexity |
| scaffold43414 |
28128 |
28160 |
- |
RS3751 |
Unspecified |
| scaffold43414 |
30177 |
30202 |
+ |
(TTAGGG)n |
Simple_repeat |
| scaffold43414 |
30726 |
30779 |
+ |
A-rich |
Low_complexity |
| scaffold43414 |
30956 |
31123 |
+ |
PL509 |
Unspecified |
| scaffold43414 |
31118 |
31194 |
- |
RS1221 |
Unspecified |
| scaffold43414 |
31119 |
31182 |
- |
RS3849 |
Unspecified |
| scaffold43414 |
31268 |
31518 |
+ |
RS7121 |
Unspecified |
| scaffold43414 |
31401 |
31671 |
+ |
RS8117 |
Unspecified |
| scaffold43414 |
31677 |
31712 |
+ |
Gypsy-74_PTr-I |
LTR/Gypsy |
| scaffold43414 |
31713 |
32309 |
+ |
PL509 |
Unspecified |
| scaffold43414 |
32524 |
32542 |
+ |
(A)n |
Simple_repeat |
| scaffold43414 |
38209 |
38300 |
- |
RS1125 |
Unspecified |
| scaffold43414 |
38331 |
38365 |
+ |
A-rich |
Low_complexity |
| scaffold43414 |
38516 |
38537 |
+ |
(GAT)n |
Simple_repeat |
| scaffold43414 |
38538 |
38568 |
+ |
(GAA)n |
Simple_repeat |
| scaffold43414 |
38779 |
39762 |
- |
RS57 |
Unspecified |
| scaffold43414 |
40658 |
40699 |
+ |
(TTATTT)n |
Simple_repeat |
| scaffold43414 |
40941 |
41007 |
+ |
Gypsy-13_TA-I |
LTR/Gypsy |
| scaffold43414 |
41679 |
41792 |
+ |
(AAC)n |
Simple_repeat |
| scaffold43414 |
42077 |
42217 |
- |
RS12246 |
Unspecified |
| scaffold43414 |
42099 |
42246 |
+ |
RS1357 |
Unspecified |
| scaffold43414 |
42339 |
42433 |
+ |
RS8515 |
Unspecified |
| scaffold43414 |
42353 |
42433 |
+ |
RS2848 |
Unspecified |
| scaffold43414 |
42499 |
42703 |
+ |
RS13807 |
Unspecified |
| scaffold43414 |
42582 |
42968 |
- |
RS2963 |
Unspecified |
| scaffold43414 |
44538 |
45095 |
- |
RS14 |
Unspecified |
| scaffold43414 |
45163 |
45209 |
+ |
(TTATA)n |
Simple_repeat |
| scaffold43414 |
46901 |
46933 |
+ |
(ATT)n |
Simple_repeat |
| scaffold43414 |
47340 |
47366 |
+ |
(CCATT)n |
Simple_repeat |
| scaffold43414 |
47492 |
47846 |
- |
PL2 |
Unspecified |
| scaffold43414 |
47882 |
47898 |
+ |
(T)n |
Simple_repeat |
| scaffold43414 |
49272 |
49336 |
+ |
(TAATT)n |
Simple_repeat |
| scaffold43414 |
49336 |
49619 |
+ |
RS1746 |
Unspecified |
| scaffold43414 |
49401 |
49669 |
- |
RS1746 |
Unspecified |
| scaffold43414 |
49938 |
50333 |
+ |
PL436 |
Unspecified |
| scaffold43414 |
50631 |
50751 |
+ |
RS93 |
Unspecified |
| scaffold43414 |
51486 |
51502 |
+ |
(T)n |
Simple_repeat |
| scaffold43414 |
52244 |
52335 |
- |
RS1200 |
Unspecified |
| scaffold43414 |
52244 |
52357 |
- |
PL208 |
Unspecified |
| scaffold43414 |
52378 |
52495 |
+ |
(ATATGA)n |
Simple_repeat |
| scaffold43414 |
52540 |
52613 |
+ |
A-rich |
Low_complexity |
| scaffold43414 |
52807 |
52953 |
+ |
(TTTA)n |
Simple_repeat |
| scaffold43414 |
52807 |
52859 |
+ |
(TTTA)n |
Simple_repeat |
| scaffold43414 |
52850 |
52953 |
+ |
PL468 |
Unspecified |
| scaffold43414 |
52881 |
52959 |
+ |
PL169 |
Unspecified |
| scaffold43414 |
52964 |
53025 |
+ |
(ATTTAAG)n |
Simple_repeat |
| scaffold43414 |
53257 |
53317 |
- |
PIGY-I_PS |
LTR/Gypsy |
| scaffold43414 |
53452 |
53471 |
+ |
(AG)n |
Simple_repeat |
| scaffold43414 |
53532 |
53557 |
+ |
(AACCCT)n |
Simple_repeat |
| scaffold43414 |
53669 |
53711 |
+ |
(T)n |
Simple_repeat |
| scaffold43414 |
55273 |
55312 |
+ |
(ATATTT)n |
Simple_repeat |
| scaffold43414 |
59735 |
59786 |
+ |
(TGACGAG)n |
Simple_repeat |
| scaffold43414 |
61586 |
61780 |
+ |
RTE1_MT |
LINE/RTE-BovB |
| scaffold43414 |
63097 |
63252 |
- |
RS13085 |
Unspecified |
| scaffold43414 |
64459 |
64632 |
- |
RS179 |
Unspecified |
| scaffold43414 |
66712 |
66751 |
+ |
A-rich |
Low_complexity |
| scaffold43414 |
67624 |
67756 |
+ |
RS14861 |
Unspecified |
| scaffold43414 |
68180 |
69353 |
+ |
RS17204 |
Unspecified |
| scaffold43414 |
69359 |
69644 |
+ |
RS15133 |
Unspecified |
| scaffold43414 |
69652 |
69799 |
+ |
RS17742 |
Unspecified |
| scaffold43414 |
70207 |
70321 |
+ |
RS16051 |
Unspecified |
| scaffold43414 |
70958 |
71065 |
+ |
RS10511 |
Unspecified |
| scaffold43414 |
71324 |
71741 |
+ |
PL3 |
Unspecified |
| scaffold43414 |
73077 |
73110 |
+ |
(T)n |
Simple_repeat |