scaffold44378 Repeat List
| genome |
start |
end |
strand |
repeat-name |
repeat-class |
| scaffold44378 |
434 |
516 |
+ |
(CAAGCA)n |
Simple_repeat |
| scaffold44378 |
470 |
512 |
+ |
GYPSODE1_LTR |
LTR/Gypsy |
| scaffold44378 |
1114 |
1175 |
+ |
A-rich |
Low_complexity |
| scaffold44378 |
1513 |
2509 |
- |
PL333 |
Unspecified |
| scaffold44378 |
6127 |
6231 |
+ |
Ogre-PT1_I-int |
LTR/Gypsy |
| scaffold44378 |
6296 |
7050 |
+ |
RS857 |
Unspecified |
| scaffold44378 |
7048 |
7087 |
- |
RS13226 |
Unspecified |
| scaffold44378 |
7088 |
7130 |
+ |
PSAT19 |
LTR/Gypsy |
| scaffold44378 |
7128 |
7166 |
+ |
RS857 |
Unspecified |
| scaffold44378 |
7168 |
7210 |
+ |
PSAT19 |
LTR/Gypsy |
| scaffold44378 |
7208 |
7281 |
+ |
RS857 |
Unspecified |
| scaffold44378 |
7256 |
7753 |
- |
RS195 |
Unspecified |
| scaffold44378 |
7771 |
8166 |
- |
RS911 |
Unspecified |
| scaffold44378 |
8247 |
8287 |
+ |
(AAGATC)n |
Simple_repeat |
| scaffold44378 |
9166 |
9441 |
- |
RS709 |
Unspecified |
| scaffold44378 |
9206 |
9487 |
- |
RS87 |
Unspecified |
| scaffold44378 |
9274 |
9487 |
- |
RS709 |
Unspecified |
| scaffold44378 |
12392 |
12655 |
- |
PL333 |
Unspecified |
| scaffold44378 |
12655 |
13174 |
+ |
(TGCTGG)n |
Simple_repeat |
| scaffold44378 |
13103 |
13174 |
+ |
(TGCTGG)n |
Simple_repeat |
| scaffold44378 |
13246 |
13516 |
- |
RS1300 |
Unspecified |
| scaffold44378 |
14071 |
14097 |
+ |
(T)n |
Simple_repeat |
| scaffold44378 |
16094 |
16180 |
+ |
(TA)n |
Simple_repeat |
| scaffold44378 |
16631 |
16698 |
+ |
Copia-61_GM-I |
LTR/Copia |
| scaffold44378 |
17087 |
17110 |
+ |
(A)n |
Simple_repeat |
| scaffold44378 |
17139 |
17187 |
+ |
(TTGTAA)n |
Simple_repeat |
| scaffold44378 |
18528 |
18624 |
+ |
Copia-10_BD-I |
LTR/Copia |
| scaffold44378 |
18839 |
20258 |
+ |
Copia-10_BD-I |
LTR/Copia |
| scaffold44378 |
20419 |
21968 |
+ |
Copia-10_BD-I |
LTR/Copia |
| scaffold44378 |
22245 |
23431 |
- |
PL911 |
Unspecified |
| scaffold44378 |
22383 |
23819 |
+ |
RS1460 |
Unspecified |
| scaffold44378 |
26272 |
26490 |
+ |
PIGY-I_PS |
LTR/Gypsy |
| scaffold44378 |
26803 |
27464 |
- |
RS661 |
Unspecified |
| scaffold44378 |
27725 |
28286 |
+ |
PIGY-I_PS |
LTR/Gypsy |
| scaffold44378 |
29579 |
29650 |
+ |
(AACAA)n |
Simple_repeat |
| scaffold44378 |
30192 |
30229 |
+ |
(GATTGCT)n |
Simple_repeat |
| scaffold44378 |
30282 |
30346 |
+ |
Gypsy-9_Mad-I |
LTR/Gypsy |
| scaffold44378 |
31532 |
32193 |
- |
RS661 |
Unspecified |
| scaffold44378 |
32416 |
33015 |
+ |
Gypsy1-PTR_I-int |
LTR/Gypsy |
| scaffold44378 |
34013 |
34077 |
+ |
Gypsy-9_Mad-I |
LTR/Gypsy |
| scaffold44378 |
37033 |
37078 |
+ |
(AAC)n |
Simple_repeat |
| scaffold44378 |
37195 |
37269 |
+ |
Copia-69_GM-LTR |
LTR/Copia |
| scaffold44378 |
37798 |
37837 |
+ |
(AATTAT)n |
Simple_repeat |
| scaffold44378 |
38725 |
38761 |
+ |
A-rich |
Low_complexity |
| scaffold44378 |
40232 |
40253 |
+ |
(GAA)n |
Simple_repeat |
| scaffold44378 |
40672 |
40856 |
+ |
PL886 |
Unspecified |
| scaffold44378 |
40979 |
41431 |
- |
Gypsy18-PTR_I-int |
LTR/Gypsy |
| scaffold44378 |
41627 |
41776 |
+ |
RS2782 |
Unspecified |
| scaffold44378 |
42366 |
42420 |
+ |
(AATCAAT)n |
Simple_repeat |
| scaffold44378 |
42421 |
42461 |
+ |
A-rich |
Low_complexity |
| scaffold44378 |
42542 |
42572 |
+ |
(ATGATA)n |
Simple_repeat |
| scaffold44378 |
42751 |
42935 |
+ |
EnSpm-7_STu |
DNA/CMC-EnSpm |
| scaffold44378 |
42858 |
42935 |
+ |
EnSpm-7_STu |
DNA/CMC-EnSpm |
| scaffold44378 |
42899 |
42959 |
- |
CACTA-P |
DNA/CMC-EnSpm |
| scaffold44378 |
45087 |
45266 |
+ |
RS3070 |
Unspecified |
| scaffold44378 |
45639 |
45797 |
- |
TY1_Copia |
TY1_Copia(TransposonPSI) |
| scaffold44378 |
45964 |
46641 |
- |
CAULIV1 |
LTR/Caulimovirus |
| scaffold44378 |
48027 |
48238 |
- |
Caulimovirus-3_STu |
LTR/Caulimovirus |
| scaffold44378 |
49010 |
49075 |
+ |
(TTG)n |
Simple_repeat |
| scaffold44378 |
49122 |
49335 |
- |
RS4192 |
Unspecified |
| scaffold44378 |
49201 |
49357 |
+ |
RS3692 |
Unspecified |
| scaffold44378 |
49465 |
49496 |
+ |
(T)n |
Simple_repeat |
| scaffold44378 |
49838 |
49884 |
- |
Caulimovirus-1_VVi |
LTR/Caulimovirus |
| scaffold44378 |
50034 |
50080 |
- |
Caulimovirus-1_GM |
LTR/Caulimovirus |
| scaffold44378 |
50318 |
50417 |
- |
Caulimovirus-1_GM |
LTR/Caulimovirus |
| scaffold44378 |
50727 |
50855 |
- |
CAULIV-1_Mad |
LTR/Caulimovirus |
| scaffold44378 |
50852 |
50964 |
- |
RS108 |
Unspecified |
| scaffold44378 |
51830 |
51900 |
+ |
(TGTTG)n |
Simple_repeat |
| scaffold44378 |
52242 |
52328 |
+ |
(TGTTGTT)n |
Simple_repeat |
| scaffold44378 |
52843 |
52897 |
+ |
(TGGATTT)n |
Simple_repeat |
| scaffold44378 |
53373 |
53430 |
- |
Gypsy-10_Pru-LTR |
LTR/Gypsy |
| scaffold44378 |
53641 |
53697 |
- |
Gypsy-10_Pru-LTR |
LTR/Gypsy |
| scaffold44378 |
53858 |
54098 |
+ |
RS12409 |
Unspecified |
| scaffold44378 |
54116 |
54251 |
- |
RS192 |
Unspecified |
| scaffold44378 |
54189 |
54333 |
+ |
RS3113 |
Unspecified |
| scaffold44378 |
54257 |
54393 |
+ |
RS3113 |
Unspecified |
| scaffold44378 |
54301 |
55795 |
- |
RS192 |
Unspecified |
| scaffold44378 |
54396 |
55731 |
- |
RS629 |
Unspecified |
| scaffold44378 |
56069 |
56940 |
- |
RS1421 |
Unspecified |
| scaffold44378 |
58148 |
58910 |
- |
RS1449 |
Unspecified |
| scaffold44378 |
58571 |
59140 |
+ |
RS412 |
Unspecified |