scaffold46115 Repeat List
| genome |
start |
end |
strand |
repeat-name |
repeat-class |
| scaffold46115 |
38 |
58 |
+ |
(TTTTG)n |
Simple_repeat |
| scaffold46115 |
59 |
88 |
+ |
(TTTCGTG)n |
Simple_repeat |
| scaffold46115 |
89 |
100 |
+ |
(TTTTG)n |
Simple_repeat |
| scaffold46115 |
374 |
402 |
+ |
(ATTTA)n |
Simple_repeat |
| scaffold46115 |
538 |
555 |
+ |
(A)n |
Simple_repeat |
| scaffold46115 |
1263 |
1430 |
- |
RS6939 |
Unspecified |
| scaffold46115 |
1616 |
1759 |
+ |
RS1933 |
Unspecified |
| scaffold46115 |
2810 |
2851 |
+ |
(CATTAT)n |
Simple_repeat |
| scaffold46115 |
3120 |
3268 |
+ |
(TCGGG)n |
Simple_repeat |
| scaffold46115 |
4435 |
4579 |
+ |
RS4222 |
Unspecified |
| scaffold46115 |
4550 |
5599 |
- |
PL652 |
Unspecified |
| scaffold46115 |
5588 |
5666 |
+ |
RS4222 |
Unspecified |
| scaffold46115 |
6627 |
7402 |
- |
RS378 |
Unspecified |
| scaffold46115 |
7573 |
7687 |
+ |
Gypsy-34_VV-I |
LTR/Gypsy |
| scaffold46115 |
8177 |
8212 |
+ |
A-rich |
Low_complexity |
| scaffold46115 |
8717 |
8826 |
- |
Gypsy-29_PTr-LTR |
LTR/Gypsy |
| scaffold46115 |
9427 |
9519 |
- |
RS10722 |
Unspecified |
| scaffold46115 |
9532 |
9654 |
- |
RS10722 |
Unspecified |
| scaffold46115 |
9602 |
9761 |
+ |
RS3682 |
Unspecified |
| scaffold46115 |
9689 |
9849 |
+ |
RS3682 |
Unspecified |
| scaffold46115 |
9777 |
9944 |
+ |
RS3682 |
Unspecified |
| scaffold46115 |
9884 |
10008 |
- |
RS10722 |
Unspecified |
| scaffold46115 |
9963 |
10129 |
+ |
RS3682 |
Unspecified |
| scaffold46115 |
10047 |
10229 |
+ |
RS3682 |
Unspecified |
| scaffold46115 |
10135 |
10430 |
+ |
RS3682 |
Unspecified |
| scaffold46115 |
10614 |
11130 |
- |
RS1047 |
Unspecified |
| scaffold46115 |
11218 |
11234 |
+ |
(A)n |
Simple_repeat |
| scaffold46115 |
11465 |
11620 |
- |
RS3322 |
Unspecified |
| scaffold46115 |
12059 |
12090 |
+ |
(TTTAGT)n |
Simple_repeat |
| scaffold46115 |
12168 |
12258 |
+ |
(TTTA)n |
Simple_repeat |
| scaffold46115 |
13418 |
13441 |
+ |
(T)n |
Simple_repeat |
| scaffold46115 |
14594 |
14628 |
+ |
(TATTTT)n |
Simple_repeat |
| scaffold46115 |
14884 |
14918 |
+ |
(TTTA)n |
Simple_repeat |
| scaffold46115 |
14958 |
15025 |
+ |
A-rich |
Low_complexity |
| scaffold46115 |
15157 |
15355 |
- |
RS2452 |
Unspecified |
| scaffold46115 |
15843 |
15888 |
+ |
(TATATT)n |
Simple_repeat |
| scaffold46115 |
15928 |
15957 |
+ |
(T)n |
Simple_repeat |
| scaffold46115 |
16722 |
16747 |
+ |
(ATAA)n |
Simple_repeat |
| scaffold46115 |
16907 |
16940 |
+ |
(A)n |
Simple_repeat |
| scaffold46115 |
17016 |
17042 |
+ |
(A)n |
Simple_repeat |
| scaffold46115 |
18613 |
18722 |
- |
Gypsy-29_PTr-LTR |
LTR/Gypsy |
| scaffold46115 |
19129 |
19391 |
+ |
Gypsy-34_VV-I |
LTR/Gypsy |
| scaffold46115 |
19129 |
19562 |
+ |
Gypsy-34_VV-I |
LTR/Gypsy |
| scaffold46115 |
19326 |
19562 |
- |
RS10398 |
Unspecified |
| scaffold46115 |
20310 |
20420 |
+ |
Gypsy-34_VV-I |
LTR/Gypsy |
| scaffold46115 |
22388 |
22812 |
- |
Caulimovirus-1_VVi |
LTR/Caulimovirus |
| scaffold46115 |
23130 |
24450 |
- |
Caulimovirus-1_VVi |
LTR/Caulimovirus |
| scaffold46115 |
24466 |
24500 |
+ |
(T)n |
Simple_repeat |
| scaffold46115 |
25012 |
25148 |
+ |
Caulimovirus-1_GM |
LTR/Caulimovirus |
| scaffold46115 |
26501 |
26642 |
+ |
CAULIV-1B_Mad |
LTR/Caulimovirus |
| scaffold46115 |
26670 |
26825 |
- |
CAULIV-1B_Mad |
LTR/Caulimovirus |
| scaffold46115 |
28199 |
28410 |
- |
Caulimovirus-1_GM |
LTR/Caulimovirus |
| scaffold46115 |
28826 |
28848 |
+ |
(A)n |
Simple_repeat |
| scaffold46115 |
28864 |
29861 |
+ |
Caulimovirus-1_VVi |
LTR/Caulimovirus |
| scaffold46115 |
29860 |
30113 |
+ |
Caulimovirus-3_STu |
LTR/Caulimovirus |
| scaffold46115 |
30428 |
30852 |
+ |
Caulimovirus-1_VVi |
LTR/Caulimovirus |
| scaffold46115 |
30975 |
31043 |
+ |
Caulimovirus-1_VVi |
LTR/Caulimovirus |
| scaffold46115 |
31973 |
32043 |
- |
RS5020 |
Unspecified |
| scaffold46115 |
32188 |
32207 |
+ |
(T)n |
Simple_repeat |
| scaffold46115 |
33513 |
33600 |
- |
Copia-28_Pru-I |
LTR/Copia |
| scaffold46115 |
33698 |
33737 |
+ |
A-rich |
Low_complexity |
| scaffold46115 |
33775 |
33993 |
+ |
RS7231 |
Unspecified |
| scaffold46115 |
34334 |
34368 |
+ |
(TCATCT)n |
Simple_repeat |
| scaffold46115 |
34672 |
34891 |
- |
hAT-12_VVi |
DNA/hAT-Tag1 |
| scaffold46115 |
35239 |
35291 |
+ |
(AATAATT)n |
Simple_repeat |
| scaffold46115 |
35297 |
35523 |
- |
hAT-10_VV |
DNA/hAT-Tag1 |
| scaffold46115 |
35624 |
36160 |
- |
VIHAT2 |
DNA/hAT-Tag1 |
| scaffold46115 |
36686 |
37173 |
+ |
VIHAT2 |
DNA/hAT-Tag1 |
| scaffold46115 |
37324 |
37549 |
+ |
hAT-10_VV |
DNA/hAT-Tag1 |
| scaffold46115 |
37558 |
37613 |
+ |
(TTA)n |
Simple_repeat |
| scaffold46115 |
37760 |
37792 |
+ |
(TAA)n |
Simple_repeat |
| scaffold46115 |
37999 |
38193 |
+ |
hAT-12_VVi |
DNA/hAT-Tag1 |
| scaffold46115 |
38524 |
38576 |
+ |
(GGT)n |
Simple_repeat |
| scaffold46115 |
38879 |
39096 |
- |
RS7231 |
Unspecified |
| scaffold46115 |
39089 |
39322 |
+ |
RS5020 |
Unspecified |
| scaffold46115 |
39404 |
39523 |
+ |
hAT-17_ZM |
DNA/hAT-Ac |
| scaffold46115 |
40121 |
40171 |
+ |
(TAATT)n |
Simple_repeat |
| scaffold46115 |
40217 |
40249 |
+ |
(T)n |
Simple_repeat |
| scaffold46115 |
41247 |
41484 |
- |
PL582 |
Unspecified |
| scaffold46115 |
41460 |
41492 |
- |
PL773 |
Unspecified |
| scaffold46115 |
41666 |
41858 |
+ |
(CTGAA)n |
Simple_repeat |
| scaffold46115 |
43018 |
43060 |
+ |
A-rich |
Low_complexity |
| scaffold46115 |
43174 |
43192 |
+ |
(T)n |
Simple_repeat |
| scaffold46115 |
43352 |
43381 |
+ |
(ATGG)n |
Simple_repeat |
| scaffold46115 |
43819 |
43927 |
- |
PL53 |
Unspecified |
| scaffold46115 |
43838 |
44370 |
- |
PL268 |
Unspecified |
| scaffold46115 |
44265 |
44388 |
+ |
PL268 |
Unspecified |
| scaffold46115 |
44839 |
44991 |
- |
RS5312 |
Unspecified |
| scaffold46115 |
45408 |
45739 |
- |
RS1150 |
Unspecified |
| scaffold46115 |
45418 |
45885 |
+ |
PL942 |
Unspecified |
| scaffold46115 |
45886 |
46072 |
- |
Copia-86_VV-I |
LTR/Copia |
| scaffold46115 |
46316 |
46352 |
+ |
(TTTTAT)n |
Simple_repeat |
| scaffold46115 |
46479 |
46667 |
+ |
RS4222 |
Unspecified |
| scaffold46115 |
47223 |
47300 |
+ |
PL256 |
Unspecified |
| scaffold46115 |
47235 |
47300 |
- |
PL607 |
Unspecified |
| scaffold46115 |
47686 |
47717 |
+ |
(TTATT)n |
Simple_repeat |
| scaffold46115 |
48657 |
48804 |
+ |
(CAGCT)n |
Simple_repeat |
| scaffold46115 |
49513 |
49594 |
+ |
(TAT)n |
Simple_repeat |
| scaffold46115 |
49636 |
49742 |
+ |
(CAGCT)n |
Simple_repeat |
| scaffold46115 |
50488 |
50900 |
+ |
PL774 |
Unspecified |
| scaffold46115 |
51363 |
51478 |
+ |
Copia-66_GM-LTR |
LTR/Copia |
| scaffold46115 |
51495 |
51561 |
+ |
(ATT)n |
Simple_repeat |
| scaffold46115 |
52132 |
52224 |
+ |
(TATTTTA)n |
Simple_repeat |
| scaffold46115 |
52410 |
52481 |
+ |
Copia4-PTR_I-int |
LTR/Copia |
| scaffold46115 |
52634 |
52726 |
+ |
Copia-66_GM-I |
LTR/Copia |
| scaffold46115 |
52809 |
54920 |
+ |
Copia-66_GM-I |
LTR/Copia |
| scaffold46115 |
54901 |
55842 |
+ |
Copia-66_GM-I |
LTR/Copia |
| scaffold46115 |
55848 |
56117 |
+ |
Copia-66_GM-I |
LTR/Copia |
| scaffold46115 |
56266 |
56356 |
+ |
A-rich |
Low_complexity |
| scaffold46115 |
56499 |
56540 |
+ |
(GTAA)n |
Simple_repeat |
| scaffold46115 |
56575 |
56656 |
+ |
(GGT)n |
Simple_repeat |
| scaffold46115 |
57292 |
57338 |
+ |
(ATGACA)n |
Simple_repeat |
| scaffold46115 |
57432 |
57564 |
+ |
PL572 |
Unspecified |
| scaffold46115 |
57477 |
57625 |
- |
RS767 |
Unspecified |
| scaffold46115 |
57638 |
57759 |
+ |
(TCGGG)n |
Simple_repeat |
| scaffold46115 |
59614 |
59640 |
+ |
(TTTA)n |
Simple_repeat |
| scaffold46115 |
59657 |
59864 |
+ |
RS2452 |
Unspecified |
| scaffold46115 |
59864 |
60005 |
- |
RS873 |
Unspecified |
| scaffold46115 |
61139 |
61529 |
+ |
RS4957 |
Unspecified |
| scaffold46115 |
61557 |
61586 |
+ |
A-rich |
Low_complexity |
| scaffold46115 |
62498 |
62541 |
+ |
(AGA)n |
Simple_repeat |
| scaffold46115 |
62576 |
63651 |
+ |
Gypsy-46_Mad-I |
LTR/Gypsy |
| scaffold46115 |
63842 |
63864 |
+ |
(GAT)n |
Simple_repeat |
| scaffold46115 |
64003 |
64203 |
+ |
Gypsy-46_Mad-I |
LTR/Gypsy |
| scaffold46115 |
65436 |
68927 |
+ |
Gypsy-46_Mad-I |
LTR/Gypsy |
| scaffold46115 |
65568 |
68927 |
+ |
Gypsy-46_Mad-I |
LTR/Gypsy |
| scaffold46115 |
69065 |
69119 |
+ |
Gypsy-46_Mad-I |
LTR/Gypsy |
| scaffold46115 |
69131 |
69170 |
+ |
Gypsy-46_Mad-I |
LTR/Gypsy |
| scaffold46115 |
71178 |
71992 |
+ |
Gypsy-34_VV-I |
LTR/Gypsy |
| scaffold46115 |
73641 |
73671 |
+ |
(TTAA)n |
Simple_repeat |
| scaffold46115 |
74226 |
74366 |
+ |
RS18394 |
Unspecified |
| scaffold46115 |
74542 |
74602 |
+ |
A-rich |
Low_complexity |
| scaffold46115 |
74979 |
75005 |
+ |
(A)n |
Simple_repeat |
| scaffold46115 |
75418 |
75437 |
+ |
(A)n |
Simple_repeat |
| scaffold46115 |
76102 |
76155 |
+ |
(GGTCC)n |
Simple_repeat |
| scaffold46115 |
76319 |
76801 |
+ |
RS4957 |
Unspecified |
| scaffold46115 |
76824 |
77162 |
+ |
RS585 |
Unspecified |
| scaffold46115 |
77217 |
77607 |
+ |
RS1279 |
Unspecified |
| scaffold46115 |
78352 |
78375 |
+ |
(A)n |
Simple_repeat |
| scaffold46115 |
78376 |
78404 |
+ |
A-rich |
Low_complexity |
| scaffold46115 |
79392 |
79433 |
+ |
(TA)n |
Simple_repeat |
| scaffold46115 |
79592 |
79687 |
- |
RS16382 |
Unspecified |
| scaffold46115 |
79789 |
79808 |
+ |
(A)n |
Simple_repeat |
| scaffold46115 |
80322 |
81186 |
+ |
RS294 |
Unspecified |
| scaffold46115 |
80467 |
81965 |
- |
RS355 |
Unspecified |
| scaffold46115 |
82768 |
82807 |
+ |
(ATGATA)n |
Simple_repeat |
| scaffold46115 |
84497 |
84583 |
- |
LTR-7_Mad-LTR |
LTR |
| scaffold46115 |
85077 |
85319 |
+ |
RS4 |
Unspecified |
| scaffold46115 |
85355 |
85402 |
+ |
(TAT)n |
Simple_repeat |
| scaffold46115 |
86983 |
87030 |
+ |
(TGG)n |
Simple_repeat |
| scaffold46115 |
90199 |
90420 |
- |
RS586 |
Unspecified |
| scaffold46115 |
90483 |
90507 |
+ |
(AATAA)n |
Simple_repeat |
| scaffold46115 |
91459 |
91547 |
+ |
PL635 |
Unspecified |
| scaffold46115 |
92071 |
92165 |
+ |
(TTCAG)n |
Simple_repeat |
| scaffold46115 |
92565 |
92604 |
+ |
(AATTAAT)n |
Simple_repeat |
| scaffold46115 |
93020 |
93283 |
- |
RS586 |
Unspecified |
| scaffold46115 |
93620 |
93654 |
+ |
A-rich |
Low_complexity |
| scaffold46115 |
95980 |
96309 |
- |
RS1436 |
Unspecified |
| scaffold46115 |
96567 |
96749 |
+ |
(TCGGG)n |
Simple_repeat |
| scaffold46115 |
96852 |
97104 |
+ |
RS1 |
Unspecified |
| scaffold46115 |
97147 |
97324 |
+ |
(TCGGG)n |
Simple_repeat |
| scaffold46115 |
98907 |
98953 |
+ |
A-rich |
Low_complexity |
| scaffold46115 |
99863 |
100154 |
- |
RS518 |
Unspecified |
| scaffold46115 |
100535 |
101059 |
+ |
PL831 |
Unspecified |
| scaffold46115 |
101731 |
101932 |
- |
RS1829 |
Unspecified |
| scaffold46115 |
101938 |
101971 |
- |
RS1829 |
Unspecified |
| scaffold46115 |
102595 |
102851 |
- |
RS47 |
Unspecified |
| scaffold46115 |
102915 |
103030 |
- |
RS250 |
Unspecified |
| scaffold46115 |
105355 |
106184 |
- |
LINE1-24_SBi |
LINE/L1 |
| scaffold46115 |
106703 |
106796 |
+ |
(TAA)n |
Simple_repeat |
| scaffold46115 |
106809 |
106847 |
+ |
A-rich |
Low_complexity |