scaffold46180 Repeat List
| genome |
start |
end |
strand |
repeat-name |
repeat-class |
| scaffold46180 |
18 |
123 |
+ |
(ATG)n |
Simple_repeat |
| scaffold46180 |
262 |
314 |
+ |
(TAA)n |
Simple_repeat |
| scaffold46180 |
340 |
372 |
+ |
(TTG)n |
Simple_repeat |
| scaffold46180 |
344 |
493 |
+ |
(GGT)n |
Simple_repeat |
| scaffold46180 |
501 |
534 |
+ |
GA-rich |
Low_complexity |
| scaffold46180 |
593 |
645 |
- |
PL46 |
Unspecified |
| scaffold46180 |
1084 |
1117 |
+ |
(TTTTC)n |
Simple_repeat |
| scaffold46180 |
1689 |
1737 |
+ |
(TCCCTT)n |
Simple_repeat |
| scaffold46180 |
2830 |
2865 |
+ |
(T)n |
Simple_repeat |
| scaffold46180 |
2996 |
3042 |
+ |
(CATCTT)n |
Simple_repeat |
| scaffold46180 |
3200 |
3262 |
+ |
(TTTTA)n |
Simple_repeat |
| scaffold46180 |
8280 |
8380 |
- |
RS12218 |
Unspecified |
| scaffold46180 |
8306 |
8458 |
- |
RS780 |
Unspecified |
| scaffold46180 |
9563 |
9655 |
+ |
RS3146 |
Unspecified |
| scaffold46180 |
9659 |
10110 |
- |
PL565 |
Unspecified |
| scaffold46180 |
10890 |
11001 |
- |
RS16911 |
Unspecified |
| scaffold46180 |
11282 |
11353 |
+ |
(CATA)n |
Simple_repeat |
| scaffold46180 |
12395 |
12488 |
- |
RS16382 |
Unspecified |
| scaffold46180 |
12395 |
12503 |
+ |
RS4475 |
Unspecified |
| scaffold46180 |
14017 |
14163 |
+ |
RS16656 |
Unspecified |
| scaffold46180 |
14376 |
14574 |
+ |
RS4 |
Unspecified |
| scaffold46180 |
14596 |
14633 |
+ |
A-rich |
Low_complexity |
| scaffold46180 |
15456 |
15464 |
+ |
(CTCTCTA)n |
Simple_repeat |
| scaffold46180 |
15465 |
15501 |
+ |
(CTCTA)n |
Simple_repeat |
| scaffold46180 |
15502 |
15511 |
+ |
(CTCTCTA)n |
Simple_repeat |
| scaffold46180 |
15984 |
16104 |
+ |
RS5629 |
Unspecified |
| scaffold46180 |
16433 |
16511 |
- |
RS549 |
Unspecified |
| scaffold46180 |
16512 |
16555 |
+ |
A-rich |
Low_complexity |
| scaffold46180 |
17378 |
17507 |
- |
hAT-N16_ZM |
DNA/hAT-Ac |
| scaffold46180 |
17542 |
19731 |
- |
TY1_Copia |
TY1_Copia(TransposonPSI) |
| scaffold46180 |
17543 |
17852 |
- |
Copia-32-I_VV |
LTR/Copia |
| scaffold46180 |
18081 |
19398 |
- |
Copia-32-I_VV |
LTR/Copia |
| scaffold46180 |
20001 |
20079 |
- |
Copia-32-I_VV |
LTR/Copia |
| scaffold46180 |
20234 |
20398 |
- |
Copia-32-I_VV |
LTR/Copia |
| scaffold46180 |
20582 |
20707 |
+ |
RS5629 |
Unspecified |
| scaffold46180 |
21833 |
21864 |
+ |
(TAT)n |
Simple_repeat |
| scaffold46180 |
22702 |
22760 |
+ |
GA-rich |
Low_complexity |
| scaffold46180 |
23328 |
23480 |
+ |
(GGTCCG)n |
Simple_repeat |
| scaffold46180 |
23625 |
23697 |
+ |
RS5996 |
Unspecified |
| scaffold46180 |
24403 |
24584 |
- |
RS178 |
Unspecified |
| scaffold46180 |
26718 |
26749 |
+ |
(AATAA)n |
Simple_repeat |
| scaffold46180 |
27234 |
27459 |
- |
RS10 |
Unspecified |
| scaffold46180 |
27564 |
27592 |
+ |
(T)n |
Simple_repeat |
| scaffold46180 |
27896 |
27950 |
- |
RS10 |
Unspecified |
| scaffold46180 |
27942 |
28056 |
- |
RS16836 |
Unspecified |
| scaffold46180 |
27948 |
28046 |
- |
RS16382 |
Unspecified |
| scaffold46180 |
28132 |
28192 |
+ |
(T)n |
Simple_repeat |
| scaffold46180 |
28275 |
28317 |
+ |
RS14970 |
Unspecified |
| scaffold46180 |
28318 |
28436 |
+ |
(T)n |
Simple_repeat |
| scaffold46180 |
28374 |
28436 |
+ |
(T)n |
Simple_repeat |
| scaffold46180 |
28512 |
28605 |
- |
RS18358 |
Unspecified |
| scaffold46180 |
28603 |
28739 |
- |
RS10209 |
Unspecified |
| scaffold46180 |
28693 |
28841 |
- |
RS6373 |
Unspecified |
| scaffold46180 |
29723 |
29914 |
- |
RS6723 |
Unspecified |
| scaffold46180 |
30576 |
30694 |
+ |
RS5264 |
Unspecified |
| scaffold46180 |
30786 |
31041 |
+ |
RS9547 |
Unspecified |
| scaffold46180 |
31456 |
31466 |
+ |
(TTTTA)n |
Simple_repeat |
| scaffold46180 |
31467 |
31506 |
+ |
(TATTTT)n |
Simple_repeat |
| scaffold46180 |
31713 |
32313 |
+ |
RS2808 |
Unspecified |
| scaffold46180 |
32653 |
32698 |
- |
RS10267 |
Unspecified |
| scaffold46180 |
32693 |
32771 |
- |
RS3056 |
Unspecified |
| scaffold46180 |
33033 |
33383 |
+ |
RS6780 |
Unspecified |
| scaffold46180 |
33410 |
33643 |
+ |
RS11637 |
Unspecified |
| scaffold46180 |
33814 |
33846 |
+ |
(TATAGA)n |
Simple_repeat |
| scaffold46180 |
34220 |
34253 |
+ |
(ATGA)n |
Simple_repeat |
| scaffold46180 |
34460 |
34485 |
+ |
(ATGA)n |
Simple_repeat |
| scaffold46180 |
34668 |
34699 |
+ |
(TTAA)n |
Simple_repeat |
| scaffold46180 |
35034 |
35125 |
+ |
RS15175 |
Unspecified |
| scaffold46180 |
35596 |
35651 |
+ |
(TATCA)n |
Simple_repeat |
| scaffold46180 |
36100 |
36128 |
+ |
(ATTTAA)n |
Simple_repeat |
| scaffold46180 |
36878 |
36924 |
+ |
A-rich |
Low_complexity |
| scaffold46180 |
38114 |
38170 |
+ |
(CTT)n |
Simple_repeat |
| scaffold46180 |
38427 |
38488 |
+ |
(TTTT)n |
Simple_repeat |
| scaffold46180 |
42650 |
42669 |
+ |
(T)n |
Simple_repeat |
| scaffold46180 |
42925 |
42951 |
+ |
(TTCAG)n |
Simple_repeat |
| scaffold46180 |
44132 |
44291 |
- |
RS2719 |
Unspecified |
| scaffold46180 |
44138 |
44310 |
+ |
RS233 |
Unspecified |
| scaffold46180 |
44246 |
44321 |
- |
RS16941 |
Unspecified |
| scaffold46180 |
51376 |
51494 |
- |
HAT-N8_Mad |
DNA/hAT-Tag1 |
| scaffold46180 |
51687 |
51705 |
+ |
(T)n |
Simple_repeat |
| scaffold46180 |
51743 |
51764 |
+ |
(T)n |
Simple_repeat |
| scaffold46180 |
51858 |
51965 |
- |
hAT-9_SBi |
DNA/hAT-Tag1 |
| scaffold46180 |
52266 |
52359 |
+ |
RS4475 |
Unspecified |
| scaffold46180 |
52383 |
52429 |
+ |
(TTCAGTTTAG)n |
Simple_repeat |
| scaffold46180 |
52457 |
52580 |
+ |
(TTCAG)n |
Simple_repeat |
| scaffold46180 |
53165 |
53200 |
+ |
(AGATGA)n |
Simple_repeat |
| scaffold46180 |
54003 |
54240 |
- |
RS3413 |
Unspecified |
| scaffold46180 |
54199 |
54249 |
+ |
RS14977 |
Unspecified |
| scaffold46180 |
54554 |
54616 |
- |
Copia-66_Mad-I |
LTR/Copia |
| scaffold46180 |
55249 |
55295 |
+ |
(T)n |
Simple_repeat |
| scaffold46180 |
55905 |
56040 |
- |
Copia-102_Mad-I |
LTR/Copia |
| scaffold46180 |
61240 |
61424 |
+ |
RS1680 |
Unspecified |
| scaffold46180 |
61423 |
61464 |
+ |
RS677 |
Unspecified |
| scaffold46180 |
61697 |
62132 |
+ |
(GATGAA)n |
Simple_repeat |
| scaffold46180 |
62080 |
62132 |
+ |
(GATGAA)n |
Simple_repeat |
| scaffold46180 |
62497 |
62540 |
+ |
(A)n |
Simple_repeat |
| scaffold46180 |
62845 |
62915 |
- |
RS16136 |
Unspecified |
| scaffold46180 |
63028 |
63163 |
- |
RS326 |
Unspecified |
| scaffold46180 |
63028 |
63136 |
+ |
RS846 |
Unspecified |
| scaffold46180 |
63094 |
63277 |
+ |
RS846 |
Unspecified |
| scaffold46180 |
63138 |
63265 |
- |
RS326 |
Unspecified |
| scaffold46180 |
63240 |
63401 |
+ |
RS846 |
Unspecified |
| scaffold46180 |
63318 |
63418 |
- |
RS6740 |
Unspecified |
| scaffold46180 |
63666 |
63702 |
+ |
(T)n |
Simple_repeat |
| scaffold46180 |
64541 |
64575 |
+ |
(ATAACA)n |
Simple_repeat |
| scaffold46180 |
65166 |
65266 |
- |
RS1680 |
Unspecified |
| scaffold46180 |
66094 |
66143 |
+ |
(AATA)n |
Simple_repeat |
| scaffold46180 |
66535 |
66578 |
+ |
(TTTGA)n |
Simple_repeat |
| scaffold46180 |
66579 |
66602 |
+ |
(TTTTGA)n |
Simple_repeat |
| scaffold46180 |
68081 |
68097 |
+ |
(GT)n |
Simple_repeat |
| scaffold46180 |
73921 |
73953 |
+ |
(TCTTCA)n |
Simple_repeat |
| scaffold46180 |
75018 |
75116 |
- |
RS1190 |
Unspecified |
| scaffold46180 |
75170 |
75193 |
+ |
(A)n |
Simple_repeat |
| scaffold46180 |
76344 |
76366 |
+ |
(T)n |
Simple_repeat |
| scaffold46180 |
82949 |
83006 |
- |
HAT-N10_Mad |
DNA/hAT-Ac |
| scaffold46180 |
83310 |
83366 |
- |
HAT-N10_Mad |
DNA/hAT-Ac |
| scaffold46180 |
83658 |
83704 |
+ |
GA-rich |
Low_complexity |
| scaffold46180 |
86420 |
86439 |
+ |
(T)n |
Simple_repeat |
| scaffold46180 |
87244 |
87287 |
+ |
(TTGTGA)n |
Simple_repeat |
| scaffold46180 |
87871 |
88112 |
- |
RS4 |
Unspecified |
| scaffold46180 |
90590 |
90608 |
+ |
(T)n |
Simple_repeat |
| scaffold46180 |
90965 |
90994 |
+ |
(TGAATT)n |
Simple_repeat |
| scaffold46180 |
91083 |
91327 |
- |
RS281 |
Unspecified |
| scaffold46180 |
91709 |
91771 |
+ |
(TTTCAGC)n |
Simple_repeat |
| scaffold46180 |
92177 |
92213 |
+ |
(AGCTTTC)n |
Simple_repeat |
| scaffold46180 |
92620 |
92649 |
+ |
(A)n |
Simple_repeat |
| scaffold46180 |
93161 |
93202 |
+ |
A-rich |
Low_complexity |
| scaffold46180 |
93335 |
93411 |
+ |
(TAA)n |
Simple_repeat |
| scaffold46180 |
93376 |
93415 |
+ |
(AATATG)n |
Simple_repeat |
| scaffold46180 |
94697 |
94761 |
+ |
(TTATAT)n |
Simple_repeat |
| scaffold46180 |
94955 |
95000 |
+ |
(TTTTTTA)n |
Simple_repeat |
| scaffold46180 |
96226 |
96642 |
- |
PL2 |
Unspecified |
| scaffold46180 |
96788 |
96857 |
+ |
(ATTTTTT)n |
Simple_repeat |
| scaffold46180 |
97208 |
97307 |
+ |
(CTGAA)n |
Simple_repeat |
| scaffold46180 |
97341 |
97378 |
+ |
(ATT)n |
Simple_repeat |
| scaffold46180 |
97487 |
97558 |
- |
EnSpm1_SB |
DNA/CMC-EnSpm |
| scaffold46180 |
97559 |
97644 |
+ |
(AAC)n |
Simple_repeat |
| scaffold46180 |
97645 |
97676 |
- |
EnSpm1_SB |
DNA/CMC-EnSpm |
| scaffold46180 |
97715 |
98007 |
- |
RS2636 |
Unspecified |
| scaffold46180 |
100062 |
100101 |
+ |
L1-14_Mad |
LINE/L1 |
| scaffold46180 |
102698 |
102733 |
+ |
(TA)n |
Simple_repeat |
| scaffold46180 |
103239 |
103274 |
+ |
(CAACCAC)n |
Simple_repeat |
| scaffold46180 |
103764 |
104380 |
+ |
PIGY-I_PS |
LTR/Gypsy |
| scaffold46180 |
105108 |
105139 |
+ |
(GCCG)n |
Simple_repeat |
| scaffold46180 |
105372 |
105414 |
+ |
Gypsy-10_Mad-I |
LTR/Gypsy |
| scaffold46180 |
106823 |
106859 |
+ |
WHAM2_TM-int |
LTR/Gypsy |
| scaffold46180 |
107196 |
107232 |
+ |
(CCGG)n |
Simple_repeat |
| scaffold46180 |
107331 |
107377 |
+ |
(TTTTAG)n |
Simple_repeat |
| scaffold46180 |
108244 |
108319 |
+ |
(TT)n |
Simple_repeat |
| scaffold46180 |
108346 |
108381 |
+ |
(GGTGAC)n |
Simple_repeat |
| scaffold46180 |
109312 |
109593 |
- |
ISC1316 |
ISC1316(TransposonPSI) |
| scaffold46180 |
109831 |
110027 |
+ |
RS4609 |
Unspecified |
| scaffold46180 |
110028 |
110219 |
- |
RS41 |
Unspecified |
| scaffold46180 |
110232 |
110475 |
+ |
(T)n |
Simple_repeat |
| scaffold46180 |
110232 |
110272 |
+ |
(T)n |
Simple_repeat |
| scaffold46180 |
110267 |
110475 |
+ |
RS4609 |
Unspecified |
| scaffold46180 |
110542 |
110582 |
+ |
(T)n |
Simple_repeat |
| scaffold46180 |
110675 |
110888 |
+ |
RS4609 |
Unspecified |
| scaffold46180 |
110989 |
111196 |
+ |
RS4609 |
Unspecified |
| scaffold46180 |
112366 |
112392 |
+ |
A-rich |
Low_complexity |
| scaffold46180 |
112505 |
112531 |
+ |
(TA)n |
Simple_repeat |
| scaffold46180 |
114825 |
115699 |
- |
PL510 |
Unspecified |
| scaffold46180 |
115082 |
115799 |
- |
RS1941 |
Unspecified |
| scaffold46180 |
115909 |
116537 |
+ |
RS2725 |
Unspecified |
| scaffold46180 |
117353 |
117427 |
+ |
A-rich |
Low_complexity |
| scaffold46180 |
119136 |
119628 |
+ |
RS2084 |
Unspecified |
| scaffold46180 |
123066 |
123147 |
+ |
Gypsy-32_Mad-LTR |
LTR/Gypsy |