scaffold4648 Repeat List
| genome |
start |
end |
strand |
repeat-name |
repeat-class |
| scaffold4648 |
6 |
128 |
+ |
Gypsy-38_Mad-I |
LTR/Gypsy |
| scaffold4648 |
409 |
445 |
+ |
A-rich |
Low_complexity |
| scaffold4648 |
555 |
610 |
+ |
A-rich |
Low_complexity |
| scaffold4648 |
583 |
642 |
+ |
(CATAA)n |
Simple_repeat |
| scaffold4648 |
830 |
891 |
+ |
(CATAA)n |
Simple_repeat |
| scaffold4648 |
1157 |
1220 |
+ |
(CACCAG)n |
Simple_repeat |
| scaffold4648 |
1157 |
1295 |
+ |
(CACCAG)n |
Simple_repeat |
| scaffold4648 |
1208 |
1295 |
+ |
RS13331 |
Unspecified |
| scaffold4648 |
2670 |
2691 |
+ |
(CAT)n |
Simple_repeat |
| scaffold4648 |
3327 |
3523 |
- |
PL743 |
Unspecified |
| scaffold4648 |
4716 |
4839 |
+ |
COPI1_LTR |
LTR/Copia |
| scaffold4648 |
5142 |
5163 |
+ |
(AG)n |
Simple_repeat |
| scaffold4648 |
5472 |
5665 |
- |
RS82 |
Unspecified |
| scaffold4648 |
6216 |
6478 |
+ |
RS3356 |
Unspecified |
| scaffold4648 |
9812 |
9972 |
+ |
TOTO1_LP_I-int |
LTR/Copia |
| scaffold4648 |
10491 |
10586 |
+ |
A-rich |
Low_complexity |
| scaffold4648 |
10530 |
10586 |
+ |
A-rich |
Low_complexity |
| scaffold4648 |
10606 |
10680 |
+ |
DNA-TA-1_STu |
DNA/TcMar-Stowaway |
| scaffold4648 |
11061 |
11491 |
+ |
PL301 |
Unspecified |
| scaffold4648 |
15681 |
15721 |
+ |
(GTT)n |
Simple_repeat |
| scaffold4648 |
16554 |
16637 |
+ |
PL517 |
Unspecified |
| scaffold4648 |
16712 |
16770 |
+ |
(CTGAA)n |
Simple_repeat |
| scaffold4648 |
16795 |
16869 |
+ |
(CTGAA)n |
Simple_repeat |
| scaffold4648 |
16930 |
16950 |
+ |
(ATAA)n |
Simple_repeat |
| scaffold4648 |
17156 |
17190 |
+ |
(TTTTAA)n |
Simple_repeat |
| scaffold4648 |
18162 |
18216 |
+ |
A-rich |
Low_complexity |
| scaffold4648 |
18968 |
19043 |
+ |
(ATA)n |
Simple_repeat |
| scaffold4648 |
19260 |
19309 |
+ |
A-rich |
Low_complexity |
| scaffold4648 |
19348 |
19869 |
- |
PL831 |
Unspecified |
| scaffold4648 |
20016 |
20289 |
- |
PL721 |
Unspecified |
| scaffold4648 |
20315 |
20413 |
+ |
(TTCAG)n |
Simple_repeat |
| scaffold4648 |
20649 |
21166 |
- |
PL831 |
Unspecified |
| scaffold4648 |
21508 |
21546 |
+ |
A-rich |
Low_complexity |
| scaffold4648 |
21923 |
22215 |
+ |
(T)n |
Simple_repeat |
| scaffold4648 |
22163 |
22215 |
+ |
(T)n |
Simple_repeat |
| scaffold4648 |
22796 |
22854 |
- |
RS14955 |
Unspecified |
| scaffold4648 |
22875 |
22900 |
+ |
(T)n |
Simple_repeat |
| scaffold4648 |
22901 |
22907 |
+ |
(TTATTTT)n |
Simple_repeat |
| scaffold4648 |
25195 |
25318 |
- |
RS5090 |
Unspecified |
| scaffold4648 |
25454 |
25484 |
+ |
(T)n |
Simple_repeat |
| scaffold4648 |
26090 |
26129 |
+ |
(T)n |
Simple_repeat |
| scaffold4648 |
26156 |
26383 |
+ |
PL288 |
Unspecified |
| scaffold4648 |
26489 |
26580 |
- |
LTR-7_Mad-LTR |
LTR |
| scaffold4648 |
26655 |
26737 |
+ |
PL560 |
Unspecified |
| scaffold4648 |
26738 |
27281 |
- |
RS126 |
Unspecified |
| scaffold4648 |
29445 |
29536 |
+ |
(T)n |
Simple_repeat |
| scaffold4648 |
29445 |
29736 |
+ |
(T)n |
Simple_repeat |
| scaffold4648 |
29525 |
29736 |
+ |
RS549 |
Unspecified |
| scaffold4648 |
31046 |
31141 |
+ |
ATRAN |
DNA? |
| scaffold4648 |
32246 |
32308 |
+ |
GA-rich |
Low_complexity |
| scaffold4648 |
32763 |
32814 |
+ |
(TGATT)n |
Simple_repeat |
| scaffold4648 |
36024 |
36048 |
+ |
(T)n |
Simple_repeat |
| scaffold4648 |
36168 |
36201 |
+ |
(TG)n |
Simple_repeat |
| scaffold4648 |
36680 |
36886 |
+ |
cacta |
cacta(TransposonPSI) |
| scaffold4648 |
37174 |
37195 |
+ |
(TTA)n |
Simple_repeat |
| scaffold4648 |
41086 |
41258 |
+ |
RS15511 |
Unspecified |
| scaffold4648 |
41737 |
41909 |
+ |
RS15511 |
Unspecified |
| scaffold4648 |
43432 |
43608 |
+ |
RS17457 |
Unspecified |
| scaffold4648 |
43866 |
43886 |
+ |
(A)n |
Simple_repeat |
| scaffold4648 |
43932 |
43971 |
+ |
(TATTTA)n |
Simple_repeat |
| scaffold4648 |
44748 |
44791 |
- |
RS29 |
Unspecified |
| scaffold4648 |
44831 |
45007 |
+ |
RS17457 |
Unspecified |
| scaffold4648 |
45267 |
45287 |
+ |
(A)n |
Simple_repeat |
| scaffold4648 |
45333 |
45372 |
+ |
(TATTTA)n |
Simple_repeat |
| scaffold4648 |
46149 |
46460 |
+ |
RS873 |
Unspecified |
| scaffold4648 |
47215 |
47464 |
- |
RS193 |
Unspecified |
| scaffold4648 |
48043 |
48325 |
+ |
(TAT)n |
Simple_repeat |
| scaffold4648 |
48228 |
48325 |
+ |
(TAT)n |
Simple_repeat |
| scaffold4648 |
48719 |
48737 |
+ |
(A)n |
Simple_repeat |
| scaffold4648 |
49173 |
49204 |
+ |
(TTC)n |
Simple_repeat |
| scaffold4648 |
49207 |
49536 |
- |
RS1868 |
Unspecified |
| scaffold4648 |
49529 |
49719 |
+ |
(CCCGA)n |
Simple_repeat |
| scaffold4648 |
49867 |
50015 |
+ |
(CCCGA)n |
Simple_repeat |
| scaffold4648 |
50028 |
50344 |
- |
RS1868 |
Unspecified |
| scaffold4648 |
50438 |
50464 |
+ |
(CGGCC)n |
Simple_repeat |
| scaffold4648 |
50471 |
50495 |
+ |
(TTA)n |
Simple_repeat |
| scaffold4648 |
51232 |
51874 |
- |
RS1868 |
Unspecified |
| scaffold4648 |
51775 |
52069 |
+ |
RS4359 |
Unspecified |
| scaffold4648 |
52117 |
52380 |
- |
RS10417 |
Unspecified |
| scaffold4648 |
52379 |
52432 |
+ |
(TTA)n |
Simple_repeat |
| scaffold4648 |
52465 |
52534 |
+ |
(AATTAT)n |
Simple_repeat |
| scaffold4648 |
53681 |
53862 |
- |
RS1714 |
Unspecified |
| scaffold4648 |
53927 |
54160 |
- |
RS1714 |
Unspecified |
| scaffold4648 |
53960 |
54160 |
- |
RS1714 |
Unspecified |
| scaffold4648 |
54248 |
54396 |
+ |
RS2126 |
Unspecified |
| scaffold4648 |
55171 |
55307 |
- |
PL469 |
Unspecified |
| scaffold4648 |
55604 |
55889 |
- |
RS1746 |
Unspecified |
| scaffold4648 |
59582 |
59812 |
+ |
RS41 |
Unspecified |
| scaffold4648 |
60985 |
61204 |
- |
Copia-3_PTri-I |
LTR/Copia |
| scaffold4648 |
61205 |
61281 |
- |
Copia-3_PTri-I |
LTR/Copia |
| scaffold4648 |
62046 |
62196 |
+ |
(AAT)n |
Simple_repeat |
| scaffold4648 |
62148 |
62196 |
+ |
(AAT)n |
Simple_repeat |
| scaffold4648 |
62211 |
62282 |
+ |
(TT)n |
Simple_repeat |
| scaffold4648 |
62837 |
62863 |
+ |
(A)n |
Simple_repeat |
| scaffold4648 |
63144 |
63173 |
+ |
(TTGAA)n |
Simple_repeat |
| scaffold4648 |
63979 |
64012 |
+ |
(TTGAAT)n |
Simple_repeat |
| scaffold4648 |
64414 |
64820 |
- |
RS6151 |
Unspecified |
| scaffold4648 |
66351 |
66453 |
+ |
RS5576 |
Unspecified |
| scaffold4648 |
66605 |
66633 |
+ |
(C)n |
Simple_repeat |
| scaffold4648 |
66871 |
66905 |
+ |
A-rich |
Low_complexity |
| scaffold4648 |
67397 |
67413 |
+ |
(A)n |
Simple_repeat |
| scaffold4648 |
67556 |
67587 |
+ |
(ATATTA)n |
Simple_repeat |
| scaffold4648 |
68030 |
68102 |
+ |
Copia-3_PTri-I |
LTR/Copia |
| scaffold4648 |
68103 |
68234 |
+ |
Copia-3_PTri-I |
LTR/Copia |
| scaffold4648 |
68245 |
68365 |
+ |
Copia-3_PTri-I |
LTR/Copia |
| scaffold4648 |
68362 |
68517 |
+ |
(A)n |
Simple_repeat |
| scaffold4648 |
68494 |
68517 |
+ |
(A)n |
Simple_repeat |
| scaffold4648 |
68856 |
69095 |
- |
RS4 |
Unspecified |
| scaffold4648 |
69318 |
69338 |
+ |
(C)n |
Simple_repeat |
| scaffold4648 |
70358 |
70684 |
- |
L1-5_EPa |
LINE/L1 |
| scaffold4648 |
70830 |
71689 |
- |
OSLINE1_1 |
LINE/L1 |
| scaffold4648 |
71707 |
71859 |
- |
RS84 |
Unspecified |
| scaffold4648 |
72848 |
73163 |
- |
RS5445 |
Unspecified |
| scaffold4648 |
73207 |
73371 |
+ |
RS1178 |
Unspecified |
| scaffold4648 |
73489 |
73575 |
+ |
(TATAT)n |
Simple_repeat |
| scaffold4648 |
74110 |
74263 |
+ |
RS7290 |
Unspecified |
| scaffold4648 |
75064 |
75111 |
+ |
(CAA)n |
Simple_repeat |
| scaffold4648 |
75121 |
75505 |
- |
RS11648 |
Unspecified |
| scaffold4648 |
76394 |
76447 |
+ |
(ATGATA)n |
Simple_repeat |
| scaffold4648 |
76788 |
76812 |
+ |
(AT)n |
Simple_repeat |
| scaffold4648 |
76854 |
76888 |
+ |
(AT)n |
Simple_repeat |
| scaffold4648 |
76956 |
77036 |
+ |
RS16358 |
Unspecified |
| scaffold4648 |
77646 |
77682 |
+ |
A-rich |
Low_complexity |
| scaffold4648 |
78285 |
78313 |
+ |
(T)n |
Simple_repeat |
| scaffold4648 |
79230 |
80704 |
+ |
Copia-71_VV-I |
LTR/Copia |
| scaffold4648 |
80726 |
81381 |
- |
RS424 |
Unspecified |
| scaffold4648 |
81423 |
82347 |
+ |
Copia-71_VV-I |
LTR/Copia |
| scaffold4648 |
82371 |
82668 |
- |
PL9 |
Unspecified |
| scaffold4648 |
85224 |
85341 |
+ |
RS3000 |
Unspecified |
| scaffold4648 |
85247 |
85355 |
+ |
RS711 |
Unspecified |
| scaffold4648 |
85604 |
85850 |
- |
RS16888 |
Unspecified |
| scaffold4648 |
87381 |
87607 |
- |
RS1340 |
Unspecified |
| scaffold4648 |
87581 |
87895 |
- |
RS1340 |
Unspecified |
| scaffold4648 |
88357 |
88382 |
+ |
(T)n |
Simple_repeat |
| scaffold4648 |
88634 |
88696 |
+ |
(TTTTT)n |
Simple_repeat |
| scaffold4648 |
89167 |
89444 |
+ |
RS592 |
Unspecified |
| scaffold4648 |
89440 |
89802 |
+ |
RS589 |
Unspecified |
| scaffold4648 |
89803 |
89873 |
+ |
Copia-3_PTri-I |
LTR/Copia |
| scaffold4648 |
89874 |
90056 |
+ |
Copia-3_PTri-I |
LTR/Copia |
| scaffold4648 |
90056 |
90224 |
+ |
RS589 |
Unspecified |
| scaffold4648 |
90121 |
90258 |
+ |
RS334 |
Unspecified |
| scaffold4648 |
90654 |
90697 |
+ |
A-rich |
Low_complexity |
| scaffold4648 |
91528 |
91571 |
+ |
A-rich |
Low_complexity |