scaffold4728 Repeat List
| genome |
start |
end |
strand |
repeat-name |
repeat-class |
| scaffold4728 |
49 |
332 |
- |
LTR-1_SBi-LTR |
LTR |
| scaffold4728 |
387 |
634 |
- |
RS475 |
Unspecified |
| scaffold4728 |
999 |
1308 |
- |
PL424 |
Unspecified |
| scaffold4728 |
1567 |
1603 |
+ |
(AATAA)n |
Simple_repeat |
| scaffold4728 |
2105 |
2143 |
+ |
A-rich |
Low_complexity |
| scaffold4728 |
2338 |
2661 |
- |
PL424 |
Unspecified |
| scaffold4728 |
3080 |
3147 |
+ |
(TATACATT)n |
Simple_repeat |
| scaffold4728 |
3261 |
3489 |
+ |
RS416 |
Unspecified |
| scaffold4728 |
3709 |
3742 |
+ |
A-rich |
Low_complexity |
| scaffold4728 |
4565 |
4600 |
+ |
(ACTTTAA)n |
Simple_repeat |
| scaffold4728 |
6373 |
6418 |
+ |
(ATTAATA)n |
Simple_repeat |
| scaffold4728 |
6883 |
6900 |
+ |
(T)n |
Simple_repeat |
| scaffold4728 |
7011 |
7055 |
+ |
(AGTTC)n |
Simple_repeat |
| scaffold4728 |
7459 |
7489 |
+ |
(A)n |
Simple_repeat |
| scaffold4728 |
7574 |
7614 |
+ |
(ATT)n |
Simple_repeat |
| scaffold4728 |
8377 |
8409 |
+ |
(CTAATC)n |
Simple_repeat |
| scaffold4728 |
8966 |
9218 |
+ |
PL959 |
Unspecified |
| scaffold4728 |
10201 |
10521 |
+ |
RS16270 |
Unspecified |
| scaffold4728 |
12010 |
12035 |
+ |
(TAA)n |
Simple_repeat |
| scaffold4728 |
12113 |
12247 |
- |
RS3561 |
Unspecified |
| scaffold4728 |
13316 |
13500 |
+ |
RS10772 |
Unspecified |
| scaffold4728 |
13394 |
13632 |
- |
RS2392 |
Unspecified |
| scaffold4728 |
13432 |
13714 |
+ |
RS7545 |
Unspecified |
| scaffold4728 |
13483 |
14101 |
+ |
RS4448 |
Unspecified |
| scaffold4728 |
15401 |
15629 |
+ |
Copia-85_ST-I |
LTR/Copia |
| scaffold4728 |
16080 |
16119 |
+ |
(ATA)n |
Simple_repeat |
| scaffold4728 |
16951 |
17938 |
- |
RS1460 |
Unspecified |
| scaffold4728 |
19583 |
19767 |
+ |
RS4 |
Unspecified |
| scaffold4728 |
20929 |
20953 |
+ |
(ATAA)n |
Simple_repeat |
| scaffold4728 |
21206 |
21235 |
+ |
(AAATA)n |
Simple_repeat |
| scaffold4728 |
21935 |
21951 |
+ |
(A)n |
Simple_repeat |
| scaffold4728 |
21961 |
21995 |
+ |
(AAT)n |
Simple_repeat |
| scaffold4728 |
22077 |
22096 |
+ |
(TAT)n |
Simple_repeat |
| scaffold4728 |
22771 |
22844 |
+ |
Copia-3_PTri-I |
LTR/Copia |
| scaffold4728 |
22845 |
23055 |
+ |
Copia-3_PTri-I |
LTR/Copia |
| scaffold4728 |
23105 |
23174 |
+ |
(AATAA)n |
Simple_repeat |
| scaffold4728 |
24415 |
24443 |
+ |
(TTA)n |
Simple_repeat |
| scaffold4728 |
24444 |
24480 |
+ |
(TA)n |
Simple_repeat |
| scaffold4728 |
24481 |
24526 |
+ |
(TTA)n |
Simple_repeat |
| scaffold4728 |
25252 |
25285 |
+ |
(TGCT)n |
Simple_repeat |
| scaffold4728 |
25937 |
26015 |
+ |
(TATAT)n |
Simple_repeat |
| scaffold4728 |
26296 |
26909 |
- |
RS516 |
Unspecified |
| scaffold4728 |
27843 |
28110 |
+ |
RS892 |
Unspecified |
| scaffold4728 |
28953 |
29371 |
- |
RS1434 |
Unspecified |
| scaffold4728 |
30158 |
30244 |
+ |
Gypsy-72-LTR_ZM |
LTR/Gypsy |
| scaffold4728 |
30999 |
31060 |
+ |
(AATA)n |
Simple_repeat |
| scaffold4728 |
31299 |
31717 |
- |
PL143 |
Unspecified |
| scaffold4728 |
31977 |
32048 |
+ |
A-rich |
Low_complexity |
| scaffold4728 |
32229 |
32275 |
+ |
A-rich |
Low_complexity |
| scaffold4728 |
34462 |
34496 |
+ |
(T)n |
Simple_repeat |
| scaffold4728 |
34973 |
34991 |
+ |
(T)n |
Simple_repeat |
| scaffold4728 |
35785 |
35979 |
- |
RS13085 |
Unspecified |
| scaffold4728 |
36313 |
36333 |
+ |
(A)n |
Simple_repeat |
| scaffold4728 |
36724 |
36803 |
+ |
(AATTAT)n |
Simple_repeat |
| scaffold4728 |
37219 |
37238 |
+ |
(T)n |
Simple_repeat |
| scaffold4728 |
37349 |
37390 |
+ |
(CATTTCT)n |
Simple_repeat |
| scaffold4728 |
37438 |
38124 |
+ |
(CAGCT)n |
Simple_repeat |
| scaffold4728 |
38750 |
38785 |
+ |
(AAT)n |
Simple_repeat |
| scaffold4728 |
38897 |
39010 |
- |
ATCopia34_LTR |
LTR/Copia |
| scaffold4728 |
39074 |
39125 |
+ |
(CAGTT)n |
Simple_repeat |
| scaffold4728 |
39143 |
39220 |
+ |
(TTCAG)n |
Simple_repeat |
| scaffold4728 |
39240 |
39441 |
+ |
RS1931 |
Unspecified |
| scaffold4728 |
40614 |
40638 |
+ |
(T)n |
Simple_repeat |
| scaffold4728 |
41793 |
41978 |
+ |
RS4 |
Unspecified |
| scaffold4728 |
41870 |
41992 |
- |
RS3427 |
Unspecified |
| scaffold4728 |
43158 |
43189 |
+ |
(TTAA)n |
Simple_repeat |
| scaffold4728 |
43327 |
43363 |
+ |
(ATTTT)n |
Simple_repeat |
| scaffold4728 |
43734 |
43843 |
- |
PL53 |
Unspecified |
| scaffold4728 |
43828 |
44141 |
+ |
PL683 |
Unspecified |
| scaffold4728 |
44716 |
44765 |
+ |
(CCGCCC)n |
Simple_repeat |
| scaffold4728 |
44789 |
44826 |
+ |
A-rich |
Low_complexity |
| scaffold4728 |
45288 |
45364 |
+ |
(TA)n |
Simple_repeat |
| scaffold4728 |
45723 |
45809 |
+ |
(AT)n |
Simple_repeat |
| scaffold4728 |
46215 |
46268 |
+ |
(AATTT)n |
Simple_repeat |
| scaffold4728 |
49157 |
49328 |
+ |
RS503 |
Unspecified |
| scaffold4728 |
50703 |
50914 |
+ |
RS4 |
Unspecified |
| scaffold4728 |
51206 |
51242 |
+ |
A-rich |
Low_complexity |
| scaffold4728 |
51810 |
51846 |
+ |
(TC)n |
Simple_repeat |
| scaffold4728 |
51850 |
52095 |
- |
RS4 |
Unspecified |
| scaffold4728 |
53106 |
53250 |
+ |
RS14371 |
Unspecified |
| scaffold4728 |
53587 |
53687 |
- |
RS4475 |
Unspecified |
| scaffold4728 |
54388 |
54563 |
- |
PL850 |
Unspecified |
| scaffold4728 |
57662 |
57766 |
+ |
RS702 |
Unspecified |
| scaffold4728 |
57747 |
57841 |
- |
RS702 |
Unspecified |
| scaffold4728 |
57841 |
57960 |
- |
RS4475 |
Unspecified |
| scaffold4728 |
57849 |
57942 |
+ |
RS16382 |
Unspecified |
| scaffold4728 |
58208 |
58257 |
+ |
A-rich |
Low_complexity |
| scaffold4728 |
58429 |
58457 |
+ |
(TTAATT)n |
Simple_repeat |
| scaffold4728 |
58695 |
58728 |
+ |
(ATA)n |
Simple_repeat |
| scaffold4728 |
59257 |
59577 |
- |
RS210 |
Unspecified |
| scaffold4728 |
60598 |
60658 |
+ |
(AT)n |
Simple_repeat |
| scaffold4728 |
60662 |
60752 |
- |
PL208 |
Unspecified |
| scaffold4728 |
60719 |
61644 |
- |
PL670 |
Unspecified |
| scaffold4728 |
61621 |
61823 |
- |
RS5738 |
Unspecified |
| scaffold4728 |
61646 |
61953 |
- |
RS158 |
Unspecified |
| scaffold4728 |
62068 |
62158 |
- |
Gypsy21-PTR_I-int |
LTR/Gypsy |
| scaffold4728 |
62613 |
62836 |
- |
RS2156 |
Unspecified |
| scaffold4728 |
62836 |
62889 |
+ |
(AATGA)n |
Simple_repeat |
| scaffold4728 |
64682 |
64724 |
+ |
(TTAAC)n |
Simple_repeat |
| scaffold4728 |
64803 |
64954 |
- |
RS10917 |
Unspecified |
| scaffold4728 |
65008 |
65075 |
+ |
PL418 |
Unspecified |
| scaffold4728 |
65131 |
65185 |
+ |
(ATA)n |
Simple_repeat |
| scaffold4728 |
65842 |
65872 |
+ |
(AT)n |
Simple_repeat |
| scaffold4728 |
66434 |
66586 |
+ |
(AATATA)n |
Simple_repeat |
| scaffold4728 |
66690 |
66838 |
+ |
A-rich |
Low_complexity |
| scaffold4728 |
66690 |
66743 |
+ |
A-rich |
Low_complexity |
| scaffold4728 |
66737 |
66838 |
+ |
RS14266 |
Unspecified |
| scaffold4728 |
66760 |
66865 |
- |
RS16025 |
Unspecified |
| scaffold4728 |
66925 |
67222 |
- |
PL169 |
Unspecified |
| scaffold4728 |
67821 |
67845 |
+ |
(CAC)n |
Simple_repeat |
| scaffold4728 |
67891 |
67931 |
+ |
(CCA)n |
Simple_repeat |