scaffold4781 Repeat List
| genome |
start |
end |
strand |
repeat-name |
repeat-class |
| scaffold4781 |
319 |
910 |
- |
Gypsy16-VV_I-int |
LTR/Gypsy |
| scaffold4781 |
950 |
1157 |
+ |
(CCGGA)n |
Simple_repeat |
| scaffold4781 |
1199 |
1237 |
+ |
(TCCGG)n |
Simple_repeat |
| scaffold4781 |
1245 |
1641 |
- |
Gypsy-47_Mad-I |
LTR/Gypsy |
| scaffold4781 |
1789 |
2751 |
- |
gypsy |
gypsy(TransposonPSI) |
| scaffold4781 |
1790 |
2163 |
- |
Gypsy16-VV_I-int |
LTR/Gypsy |
| scaffold4781 |
2618 |
2743 |
- |
Gypsy16-VV_I-int |
LTR/Gypsy |
| scaffold4781 |
2831 |
3420 |
- |
Atlantys1_I-int |
LTR/Gypsy |
| scaffold4781 |
7574 |
7631 |
- |
Ogre-PT3_I-int |
LTR/Gypsy |
| scaffold4781 |
9016 |
9049 |
+ |
(GAACA)n |
Simple_repeat |
| scaffold4781 |
9616 |
9664 |
- |
PL743 |
Unspecified |
| scaffold4781 |
10458 |
10742 |
- |
LTR2-ZM_LTR |
LTR |
| scaffold4781 |
10964 |
11249 |
- |
LTR2-ZM_LTR |
LTR |
| scaffold4781 |
12184 |
12235 |
+ |
GA-rich |
Low_complexity |
| scaffold4781 |
13053 |
13127 |
+ |
A-rich |
Low_complexity |
| scaffold4781 |
13346 |
13421 |
+ |
A-rich |
Low_complexity |
| scaffold4781 |
13423 |
13786 |
+ |
RS29 |
Unspecified |
| scaffold4781 |
13782 |
14126 |
+ |
RS30 |
Unspecified |
| scaffold4781 |
16691 |
16744 |
+ |
(TAT)n |
Simple_repeat |
| scaffold4781 |
16791 |
16838 |
+ |
(TAATCA)n |
Simple_repeat |
| scaffold4781 |
17522 |
17588 |
+ |
A-rich |
Low_complexity |
| scaffold4781 |
17982 |
18037 |
+ |
(AAT)n |
Simple_repeat |
| scaffold4781 |
18518 |
18551 |
- |
RS29 |
Unspecified |
| scaffold4781 |
19597 |
19659 |
+ |
A-rich |
Low_complexity |
| scaffold4781 |
19876 |
19914 |
+ |
(GCCG)n |
Simple_repeat |
| scaffold4781 |
20338 |
20385 |
- |
WHAM2_TM-int |
LTR/Gypsy |
| scaffold4781 |
20632 |
20658 |
+ |
(T)n |
Simple_repeat |
| scaffold4781 |
21119 |
21263 |
- |
Athila6B_I-int |
LTR/Gypsy |
| scaffold4781 |
21508 |
21539 |
+ |
(GGCC)n |
Simple_repeat |
| scaffold4781 |
22306 |
22799 |
- |
PIGY-I_PS |
LTR/Gypsy |
| scaffold4781 |
24469 |
24529 |
+ |
RS616 |
Unspecified |
| scaffold4781 |
25907 |
25942 |
+ |
(GCCG)n |
Simple_repeat |
| scaffold4781 |
26665 |
26728 |
+ |
hAT-9_SBi |
DNA/hAT-Tag1 |
| scaffold4781 |
31002 |
33186 |
- |
RS564 |
Unspecified |
| scaffold4781 |
33201 |
33262 |
+ |
GA-rich |
Low_complexity |
| scaffold4781 |
34100 |
34163 |
+ |
(TTGTTT)n |
Simple_repeat |
| scaffold4781 |
35132 |
36261 |
- |
RS3063 |
Unspecified |
| scaffold4781 |
35674 |
36488 |
- |
PL921 |
Unspecified |
| scaffold4781 |
36027 |
36978 |
- |
PL554 |
Unspecified |
| scaffold4781 |
37391 |
37627 |
+ |
Gypsy-I_MT |
LTR/Gypsy |
| scaffold4781 |
38482 |
38547 |
+ |
A-rich |
Low_complexity |
| scaffold4781 |
38706 |
40049 |
+ |
gypsy |
gypsy(TransposonPSI) |
| scaffold4781 |
38736 |
40048 |
+ |
Gypsy-I_MT |
LTR/Gypsy |
| scaffold4781 |
40046 |
40121 |
+ |
PL568 |
Unspecified |
| scaffold4781 |
40048 |
40131 |
- |
PL522 |
Unspecified |
| scaffold4781 |
40117 |
41479 |
+ |
PL647 |
Unspecified |
| scaffold4781 |
41608 |
41890 |
+ |
Gypsy2-SB_I-int |
LTR/Gypsy |
| scaffold4781 |
42298 |
43325 |
+ |
Gypsy-I_MT |
LTR/Gypsy |
| scaffold4781 |
43453 |
43501 |
+ |
Gypsy-LTR_MT |
LTR/Gypsy |
| scaffold4781 |
43760 |
43795 |
+ |
A-rich |
Low_complexity |
| scaffold4781 |
43945 |
45095 |
+ |
PL554 |
Unspecified |
| scaffold4781 |
44598 |
44947 |
+ |
RS3099 |
Unspecified |
| scaffold4781 |
45401 |
45435 |
+ |
(TCCTAG)n |
Simple_repeat |
| scaffold4781 |
46504 |
46792 |
- |
PL182 |
Unspecified |
| scaffold4781 |
46565 |
47688 |
+ |
RS3063 |
Unspecified |
| scaffold4781 |
47653 |
47792 |
- |
RS6789 |
Unspecified |
| scaffold4781 |
50924 |
51592 |
- |
RS695 |
Unspecified |
| scaffold4781 |
50924 |
51521 |
+ |
PL60 |
Unspecified |
| scaffold4781 |
50949 |
51683 |
- |
RS530 |
Unspecified |
| scaffold4781 |
51653 |
51904 |
- |
RS535 |
Unspecified |
| scaffold4781 |
55616 |
55947 |
- |
PL59 |
Unspecified |
| scaffold4781 |
55947 |
56150 |
+ |
RS1819 |
Unspecified |
| scaffold4781 |
56137 |
56655 |
- |
MEGY-I_MT |
LTR/Gypsy |
| scaffold4781 |
56775 |
57316 |
- |
RS3329 |
Unspecified |
| scaffold4781 |
57607 |
57739 |
- |
MEGY-I_MT |
LTR/Gypsy |
| scaffold4781 |
58383 |
59119 |
- |
RS695 |
Unspecified |
| scaffold4781 |
58446 |
59238 |
- |
RS269 |
Unspecified |
| scaffold4781 |
61901 |
62353 |
- |
PL670 |
Unspecified |
| scaffold4781 |
62351 |
62907 |
+ |
PL746 |
Unspecified |
| scaffold4781 |
62915 |
63357 |
- |
PIGY-I_PS |
LTR/Gypsy |
| scaffold4781 |
64003 |
64063 |
- |
PIGY-I_PS |
LTR/Gypsy |
| scaffold4781 |
64476 |
64602 |
- |
PIGY-I_PS |
LTR/Gypsy |
| scaffold4781 |
64711 |
64769 |
- |
PIGY-I_PS |
LTR/Gypsy |
| scaffold4781 |
65170 |
65215 |
+ |
A-rich |
Low_complexity |
| scaffold4781 |
65689 |
65721 |
+ |
(CAA)n |
Simple_repeat |
| scaffold4781 |
67100 |
67448 |
- |
PL942 |
Unspecified |
| scaffold4781 |
67266 |
67584 |
+ |
RS1150 |
Unspecified |
| scaffold4781 |
67885 |
67918 |
+ |
(T)n |
Simple_repeat |
| scaffold4781 |
68056 |
68435 |
- |
RS792 |
Unspecified |
| scaffold4781 |
69511 |
69572 |
+ |
(AAT)n |
Simple_repeat |
| scaffold4781 |
69797 |
69849 |
+ |
A-rich |
Low_complexity |
| scaffold4781 |
70419 |
70460 |
+ |
(TATTT)n |
Simple_repeat |
| scaffold4781 |
70511 |
70538 |
+ |
(TA)n |
Simple_repeat |
| scaffold4781 |
73064 |
73124 |
+ |
A-rich |
Low_complexity |
| scaffold4781 |
73870 |
74147 |
+ |
RS2884 |
Unspecified |
| scaffold4781 |
74486 |
74526 |
+ |
(TA)n |
Simple_repeat |
| scaffold4781 |
74875 |
75020 |
+ |
(TCTGAAGTTT)n |
Simple_repeat |
| scaffold4781 |
75023 |
75094 |
+ |
(AAT)n |
Simple_repeat |
| scaffold4781 |
75095 |
75159 |
+ |
(TAT)n |
Simple_repeat |
| scaffold4781 |
75674 |
75802 |
+ |
(TTA)n |
Simple_repeat |
| scaffold4781 |
75809 |
75914 |
+ |
(TCTGAAGTTT)n |
Simple_repeat |
| scaffold4781 |
76860 |
78332 |
- |
LINE |
LINE(TransposonPSI) |
| scaffold4781 |
77206 |
77849 |
- |
L1-5_STu |
LINE/L1 |
| scaffold4781 |
78201 |
78257 |
- |
L1-5_GM |
LINE/L1 |
| scaffold4781 |
80034 |
80090 |
+ |
(AACAAG)n |
Simple_repeat |
| scaffold4781 |
80522 |
80556 |
+ |
A-rich |
Low_complexity |
| scaffold4781 |
81124 |
81819 |
+ |
RS658 |
Unspecified |
| scaffold4781 |
81847 |
82799 |
- |
RS658 |
Unspecified |
| scaffold4781 |
82799 |
82900 |
- |
RS1163 |
Unspecified |
| scaffold4781 |
82814 |
83481 |
- |
PL568 |
Unspecified |
| scaffold4781 |
83485 |
84628 |
+ |
RS51 |
Unspecified |
| scaffold4781 |
84647 |
84922 |
+ |
RS105 |
Unspecified |
| scaffold4781 |
84838 |
85434 |
+ |
RS200 |
Unspecified |
| scaffold4781 |
85435 |
85680 |
+ |
RS1415 |
Unspecified |
| scaffold4781 |
85735 |
87439 |
+ |
RS200 |
Unspecified |
| scaffold4781 |
87578 |
88193 |
+ |
RS192 |
Unspecified |
| scaffold4781 |
88349 |
88420 |
+ |
Gypsy-10_Pru-LTR |
LTR/Gypsy |
| scaffold4781 |
88901 |
89143 |
- |
RS1317 |
Unspecified |
| scaffold4781 |
88966 |
89476 |
+ |
RS784 |
Unspecified |
| scaffold4781 |
89478 |
89830 |
+ |
RS7770 |
Unspecified |
| scaffold4781 |
89780 |
90129 |
- |
RS413 |
Unspecified |
| scaffold4781 |
90123 |
90481 |
- |
RS413 |
Unspecified |
| scaffold4781 |
90428 |
90537 |
- |
RS413 |
Unspecified |
| scaffold4781 |
91043 |
91139 |
+ |
(CAGCAT)n |
Simple_repeat |
| scaffold4781 |
92091 |
93714 |
+ |
RS51 |
Unspecified |
| scaffold4781 |
93868 |
93902 |
+ |
(TAAGAAC)n |
Simple_repeat |
| scaffold4781 |
94718 |
94756 |
+ |
(GCCG)n |
Simple_repeat |
| scaffold4781 |
95064 |
95100 |
- |
WHAM2_TM-int |
LTR/Gypsy |
| scaffold4781 |
95664 |
95776 |
+ |
(T)n |
Simple_repeat |
| scaffold4781 |
96553 |
96595 |
- |
Gypsy-10_Mad-I |
LTR/Gypsy |
| scaffold4781 |
97607 |
98176 |
- |
PIGY-I_PS |
LTR/Gypsy |
| scaffold4781 |
99148 |
99281 |
- |
PIGY-LTR_PS |
LTR/Gypsy |
| scaffold4781 |
100908 |
100946 |
+ |
(GCCG)n |
Simple_repeat |
| scaffold4781 |
101250 |
101441 |
+ |
RS21 |
Unspecified |
| scaffold4781 |
101251 |
101407 |
- |
RS4782 |
Unspecified |
| scaffold4781 |
101441 |
101720 |
+ |
RS105 |
Unspecified |
| scaffold4781 |
101631 |
101943 |
+ |
RS105 |
Unspecified |
| scaffold4781 |
102835 |
102893 |
+ |
(CAGCAA)n |
Simple_repeat |
| scaffold4781 |
104545 |
104610 |
- |
OPHELIA3_HV |
LTR/Gypsy |
| scaffold4781 |
107469 |
107495 |
- |
Gypsy-16_Mad-I |
LTR/Gypsy |
| scaffold4781 |
108555 |
109609 |
- |
RS265 |
Unspecified |
| scaffold4781 |
110342 |
110896 |
+ |
RS220 |
Unspecified |
| scaffold4781 |
111244 |
112589 |
- |
RS1415 |
Unspecified |
| scaffold4781 |
112940 |
113008 |
+ |
(AACTG)n |
Simple_repeat |
| scaffold4781 |
113009 |
113199 |
+ |
(GAACT)n |
Simple_repeat |
| scaffold4781 |
113200 |
113297 |
+ |
(AACTG)n |
Simple_repeat |
| scaffold4781 |
115089 |
115118 |
+ |
(A)n |
Simple_repeat |
| scaffold4781 |
115314 |
115358 |
+ |
(TAAT)n |
Simple_repeat |
| scaffold4781 |
115462 |
115533 |
+ |
Copia-66_ST-I |
LTR/Copia |
| scaffold4781 |
116843 |
116880 |
+ |
(CCGCCA)n |
Simple_repeat |
| scaffold4781 |
117357 |
117386 |
+ |
A-rich |
Low_complexity |
| scaffold4781 |
117384 |
117659 |
- |
RS15867 |
Unspecified |
| scaffold4781 |
117927 |
117978 |
+ |
Mariner1_BV |
DNA/TcMar-Stowaway |
| scaffold4781 |
118411 |
118454 |
+ |
(GCCG)n |
Simple_repeat |
| scaffold4781 |
119474 |
119699 |
+ |
(CAGTT)n |
Simple_repeat |
| scaffold4781 |
119825 |
119848 |
+ |
(T)n |
Simple_repeat |
| scaffold4781 |
120450 |
120480 |
+ |
A-rich |
Low_complexity |
| scaffold4781 |
120478 |
120753 |
- |
RS15867 |
Unspecified |
| scaffold4781 |
121022 |
121575 |
+ |
Mariner-1_GM |
DNA/TcMar-Stowaway |
| scaffold4781 |
123292 |
123313 |
+ |
(A)n |
Simple_repeat |
| scaffold4781 |
123746 |
123982 |
+ |
RS246 |
Unspecified |
| scaffold4781 |
124023 |
124378 |
+ |
Mariner-1_GM |
DNA/TcMar-Stowaway |
| scaffold4781 |
124696 |
124724 |
+ |
(ATAA)n |
Simple_repeat |
| scaffold4781 |
124888 |
125410 |
- |
RS403 |
Unspecified |
| scaffold4781 |
125002 |
125638 |
+ |
RS14 |
Unspecified |
| scaffold4781 |
125971 |
125992 |
+ |
(A)n |
Simple_repeat |
| scaffold4781 |
126428 |
126484 |
+ |
RS1147 |
Unspecified |
| scaffold4781 |
126712 |
126744 |
+ |
(A)n |
Simple_repeat |
| scaffold4781 |
129110 |
129121 |
+ |
(TTTTTC)n |
Simple_repeat |
| scaffold4781 |
129122 |
129149 |
+ |
(T)n |
Simple_repeat |
| scaffold4781 |
130867 |
130921 |
+ |
(AT)n |
Simple_repeat |
| scaffold4781 |
131627 |
131660 |
+ |
(T)n |
Simple_repeat |
| scaffold4781 |
133774 |
133824 |
+ |
(AATTA)n |
Simple_repeat |
| scaffold4781 |
134590 |
134609 |
+ |
(A)n |
Simple_repeat |
| scaffold4781 |
138145 |
138385 |
+ |
Copia-3_PTri-I |
LTR/Copia |
| scaffold4781 |
138177 |
138385 |
+ |
Copia-3_PTri-I |
LTR/Copia |
| scaffold4781 |
138899 |
138979 |
+ |
RS908 |
Unspecified |
| scaffold4781 |
138992 |
139076 |
+ |
LTR-7_Mad-LTR |
LTR |
| scaffold4781 |
139757 |
139793 |
+ |
(T)n |
Simple_repeat |
| scaffold4781 |
142445 |
142491 |
+ |
(CTG)n |
Simple_repeat |
| scaffold4781 |
144602 |
144684 |
+ |
(GAACT)n |
Simple_repeat |
| scaffold4781 |
147820 |
147851 |
+ |
(CTACT)n |
Simple_repeat |
| scaffold4781 |
148000 |
148128 |
+ |
GA-rich |
Low_complexity |
| scaffold4781 |
148306 |
148334 |
+ |
A-rich |
Low_complexity |
| scaffold4781 |
148335 |
148380 |
+ |
(AATGA)n |
Simple_repeat |
| scaffold4781 |
148518 |
148557 |
+ |
(T)n |
Simple_repeat |
| scaffold4781 |
148820 |
148853 |
+ |
(A)n |
Simple_repeat |
| scaffold4781 |
151344 |
151440 |
+ |
A-rich |
Low_complexity |
| scaffold4781 |
151882 |
151906 |
+ |
(T)n |
Simple_repeat |
| scaffold4781 |
153126 |
153266 |
+ |
L1-16_Mad |
LINE/L1 |