scaffold5061 Repeat List
| genome |
start |
end |
strand |
repeat-name |
repeat-class |
| scaffold5061 |
1 |
703 |
- |
RS108 |
Unspecified |
| scaffold5061 |
1760 |
1830 |
+ |
(CGGCTA)n |
Simple_repeat |
| scaffold5061 |
1836 |
1919 |
+ |
(CGAGGC)n |
Simple_repeat |
| scaffold5061 |
2550 |
2576 |
+ |
(T)n |
Simple_repeat |
| scaffold5061 |
3216 |
3302 |
+ |
(TTTTG)n |
Simple_repeat |
| scaffold5061 |
4393 |
4435 |
+ |
(TAGTAT)n |
Simple_repeat |
| scaffold5061 |
4701 |
5093 |
- |
RS10815 |
Unspecified |
| scaffold5061 |
5055 |
5157 |
+ |
(TTTTG)n |
Simple_repeat |
| scaffold5061 |
5126 |
5157 |
+ |
(TTTTG)n |
Simple_repeat |
| scaffold5061 |
5839 |
6236 |
+ |
RS7333 |
Unspecified |
| scaffold5061 |
6135 |
6612 |
- |
PL237 |
Unspecified |
| scaffold5061 |
6905 |
7478 |
+ |
RS344 |
Unspecified |
| scaffold5061 |
7316 |
7783 |
- |
RS83 |
Unspecified |
| scaffold5061 |
8025 |
9177 |
- |
Gypsy-133_GM-I |
LTR/Gypsy |
| scaffold5061 |
9390 |
11167 |
- |
Gypsy-53_GM-I |
LTR/Gypsy |
| scaffold5061 |
9390 |
11514 |
- |
Gypsy-53_GM-I |
LTR/Gypsy |
| scaffold5061 |
10965 |
11514 |
- |
RS5888 |
Unspecified |
| scaffold5061 |
12194 |
12283 |
- |
Gypsy-53_GM-I |
LTR/Gypsy |
| scaffold5061 |
14974 |
16014 |
- |
PL933 |
Unspecified |
| scaffold5061 |
17279 |
17321 |
+ |
(TTTCGGT)n |
Simple_repeat |
| scaffold5061 |
17615 |
17823 |
+ |
RS1200 |
Unspecified |
| scaffold5061 |
17859 |
17928 |
- |
Gypsy-137_GM-I |
LTR/Gypsy |
| scaffold5061 |
18506 |
19377 |
- |
Gypsy-137_GM-I |
LTR/Gypsy |
| scaffold5061 |
19535 |
19672 |
- |
Gypsy-137_GM-I |
LTR/Gypsy |
| scaffold5061 |
20445 |
20494 |
+ |
A-rich |
Low_complexity |
| scaffold5061 |
20552 |
21016 |
- |
RS5117 |
Unspecified |
| scaffold5061 |
21102 |
22253 |
+ |
gypsy |
gypsy(TransposonPSI) |
| scaffold5061 |
21861 |
21977 |
+ |
GYCUME1_I-int |
LTR/Gypsy |
| scaffold5061 |
22335 |
23721 |
+ |
GYCUME1_I-int |
LTR/Gypsy |
| scaffold5061 |
23929 |
25311 |
+ |
Gypsy22-ZM_I-int |
LTR/Gypsy |
| scaffold5061 |
25677 |
25720 |
+ |
(TTTTT)n |
Simple_repeat |
| scaffold5061 |
25935 |
25974 |
+ |
(ATAGTTAT)n |
Simple_repeat |
| scaffold5061 |
26144 |
26177 |
+ |
(GTT)n |
Simple_repeat |
| scaffold5061 |
26342 |
26490 |
+ |
RS5222 |
Unspecified |
| scaffold5061 |
26566 |
26604 |
+ |
A-rich |
Low_complexity |
| scaffold5061 |
26750 |
26856 |
- |
RS8401 |
Unspecified |
| scaffold5061 |
26856 |
26894 |
+ |
(ATAATT)n |
Simple_repeat |
| scaffold5061 |
27297 |
27324 |
+ |
(TA)n |
Simple_repeat |
| scaffold5061 |
27981 |
28064 |
+ |
(TA)n |
Simple_repeat |
| scaffold5061 |
28461 |
28536 |
+ |
(ATA)n |
Simple_repeat |
| scaffold5061 |
28651 |
28724 |
+ |
A-rich |
Low_complexity |
| scaffold5061 |
29571 |
29622 |
+ |
RETROSAT5_I-int |
LTR/Gypsy |
| scaffold5061 |
29571 |
29778 |
+ |
RETROSAT5_I-int |
LTR/Gypsy |
| scaffold5061 |
29608 |
29778 |
+ |
RS10907 |
Unspecified |
| scaffold5061 |
30017 |
30124 |
- |
RS8401 |
Unspecified |
| scaffold5061 |
30043 |
30180 |
- |
RS7547 |
Unspecified |
| scaffold5061 |
30122 |
30945 |
+ |
RS2048 |
Unspecified |
| scaffold5061 |
32927 |
32971 |
+ |
A-rich |
Low_complexity |
| scaffold5061 |
33743 |
33873 |
+ |
SHACOP15_LTR_MT |
LTR/Copia |
| scaffold5061 |
34009 |
34274 |
- |
Gypsy18-PTR_I-int |
LTR/Gypsy |
| scaffold5061 |
34768 |
34918 |
+ |
(AACA)n |
Simple_repeat |
| scaffold5061 |
34768 |
34849 |
+ |
(AACA)n |
Simple_repeat |
| scaffold5061 |
34829 |
34918 |
+ |
RS101 |
Unspecified |
| scaffold5061 |
34859 |
35014 |
- |
RS11629 |
Unspecified |
| scaffold5061 |
34876 |
35043 |
- |
RS785 |
Unspecified |
| scaffold5061 |
37126 |
37147 |
+ |
(G)n |
Simple_repeat |
| scaffold5061 |
41118 |
41137 |
+ |
(T)n |
Simple_repeat |
| scaffold5061 |
41249 |
41301 |
+ |
(AATAA)n |
Simple_repeat |
| scaffold5061 |
42024 |
42117 |
+ |
(CAACAAT)n |
Simple_repeat |
| scaffold5061 |
42162 |
42704 |
+ |
gypsy |
gypsy(TransposonPSI) |
| scaffold5061 |
42192 |
42689 |
+ |
Gypsy-5_Pru-I |
LTR/Gypsy |
| scaffold5061 |
42692 |
42913 |
+ |
RS1460 |
Unspecified |
| scaffold5061 |
43102 |
43241 |
+ |
RS1460 |
Unspecified |
| scaffold5061 |
44442 |
44532 |
- |
Copia-83_PT-LTR |
LTR/Copia |
| scaffold5061 |
44859 |
45741 |
- |
RS90 |
Unspecified |
| scaffold5061 |
45565 |
45880 |
+ |
RS2985 |
Unspecified |
| scaffold5061 |
45865 |
46332 |
+ |
RS6404 |
Unspecified |
| scaffold5061 |
47756 |
47846 |
- |
Copia-83_PT-LTR |
LTR/Copia |
| scaffold5061 |
48975 |
49051 |
+ |
(TTGAAT)n |
Simple_repeat |
| scaffold5061 |
49984 |
50187 |
+ |
RS12812 |
Unspecified |
| scaffold5061 |
51547 |
51757 |
- |
RS90 |
Unspecified |
| scaffold5061 |
54690 |
55448 |
+ |
TY1_Copia |
TY1_Copia(TransposonPSI) |
| scaffold5061 |
54690 |
55546 |
+ |
TY1_Copia |
TY1_Copia(TransposonPSI) |
| scaffold5061 |
54800 |
55379 |
+ |
Copia25-PTR_I-int |
LTR/Copia |
| scaffold5061 |
55404 |
55546 |
+ |
RS1460 |
Unspecified |
| scaffold5061 |
55551 |
55619 |
+ |
Gypsy-6_CP-I |
LTR/Gypsy |
| scaffold5061 |
55780 |
56058 |
+ |
RS1729 |
Unspecified |
| scaffold5061 |
55958 |
56316 |
+ |
RS16270 |
Unspecified |
| scaffold5061 |
56054 |
56482 |
- |
RS405 |
Unspecified |
| scaffold5061 |
56485 |
56538 |
- |
PL70 |
Unspecified |
| scaffold5061 |
56598 |
56880 |
+ |
LTR-1_SBi-LTR |
LTR |
| scaffold5061 |
57164 |
57216 |
+ |
Gypsy-6_CP-I |
LTR/Gypsy |
| scaffold5061 |
58347 |
58378 |
+ |
(ATAACA)n |
Simple_repeat |
| scaffold5061 |
59167 |
59226 |
- |
OPHELIA3_HV |
LTR/Gypsy |
| scaffold5061 |
59844 |
59907 |
+ |
(TTTTTTC)n |
Simple_repeat |
| scaffold5061 |
60611 |
60703 |
- |
PIGY-I_PS |
LTR/Gypsy |
| scaffold5061 |
60888 |
60960 |
+ |
(CAT)n |
Simple_repeat |
| scaffold5061 |
61147 |
61772 |
- |
PIGY-I_PS |
LTR/Gypsy |
| scaffold5061 |
61969 |
62621 |
+ |
RS661 |
Unspecified |
| scaffold5061 |
62069 |
62716 |
+ |
RS1207 |
Unspecified |
| scaffold5061 |
62948 |
63135 |
- |
PIGY-LTR_PS |
LTR/Gypsy |
| scaffold5061 |
63179 |
63237 |
- |
Gypsy-21_VV-I |
LTR/Gypsy |
| scaffold5061 |
63747 |
63777 |
- |
Gypsy-16_Mad-I |
LTR/Gypsy |
| scaffold5061 |
64334 |
64369 |
+ |
(ACAATA)n |
Simple_repeat |
| scaffold5061 |
65366 |
65440 |
+ |
PL530 |
Unspecified |
| scaffold5061 |
65948 |
66077 |
+ |
COPI2_LTR |
LTR/Copia |