scaffold5223 Repeat List
| genome |
start |
end |
strand |
repeat-name |
repeat-class |
| scaffold5223 |
1 |
1186 |
+ |
Gypsy-I_MT |
LTR/Gypsy |
| scaffold5223 |
1170 |
1367 |
+ |
Gypsy-I_MT |
LTR/Gypsy |
| scaffold5223 |
1835 |
2886 |
+ |
Gypsy-I_MT |
LTR/Gypsy |
| scaffold5223 |
2957 |
3036 |
- |
PL888 |
Unspecified |
| scaffold5223 |
4269 |
4475 |
- |
RS319 |
Unspecified |
| scaffold5223 |
4493 |
4641 |
- |
RS319 |
Unspecified |
| scaffold5223 |
4515 |
4617 |
- |
RS319 |
Unspecified |
| scaffold5223 |
4588 |
4736 |
- |
RS1527 |
Unspecified |
| scaffold5223 |
4612 |
4751 |
- |
RS319 |
Unspecified |
| scaffold5223 |
4695 |
4842 |
- |
RS1527 |
Unspecified |
| scaffold5223 |
4725 |
4902 |
- |
RS319 |
Unspecified |
| scaffold5223 |
4848 |
4998 |
- |
RS1527 |
Unspecified |
| scaffold5223 |
4873 |
5038 |
- |
RS319 |
Unspecified |
| scaffold5223 |
4974 |
5053 |
- |
RS1527 |
Unspecified |
| scaffold5223 |
5076 |
5113 |
- |
RS319 |
Unspecified |
| scaffold5223 |
5079 |
5126 |
- |
RS458 |
Unspecified |
| scaffold5223 |
5365 |
5460 |
+ |
(AATTAT)n |
Simple_repeat |
| scaffold5223 |
5578 |
5687 |
- |
RS458 |
Unspecified |
| scaffold5223 |
5942 |
5970 |
- |
RS319 |
Unspecified |
| scaffold5223 |
6355 |
6393 |
+ |
(CCA)n |
Simple_repeat |
| scaffold5223 |
6610 |
6733 |
+ |
RS5600 |
Unspecified |
| scaffold5223 |
7354 |
7403 |
+ |
G-rich |
Low_complexity |
| scaffold5223 |
7688 |
8128 |
- |
RS1947 |
Unspecified |
| scaffold5223 |
7889 |
8670 |
- |
RS1236 |
Unspecified |
| scaffold5223 |
13255 |
13304 |
+ |
G-rich |
Low_complexity |
| scaffold5223 |
13636 |
13881 |
+ |
RS4 |
Unspecified |
| scaffold5223 |
14480 |
14513 |
+ |
A-rich |
Low_complexity |
| scaffold5223 |
14578 |
14622 |
+ |
(TCTTC)n |
Simple_repeat |
| scaffold5223 |
14651 |
14680 |
+ |
(T)n |
Simple_repeat |
| scaffold5223 |
15106 |
15224 |
- |
SINE2-2_STu |
SINE/tRNA |
| scaffold5223 |
22370 |
22514 |
+ |
RS5939 |
Unspecified |
| scaffold5223 |
22516 |
22586 |
- |
RS126 |
Unspecified |
| scaffold5223 |
22579 |
22785 |
+ |
PL6 |
Unspecified |
| scaffold5223 |
24054 |
24172 |
- |
RS126 |
Unspecified |
| scaffold5223 |
24199 |
24282 |
+ |
(CTGAA)n |
Simple_repeat |
| scaffold5223 |
24300 |
24370 |
+ |
(AACTG)n |
Simple_repeat |
| scaffold5223 |
24489 |
24516 |
+ |
(T)n |
Simple_repeat |
| scaffold5223 |
24717 |
24760 |
- |
Copia-24_Mad-I |
LTR/Copia |
| scaffold5223 |
25625 |
25664 |
+ |
Alfare1_I-int |
LTR/Copia? |
| scaffold5223 |
26149 |
26173 |
+ |
(TTA)n |
Simple_repeat |
| scaffold5223 |
26598 |
26647 |
+ |
(TTA)n |
Simple_repeat |
| scaffold5223 |
26648 |
26691 |
+ |
(T)n |
Simple_repeat |
| scaffold5223 |
26705 |
26754 |
+ |
(AACTG)n |
Simple_repeat |
| scaffold5223 |
28140 |
28589 |
- |
LINE |
LINE(TransposonPSI) |
| scaffold5223 |
29512 |
29557 |
+ |
Copia-1_BD-I |
LTR/Copia |
| scaffold5223 |
29674 |
29745 |
+ |
(TTGTTC)n |
Simple_repeat |
| scaffold5223 |
29866 |
29915 |
+ |
A-rich |
Low_complexity |
| scaffold5223 |
31401 |
31428 |
+ |
(AAACC)n |
Simple_repeat |
| scaffold5223 |
31432 |
31483 |
+ |
(TGA)n |
Simple_repeat |
| scaffold5223 |
31787 |
31845 |
+ |
(ATT)n |
Simple_repeat |
| scaffold5223 |
31897 |
31956 |
+ |
(ATG)n |
Simple_repeat |
| scaffold5223 |
31996 |
32154 |
+ |
(TAT)n |
Simple_repeat |
| scaffold5223 |
32592 |
32613 |
+ |
(A)n |
Simple_repeat |
| scaffold5223 |
32659 |
32902 |
+ |
(AACTG)n |
Simple_repeat |
| scaffold5223 |
34697 |
34734 |
+ |
A-rich |
Low_complexity |
| scaffold5223 |
34893 |
34917 |
+ |
(A)n |
Simple_repeat |
| scaffold5223 |
37308 |
37371 |
+ |
(ATAATAA)n |
Simple_repeat |
| scaffold5223 |
37982 |
38018 |
+ |
(TTATAA)n |
Simple_repeat |
| scaffold5223 |
38239 |
38279 |
+ |
(ATACATA)n |
Simple_repeat |