scaffold5398 Repeat List
| genome |
start |
end |
strand |
repeat-name |
repeat-class |
| scaffold5398 |
745 |
852 |
+ |
PIGY-LTR_PS |
LTR/Gypsy |
| scaffold5398 |
3323 |
3892 |
+ |
ATHILA-5_SBi-I |
LTR/Gypsy |
| scaffold5398 |
4618 |
4649 |
+ |
(GCCG)n |
Simple_repeat |
| scaffold5398 |
4935 |
5254 |
+ |
RS78 |
Unspecified |
| scaffold5398 |
5474 |
5519 |
+ |
(TTGGTTG)n |
Simple_repeat |
| scaffold5398 |
5709 |
5763 |
+ |
A-rich |
Low_complexity |
| scaffold5398 |
6328 |
6382 |
+ |
A-rich |
Low_complexity |
| scaffold5398 |
6616 |
6660 |
+ |
MEGY-I_MT |
LTR/Gypsy |
| scaffold5398 |
9018 |
9154 |
+ |
RS2452 |
Unspecified |
| scaffold5398 |
9330 |
9366 |
+ |
(TATTTT)n |
Simple_repeat |
| scaffold5398 |
10086 |
10484 |
- |
RS265 |
Unspecified |
| scaffold5398 |
10486 |
10712 |
- |
RS549 |
Unspecified |
| scaffold5398 |
10710 |
11737 |
- |
RS265 |
Unspecified |
| scaffold5398 |
11725 |
12377 |
- |
RS1216 |
Unspecified |
| scaffold5398 |
12186 |
12676 |
- |
RS4105 |
Unspecified |
| scaffold5398 |
12776 |
12829 |
+ |
(TTCATT)n |
Simple_repeat |
| scaffold5398 |
12860 |
13112 |
- |
RS265 |
Unspecified |
| scaffold5398 |
13115 |
13239 |
+ |
RS2145 |
Unspecified |
| scaffold5398 |
13986 |
14031 |
+ |
(A)n |
Simple_repeat |
| scaffold5398 |
14258 |
14287 |
+ |
(A)n |
Simple_repeat |
| scaffold5398 |
16145 |
16346 |
- |
RS28 |
Unspecified |
| scaffold5398 |
17951 |
18029 |
+ |
(CTGAA)n |
Simple_repeat |
| scaffold5398 |
18073 |
18299 |
+ |
(TTCAG)n |
Simple_repeat |
| scaffold5398 |
18337 |
18462 |
+ |
(AGCTG)n |
Simple_repeat |
| scaffold5398 |
19093 |
19111 |
+ |
(T)n |
Simple_repeat |
| scaffold5398 |
19217 |
19245 |
+ |
(ATATT)n |
Simple_repeat |
| scaffold5398 |
19562 |
19659 |
+ |
(T)n |
Simple_repeat |
| scaffold5398 |
20070 |
20123 |
+ |
A-rich |
Low_complexity |
| scaffold5398 |
20428 |
20463 |
+ |
(ACTTTAA)n |
Simple_repeat |
| scaffold5398 |
23749 |
24543 |
+ |
TY1_Copia |
TY1_Copia(TransposonPSI) |
| scaffold5398 |
23909 |
24218 |
+ |
Copia-54_VV-I |
LTR/Copia |
| scaffold5398 |
25223 |
25253 |
+ |
(TTATTT)n |
Simple_repeat |
| scaffold5398 |
25595 |
26395 |
- |
RS645 |
Unspecified |
| scaffold5398 |
30317 |
30476 |
+ |
PL367 |
Unspecified |
| scaffold5398 |
30485 |
31642 |
+ |
COP12_I_MT-int |
LTR/Copia |
| scaffold5398 |
32186 |
32247 |
+ |
A-rich |
Low_complexity |
| scaffold5398 |
32592 |
32610 |
+ |
(T)n |
Simple_repeat |
| scaffold5398 |
32650 |
33515 |
- |
RS77 |
Unspecified |
| scaffold5398 |
36097 |
36169 |
+ |
(TGTA)n |
Simple_repeat |
| scaffold5398 |
36198 |
36232 |
+ |
(TGTA)n |
Simple_repeat |
| scaffold5398 |
36699 |
36774 |
- |
Atlantys1_I-int |
LTR/Gypsy |
| scaffold5398 |
36948 |
37749 |
- |
Atlantys1_I-int |
LTR/Gypsy |
| scaffold5398 |
38048 |
39876 |
- |
Atlantys1_I-int |
LTR/Gypsy |
| scaffold5398 |
40081 |
40182 |
- |
Atlantys1_I-int |
LTR/Gypsy |
| scaffold5398 |
41850 |
42775 |
- |
RS77 |
Unspecified |
| scaffold5398 |
42794 |
42871 |
+ |
RS2212 |
Unspecified |
| scaffold5398 |
43122 |
43795 |
- |
RS12375 |
Unspecified |
| scaffold5398 |
44014 |
44058 |
+ |
A-rich |
Low_complexity |
| scaffold5398 |
44799 |
44837 |
+ |
(ATTC)n |
Simple_repeat |
| scaffold5398 |
46292 |
46487 |
+ |
RS761 |
Unspecified |
| scaffold5398 |
46292 |
46537 |
- |
RS3649 |
Unspecified |
| scaffold5398 |
46663 |
46727 |
+ |
(TTTGT)n |
Simple_repeat |
| scaffold5398 |
50573 |
50596 |
+ |
(T)n |
Simple_repeat |
| scaffold5398 |
51672 |
51716 |
+ |
(ATTAAC)n |
Simple_repeat |
| scaffold5398 |
53704 |
53829 |
+ |
PL459 |
Unspecified |
| scaffold5398 |
53861 |
54010 |
+ |
RS4847 |
Unspecified |
| scaffold5398 |
54171 |
54827 |
+ |
RS4301 |
Unspecified |
| scaffold5398 |
55055 |
55325 |
+ |
RS6760 |
Unspecified |
| scaffold5398 |
55507 |
55709 |
- |
RS11865 |
Unspecified |
| scaffold5398 |
56101 |
56307 |
+ |
RS14363 |
Unspecified |
| scaffold5398 |
56318 |
56339 |
+ |
(A)n |
Simple_repeat |
| scaffold5398 |
56318 |
56505 |
+ |
(A)n |
Simple_repeat |
| scaffold5398 |
56332 |
56505 |
+ |
RS9919 |
Unspecified |
| scaffold5398 |
56539 |
56775 |
+ |
RS5152 |
Unspecified |
| scaffold5398 |
56612 |
56845 |
- |
RS9192 |
Unspecified |
| scaffold5398 |
56846 |
57299 |
+ |
RS2105 |
Unspecified |
| scaffold5398 |
57300 |
57622 |
- |
Copia-89_VV-I |
LTR/Copia |
| scaffold5398 |
57623 |
57658 |
+ |
(AAACTTT)n |
Simple_repeat |
| scaffold5398 |
57659 |
58303 |
- |
Copia-89_VV-I |
LTR/Copia |
| scaffold5398 |
58275 |
58541 |
- |
Copia-89_VV-I |
LTR/Copia |
| scaffold5398 |
58528 |
59222 |
- |
Copia-89_VV-I |
LTR/Copia |
| scaffold5398 |
59615 |
59637 |
+ |
(GGCC)n |
Simple_repeat |
| scaffold5398 |
60542 |
61078 |
+ |
PL880 |
Unspecified |
| scaffold5398 |
61897 |
62354 |
+ |
RS1633 |
Unspecified |
| scaffold5398 |
62221 |
62455 |
+ |
RS6781 |
Unspecified |
| scaffold5398 |
62458 |
62941 |
+ |
MEGY-I_MT |
LTR/Gypsy |
| scaffold5398 |
63419 |
63452 |
+ |
(TTGCAT)n |
Simple_repeat |
| scaffold5398 |
63677 |
63712 |
+ |
(GCCG)n |
Simple_repeat |
| scaffold5398 |
64565 |
64615 |
+ |
A-rich |
Low_complexity |
| scaffold5398 |
64853 |
64902 |
+ |
MEGY-I_MT |
LTR/Gypsy |
| scaffold5398 |
65251 |
65273 |
+ |
(GGCC)n |
Simple_repeat |
| scaffold5398 |
66178 |
66547 |
+ |
PL880 |
Unspecified |
| scaffold5398 |
66615 |
66667 |
+ |
(ATCTTT)n |
Simple_repeat |
| scaffold5398 |
66865 |
69468 |
- |
Copia-89_VV-I |
LTR/Copia |
| scaffold5398 |
70079 |
70125 |
+ |
RS2105 |
Unspecified |
| scaffold5398 |
70139 |
70370 |
- |
RS267 |
Unspecified |
| scaffold5398 |
70218 |
70400 |
- |
RS1186 |
Unspecified |
| scaffold5398 |
70283 |
70422 |
+ |
RS9432 |
Unspecified |
| scaffold5398 |
70355 |
70443 |
+ |
RS2463 |
Unspecified |
| scaffold5398 |
70449 |
70590 |
+ |
RS9432 |
Unspecified |
| scaffold5398 |
71212 |
71239 |
+ |
(A)n |
Simple_repeat |
| scaffold5398 |
71360 |
71578 |
- |
RS267 |
Unspecified |
| scaffold5398 |
71776 |
71981 |
- |
RS11096 |
Unspecified |
| scaffold5398 |
71951 |
72029 |
- |
RS848 |
Unspecified |
| scaffold5398 |
72020 |
72225 |
+ |
RS14363 |
Unspecified |
| scaffold5398 |
72237 |
72410 |
+ |
RS9919 |
Unspecified |
| scaffold5398 |
72425 |
72680 |
+ |
(CAA)n |
Simple_repeat |
| scaffold5398 |
72425 |
72463 |
+ |
(CAA)n |
Simple_repeat |
| scaffold5398 |
72445 |
72680 |
+ |
RS5152 |
Unspecified |
| scaffold5398 |
72518 |
72849 |
- |
RS9192 |
Unspecified |
| scaffold5398 |
73370 |
73508 |
+ |
RS2888 |
Unspecified |
| scaffold5398 |
73431 |
73636 |
- |
RS6511 |
Unspecified |
| scaffold5398 |
73640 |
73940 |
- |
RS3657 |
Unspecified |
| scaffold5398 |
73965 |
74062 |
- |
RS4383 |
Unspecified |
| scaffold5398 |
74356 |
74542 |
- |
RS4383 |
Unspecified |
| scaffold5398 |
74471 |
74573 |
- |
RS3996 |
Unspecified |
| scaffold5398 |
74621 |
74765 |
+ |
RS11615 |
Unspecified |
| scaffold5398 |
74767 |
74941 |
+ |
RS3294 |
Unspecified |
| scaffold5398 |
75082 |
75178 |
+ |
RS3294 |
Unspecified |