scaffold5430 Repeat List
| genome |
start |
end |
strand |
repeat-name |
repeat-class |
| scaffold5430 |
1 |
96 |
- |
RS215 |
Unspecified |
| scaffold5430 |
152 |
270 |
+ |
Copia-3_PTri-I |
LTR/Copia |
| scaffold5430 |
388 |
450 |
+ |
(AATTCA)n |
Simple_repeat |
| scaffold5430 |
802 |
826 |
+ |
(ATTTT)n |
Simple_repeat |
| scaffold5430 |
1065 |
1092 |
+ |
(A)n |
Simple_repeat |
| scaffold5430 |
1065 |
1318 |
+ |
(A)n |
Simple_repeat |
| scaffold5430 |
1080 |
1318 |
+ |
PL774 |
Unspecified |
| scaffold5430 |
1227 |
1330 |
+ |
RS15534 |
Unspecified |
| scaffold5430 |
1983 |
2010 |
+ |
A-rich |
Low_complexity |
| scaffold5430 |
2156 |
2271 |
- |
RS972 |
Unspecified |
| scaffold5430 |
2924 |
2983 |
+ |
(AT)n |
Simple_repeat |
| scaffold5430 |
3118 |
3188 |
+ |
(TTAATAC)n |
Simple_repeat |
| scaffold5430 |
3605 |
3610 |
+ |
(CTCATT)n |
Simple_repeat |
| scaffold5430 |
3611 |
3662 |
+ |
(TCA)n |
Simple_repeat |
| scaffold5430 |
3663 |
3675 |
+ |
(CTCATT)n |
Simple_repeat |
| scaffold5430 |
3776 |
3800 |
+ |
(TTC)n |
Simple_repeat |
| scaffold5430 |
4966 |
5057 |
- |
RS4475 |
Unspecified |
| scaffold5430 |
5268 |
5314 |
+ |
(AATTTA)n |
Simple_repeat |
| scaffold5430 |
6426 |
6476 |
+ |
Copia-6_CP-I |
LTR/Copia |
| scaffold5430 |
7737 |
7913 |
- |
RS5 |
Unspecified |
| scaffold5430 |
8025 |
8046 |
+ |
(T)n |
Simple_repeat |
| scaffold5430 |
8301 |
8436 |
- |
RS13717 |
Unspecified |
| scaffold5430 |
8523 |
8549 |
+ |
(T)n |
Simple_repeat |
| scaffold5430 |
8560 |
8622 |
+ |
(ATT)n |
Simple_repeat |
| scaffold5430 |
8831 |
8847 |
+ |
(A)n |
Simple_repeat |
| scaffold5430 |
9184 |
9250 |
+ |
(AATGAA)n |
Simple_repeat |
| scaffold5430 |
9247 |
9413 |
- |
RS5964 |
Unspecified |
| scaffold5430 |
9290 |
9439 |
- |
RS2553 |
Unspecified |
| scaffold5430 |
9936 |
10118 |
+ |
RS79 |
Unspecified |
| scaffold5430 |
10307 |
10552 |
+ |
RS16888 |
Unspecified |
| scaffold5430 |
10915 |
10984 |
+ |
(ATTTAA)n |
Simple_repeat |
| scaffold5430 |
11176 |
11194 |
+ |
(A)n |
Simple_repeat |
| scaffold5430 |
11206 |
11254 |
+ |
(CACCA)n |
Simple_repeat |
| scaffold5430 |
11255 |
11299 |
+ |
(ACC)n |
Simple_repeat |
| scaffold5430 |
13952 |
14232 |
+ |
RS17600 |
Unspecified |
| scaffold5430 |
14683 |
14943 |
+ |
RS365 |
Unspecified |
| scaffold5430 |
14958 |
14991 |
+ |
(AAAATT)n |
Simple_repeat |
| scaffold5430 |
15128 |
15186 |
+ |
(TATTAA)n |
Simple_repeat |
| scaffold5430 |
15323 |
15480 |
+ |
RS79 |
Unspecified |
| scaffold5430 |
15457 |
15570 |
+ |
RS3756 |
Unspecified |
| scaffold5430 |
15481 |
15577 |
+ |
RS79 |
Unspecified |
| scaffold5430 |
15882 |
15931 |
+ |
RS17600 |
Unspecified |
| scaffold5430 |
15898 |
16161 |
- |
RS17600 |
Unspecified |
| scaffold5430 |
16604 |
16633 |
+ |
(T)n |
Simple_repeat |
| scaffold5430 |
16653 |
16725 |
+ |
A-rich |
Low_complexity |
| scaffold5430 |
16807 |
16856 |
+ |
(ATGAG)n |
Simple_repeat |
| scaffold5430 |
16872 |
16928 |
+ |
A-rich |
Low_complexity |
| scaffold5430 |
17150 |
17172 |
+ |
(T)n |
Simple_repeat |
| scaffold5430 |
17307 |
17344 |
+ |
(TATCG)n |
Simple_repeat |
| scaffold5430 |
17908 |
18045 |
+ |
RS38 |
Unspecified |
| scaffold5430 |
18718 |
18809 |
- |
RS14237 |
Unspecified |
| scaffold5430 |
18745 |
18825 |
- |
PL517 |
Unspecified |
| scaffold5430 |
20327 |
20403 |
+ |
RS17 |
Unspecified |
| scaffold5430 |
22811 |
22840 |
+ |
(A)n |
Simple_repeat |
| scaffold5430 |
23053 |
23105 |
+ |
Copia-3_PTri-I |
LTR/Copia |
| scaffold5430 |
23106 |
23286 |
+ |
Copia-3_PTri-I |
LTR/Copia |
| scaffold5430 |
23286 |
23349 |
+ |
RS16604 |
Unspecified |
| scaffold5430 |
23983 |
24071 |
+ |
(TTTCTT)n |
Simple_repeat |
| scaffold5430 |
24072 |
24094 |
+ |
(T)n |
Simple_repeat |
| scaffold5430 |
24283 |
24337 |
+ |
(TAA)n |
Simple_repeat |
| scaffold5430 |
24897 |
24921 |
+ |
(AGAA)n |
Simple_repeat |
| scaffold5430 |
25371 |
25751 |
- |
RS561 |
Unspecified |
| scaffold5430 |
25800 |
25931 |
+ |
Copia-2_SL-I |
LTR/Copia |
| scaffold5430 |
26005 |
27928 |
+ |
Copia-2_SL-I |
LTR/Copia |
| scaffold5430 |
26559 |
26634 |
- |
Gypsy-12_TA-LTR |
LTR/Gypsy |
| scaffold5430 |
28229 |
29813 |
+ |
Copia-2_SL-I |
LTR/Copia |
| scaffold5430 |
30084 |
30464 |
- |
RS561 |
Unspecified |
| scaffold5430 |
30714 |
30921 |
+ |
RS2999 |
Unspecified |
| scaffold5430 |
30935 |
31036 |
+ |
RS15113 |
Unspecified |
| scaffold5430 |
31242 |
31930 |
- |
PL698 |
Unspecified |
| scaffold5430 |
31945 |
32328 |
+ |
PL436 |
Unspecified |
| scaffold5430 |
32439 |
32460 |
+ |
(A)n |
Simple_repeat |
| scaffold5430 |
33620 |
33725 |
+ |
RS138 |
Unspecified |
| scaffold5430 |
37934 |
37982 |
+ |
A-rich |
Low_complexity |
| scaffold5430 |
38956 |
39019 |
+ |
(ATTAA)n |
Simple_repeat |
| scaffold5430 |
39469 |
39509 |
+ |
A-rich |
Low_complexity |
| scaffold5430 |
39850 |
39983 |
+ |
RS1228 |
Unspecified |
| scaffold5430 |
40755 |
40788 |
+ |
(TTAATT)n |
Simple_repeat |
| scaffold5430 |
41056 |
41509 |
- |
PL352 |
Unspecified |
| scaffold5430 |
41715 |
41742 |
+ |
(ATC)n |
Simple_repeat |
| scaffold5430 |
41815 |
41864 |
+ |
(TTTCGG)n |
Simple_repeat |
| scaffold5430 |
46389 |
46597 |
- |
Copia-3_PTri-I |
LTR/Copia |
| scaffold5430 |
46598 |
46668 |
- |
Copia-3_PTri-I |
LTR/Copia |
| scaffold5430 |
46668 |
46700 |
- |
RS17 |
Unspecified |
| scaffold5430 |
47426 |
47476 |
+ |
A-rich |
Low_complexity |
| scaffold5430 |
47777 |
48011 |
+ |
RS145 |
Unspecified |
| scaffold5430 |
48031 |
48059 |
+ |
(TTCGGG)n |
Simple_repeat |
| scaffold5430 |
48568 |
48609 |
+ |
(TTTG)n |
Simple_repeat |
| scaffold5430 |
48735 |
48796 |
+ |
SINE2-1_PD |
SINE/tRNA-RTE |
| scaffold5430 |
48815 |
48891 |
+ |
Copia-3_PTri-I |
LTR/Copia |
| scaffold5430 |
50884 |
50925 |
+ |
A-rich |
Low_complexity |
| scaffold5430 |
54783 |
54807 |
+ |
(T)n |
Simple_repeat |
| scaffold5430 |
54853 |
54888 |
+ |
(A)n |
Simple_repeat |
| scaffold5430 |
55317 |
55351 |
+ |
(TTTCAA)n |
Simple_repeat |
| scaffold5430 |
57105 |
57436 |
- |
RS318 |
Unspecified |
| scaffold5430 |
59552 |
59569 |
+ |
(T)n |
Simple_repeat |
| scaffold5430 |
60972 |
61048 |
- |
RS148 |
Unspecified |
| scaffold5430 |
61313 |
61403 |
+ |
LTR-7_Mad-LTR |
LTR |
| scaffold5430 |
61876 |
61981 |
+ |
RS73 |
Unspecified |
| scaffold5430 |
61975 |
62108 |
- |
PL753 |
Unspecified |
| scaffold5430 |
63249 |
63284 |
+ |
(ATATTA)n |
Simple_repeat |
| scaffold5430 |
63295 |
63369 |
- |
Copia1_ZM_I-int |
LTR/Copia |
| scaffold5430 |
63400 |
63433 |
+ |
(TTCATC)n |
Simple_repeat |
| scaffold5430 |
63527 |
63688 |
+ |
RS9061 |
Unspecified |
| scaffold5430 |
63697 |
63869 |
- |
RS17860 |
Unspecified |
| scaffold5430 |
64064 |
64082 |
+ |
(ATT)n |
Simple_repeat |
| scaffold5430 |
64173 |
64194 |
+ |
(T)n |
Simple_repeat |
| scaffold5430 |
64281 |
64311 |
- |
Copia-32_BD-I |
LTR/Copia |
| scaffold5430 |
64430 |
64460 |
+ |
(TTAATA)n |
Simple_repeat |
| scaffold5430 |
64871 |
65250 |
+ |
RS322 |
Unspecified |
| scaffold5430 |
65302 |
65524 |
- |
RS16888 |
Unspecified |
| scaffold5430 |
65598 |
65845 |
- |
RS458 |
Unspecified |
| scaffold5430 |
65981 |
66603 |
- |
RS10778 |
Unspecified |
| scaffold5430 |
66779 |
66824 |
+ |
(AAT)n |
Simple_repeat |
| scaffold5430 |
66938 |
67451 |
+ |
RS248 |
Unspecified |
| scaffold5430 |
67516 |
67651 |
+ |
RS377 |
Unspecified |
| scaffold5430 |
67924 |
68140 |
- |
RS10518 |
Unspecified |
| scaffold5430 |
68178 |
68297 |
+ |
(TTTTATT)n |
Simple_repeat |
| scaffold5430 |
68379 |
68673 |
+ |
RS468 |
Unspecified |
| scaffold5430 |
68918 |
68935 |
+ |
(T)n |
Simple_repeat |
| scaffold5430 |
68983 |
69083 |
+ |
RS2367 |
Unspecified |