scaffold5438 Repeat List
| genome |
start |
end |
strand |
repeat-name |
repeat-class |
| scaffold5438 |
1 |
59 |
- |
PL753 |
Unspecified |
| scaffold5438 |
251 |
521 |
+ |
RS507 |
Unspecified |
| scaffold5438 |
554 |
594 |
+ |
(TTT)n |
Simple_repeat |
| scaffold5438 |
993 |
1102 |
+ |
PL803 |
Unspecified |
| scaffold5438 |
3322 |
3359 |
+ |
A-rich |
Low_complexity |
| scaffold5438 |
3451 |
3545 |
- |
RS9066 |
Unspecified |
| scaffold5438 |
3464 |
3543 |
- |
RS445 |
Unspecified |
| scaffold5438 |
3921 |
3954 |
+ |
(TTTTAA)n |
Simple_repeat |
| scaffold5438 |
3986 |
4061 |
+ |
(TAATT)n |
Simple_repeat |
| scaffold5438 |
4438 |
4529 |
- |
PL276 |
Unspecified |
| scaffold5438 |
5169 |
5207 |
+ |
(A)n |
Simple_repeat |
| scaffold5438 |
5940 |
6226 |
+ |
(CCCGA)n |
Simple_repeat |
| scaffold5438 |
7185 |
7413 |
- |
HAT-9_Mad |
DNA/hAT-Ac |
| scaffold5438 |
10084 |
10156 |
+ |
GA-rich |
Low_complexity |
| scaffold5438 |
10664 |
11108 |
- |
RS879 |
Unspecified |
| scaffold5438 |
11164 |
11211 |
+ |
(T)n |
Simple_repeat |
| scaffold5438 |
12361 |
12387 |
+ |
(TTAAT)n |
Simple_repeat |
| scaffold5438 |
12916 |
12943 |
+ |
(ATT)n |
Simple_repeat |
| scaffold5438 |
12944 |
13017 |
+ |
(AATTC)n |
Simple_repeat |
| scaffold5438 |
13067 |
13122 |
+ |
A-rich |
Low_complexity |
| scaffold5438 |
13305 |
13447 |
+ |
CT-rich |
Low_complexity |
| scaffold5438 |
13448 |
13498 |
+ |
(T)n |
Simple_repeat |
| scaffold5438 |
13499 |
13531 |
+ |
polypyrimidine |
Low_complexity |
| scaffold5438 |
13769 |
13887 |
+ |
(TTC)n |
Simple_repeat |
| scaffold5438 |
14272 |
14436 |
+ |
RS1772 |
Unspecified |
| scaffold5438 |
14435 |
14488 |
+ |
(CACA)n |
Simple_repeat |
| scaffold5438 |
14733 |
16131 |
+ |
L1-14_Mad |
LINE/L1 |
| scaffold5438 |
16641 |
16742 |
+ |
RS14324 |
Unspecified |
| scaffold5438 |
16758 |
17013 |
+ |
RS15824 |
Unspecified |
| scaffold5438 |
17230 |
17347 |
+ |
RS17628 |
Unspecified |
| scaffold5438 |
19487 |
19524 |
+ |
(TTTAT)n |
Simple_repeat |
| scaffold5438 |
20076 |
20236 |
+ |
RS16610 |
Unspecified |
| scaffold5438 |
20695 |
20954 |
- |
LTR2-ZM_LTR |
LTR |
| scaffold5438 |
20720 |
20761 |
+ |
RS15360 |
Unspecified |
| scaffold5438 |
21263 |
21338 |
+ |
RS14324 |
Unspecified |
| scaffold5438 |
21597 |
21800 |
+ |
RS6545 |
Unspecified |
| scaffold5438 |
21810 |
21908 |
+ |
RS15360 |
Unspecified |
| scaffold5438 |
21940 |
22143 |
+ |
RS6545 |
Unspecified |
| scaffold5438 |
22153 |
22272 |
+ |
RS15360 |
Unspecified |
| scaffold5438 |
22422 |
22530 |
+ |
RS14324 |
Unspecified |
| scaffold5438 |
22546 |
22763 |
+ |
RS15824 |
Unspecified |
| scaffold5438 |
22970 |
23094 |
+ |
RS17628 |
Unspecified |
| scaffold5438 |
23124 |
23226 |
+ |
RS14926 |
Unspecified |
| scaffold5438 |
24354 |
24380 |
+ |
(GTTAC)n |
Simple_repeat |
| scaffold5438 |
24895 |
25159 |
+ |
RS10 |
Unspecified |
| scaffold5438 |
25362 |
25445 |
+ |
(TTTTATT)n |
Simple_repeat |
| scaffold5438 |
25780 |
25822 |
+ |
(ATTAA)n |
Simple_repeat |
| scaffold5438 |
26920 |
26949 |
+ |
(AATCT)n |
Simple_repeat |
| scaffold5438 |
27047 |
27142 |
+ |
PL171 |
Unspecified |
| scaffold5438 |
29075 |
29101 |
+ |
(CTG)n |
Simple_repeat |
| scaffold5438 |
29242 |
29309 |
+ |
GA-rich |
Low_complexity |
| scaffold5438 |
29940 |
29985 |
+ |
(AATTAT)n |
Simple_repeat |
| scaffold5438 |
32044 |
32062 |
+ |
(T)n |
Simple_repeat |
| scaffold5438 |
32780 |
32810 |
+ |
A-rich |
Low_complexity |
| scaffold5438 |
33998 |
34186 |
- |
RS994 |
Unspecified |
| scaffold5438 |
34159 |
34395 |
+ |
PL390 |
Unspecified |
| scaffold5438 |
34963 |
34997 |
+ |
(ATTA)n |
Simple_repeat |
| scaffold5438 |
35537 |
35818 |
- |
RS600 |
Unspecified |
| scaffold5438 |
35849 |
35882 |
+ |
(TTTGTA)n |
Simple_repeat |
| scaffold5438 |
36049 |
36576 |
- |
RS1309 |
Unspecified |
| scaffold5438 |
36753 |
36833 |
- |
RS1975 |
Unspecified |
| scaffold5438 |
36849 |
36929 |
- |
RS1975 |
Unspecified |
| scaffold5438 |
36948 |
38077 |
- |
RS940 |
Unspecified |
| scaffold5438 |
38112 |
38602 |
- |
RS2850 |
Unspecified |
| scaffold5438 |
38227 |
39071 |
+ |
RS1581 |
Unspecified |
| scaffold5438 |
39278 |
39301 |
+ |
(T)n |
Simple_repeat |
| scaffold5438 |
40236 |
40366 |
+ |
RS9351 |
Unspecified |
| scaffold5438 |
40643 |
40876 |
- |
RS2504 |
Unspecified |
| scaffold5438 |
41014 |
41054 |
+ |
(T)n |
Simple_repeat |
| scaffold5438 |
41215 |
41296 |
+ |
A-rich |
Low_complexity |
| scaffold5438 |
42157 |
42206 |
+ |
(TAAT)n |
Simple_repeat |
| scaffold5438 |
42310 |
42378 |
+ |
(TTAAT)n |
Simple_repeat |
| scaffold5438 |
42912 |
42971 |
- |
CACTA_LP |
DNA/CMC-EnSpm |
| scaffold5438 |
42921 |
42962 |
+ |
MuDR-10_GM |
DNA/MULE-MuDR |
| scaffold5438 |
42963 |
42980 |
+ |
ATCopia24I |
LTR/Copia |
| scaffold5438 |
43222 |
43266 |
+ |
(TTTTATA)n |
Simple_repeat |
| scaffold5438 |
43278 |
43323 |
+ |
(TATAA)n |
Simple_repeat |
| scaffold5438 |
43962 |
43993 |
+ |
(T)n |
Simple_repeat |
| scaffold5438 |
44122 |
44145 |
+ |
(T)n |
Simple_repeat |
| scaffold5438 |
45286 |
45312 |
+ |
(T)n |
Simple_repeat |
| scaffold5438 |
45328 |
45365 |
+ |
A-rich |
Low_complexity |
| scaffold5438 |
46804 |
46826 |
+ |
(T)n |
Simple_repeat |
| scaffold5438 |
47299 |
47382 |
+ |
RS7234 |
Unspecified |
| scaffold5438 |
47364 |
47597 |
+ |
RS7234 |
Unspecified |
| scaffold5438 |
47382 |
47624 |
- |
RS102 |
Unspecified |
| scaffold5438 |
48475 |
48513 |
+ |
GA-rich |
Low_complexity |
| scaffold5438 |
48603 |
48710 |
- |
RS849 |
Unspecified |
| scaffold5438 |
48640 |
48753 |
- |
RS1967 |
Unspecified |
| scaffold5438 |
48891 |
48997 |
- |
RS562 |
Unspecified |
| scaffold5438 |
49686 |
49718 |
+ |
(TAA)n |
Simple_repeat |
| scaffold5438 |
50243 |
50278 |
+ |
(CCA)n |
Simple_repeat |
| scaffold5438 |
52182 |
52231 |
+ |
A-rich |
Low_complexity |
| scaffold5438 |
57136 |
57194 |
+ |
A-rich |
Low_complexity |
| scaffold5438 |
57289 |
57323 |
+ |
(A)n |
Simple_repeat |
| scaffold5438 |
57714 |
57757 |
+ |
A-rich |
Low_complexity |
| scaffold5438 |
58632 |
58888 |
+ |
RS1 |
Unspecified |
| scaffold5438 |
60353 |
60436 |
+ |
(ATTATT)n |
Simple_repeat |
| scaffold5438 |
60470 |
60500 |
+ |
RS285 |
Unspecified |
| scaffold5438 |
60973 |
61070 |
+ |
RS750 |
Unspecified |
| scaffold5438 |
61948 |
62036 |
+ |
A-rich |
Low_complexity |
| scaffold5438 |
62395 |
62458 |
- |
Gypsy-125_SBi-I |
LTR/Gypsy |
| scaffold5438 |
63099 |
63799 |
- |
RS1051 |
Unspecified |
| scaffold5438 |
65059 |
65518 |
- |
RS14460 |
Unspecified |
| scaffold5438 |
65985 |
66257 |
- |
Athila6A_I-int |
LTR/Gypsy |
| scaffold5438 |
66492 |
66540 |
+ |
(CAAG)n |
Simple_repeat |
| scaffold5438 |
66583 |
66659 |
- |
Gypsy-10_Mad-I |
LTR/Gypsy |
| scaffold5438 |
70180 |
70240 |
+ |
PL24 |
Unspecified |
| scaffold5438 |
70228 |
70334 |
+ |
PL24 |
Unspecified |
| scaffold5438 |
70827 |
70998 |
+ |
RS128 |
Unspecified |
| scaffold5438 |
71006 |
71065 |
- |
RS13929 |
Unspecified |
| scaffold5438 |
71075 |
71096 |
+ |
(T)n |
Simple_repeat |
| scaffold5438 |
71478 |
71896 |
+ |
PL272 |
Unspecified |
| scaffold5438 |
73431 |
73470 |
+ |
A-rich |
Low_complexity |
| scaffold5438 |
73749 |
73773 |
+ |
(ACC)n |
Simple_repeat |
| scaffold5438 |
75071 |
75087 |
+ |
(ATATTA)n |
Simple_repeat |
| scaffold5438 |
75088 |
75121 |
+ |
(ATA)n |
Simple_repeat |
| scaffold5438 |
75122 |
75146 |
+ |
(ATATTA)n |
Simple_repeat |
| scaffold5438 |
75149 |
75195 |
+ |
GA-rich |
Low_complexity |
| scaffold5438 |
75399 |
75459 |
+ |
(ATTT)n |
Simple_repeat |
| scaffold5438 |
75538 |
75554 |
+ |
(A)n |
Simple_repeat |
| scaffold5438 |
76438 |
76678 |
+ |
RS18 |
Unspecified |
| scaffold5438 |
76961 |
77509 |
+ |
PL188 |
Unspecified |
| scaffold5438 |
78983 |
80127 |
- |
RS9621 |
Unspecified |
| scaffold5438 |
80613 |
81107 |
- |
RS1268 |
Unspecified |