scaffold5439 Repeat List
| genome |
start |
end |
strand |
repeat-name |
repeat-class |
| scaffold5439 |
1 |
1247 |
- |
RS4448 |
Unspecified |
| scaffold5439 |
2149 |
2269 |
+ |
RS3580 |
Unspecified |
| scaffold5439 |
2179 |
2425 |
- |
RS725 |
Unspecified |
| scaffold5439 |
2891 |
3100 |
+ |
Copia-89_VV-I |
LTR/Copia |
| scaffold5439 |
3121 |
3225 |
+ |
Copia-89_VV-I |
LTR/Copia |
| scaffold5439 |
3884 |
4059 |
+ |
Copia-89_VV-I |
LTR/Copia |
| scaffold5439 |
4214 |
4765 |
+ |
Copia-89_VV-I |
LTR/Copia |
| scaffold5439 |
5175 |
5214 |
+ |
Copia-2_PTri-LTR |
LTR/Copia |
| scaffold5439 |
6261 |
6296 |
+ |
(TCAG)n |
Simple_repeat |
| scaffold5439 |
7194 |
7374 |
+ |
RS9820 |
Unspecified |
| scaffold5439 |
7668 |
7736 |
+ |
A-rich |
Low_complexity |
| scaffold5439 |
7782 |
10301 |
+ |
MuDR_A_B |
MuDR_A_B(TransposonPSI) |
| scaffold5439 |
7790 |
7837 |
+ |
(TGA)n |
Simple_repeat |
| scaffold5439 |
8652 |
9187 |
+ |
MuDRASH3_MT |
DNA/MULE-MuDR |
| scaffold5439 |
9361 |
9487 |
+ |
MUDSOLT1 |
DNA/MULE-MuDR |
| scaffold5439 |
9998 |
10046 |
+ |
Arnold4 |
DNA/MULE-MuDR |
| scaffold5439 |
10180 |
10265 |
+ |
(CCACTG)n |
Simple_repeat |
| scaffold5439 |
10335 |
10385 |
+ |
(TGTG)n |
Simple_repeat |
| scaffold5439 |
10831 |
10865 |
+ |
A-rich |
Low_complexity |
| scaffold5439 |
11171 |
11654 |
+ |
PL838 |
Unspecified |
| scaffold5439 |
11571 |
11668 |
- |
PL838 |
Unspecified |
| scaffold5439 |
11680 |
11718 |
+ |
(TTCATT)n |
Simple_repeat |
| scaffold5439 |
12758 |
12868 |
+ |
(ATTTCAA)n |
Simple_repeat |
| scaffold5439 |
12893 |
13350 |
+ |
RS804 |
Unspecified |
| scaffold5439 |
13395 |
13488 |
+ |
RS16382 |
Unspecified |
| scaffold5439 |
13700 |
13966 |
+ |
RS10 |
Unspecified |
| scaffold5439 |
14859 |
15110 |
- |
RS4 |
Unspecified |
| scaffold5439 |
16368 |
16415 |
+ |
A-rich |
Low_complexity |
| scaffold5439 |
16872 |
16921 |
+ |
(CTCTCTTTTT)n |
Simple_repeat |
| scaffold5439 |
18674 |
18721 |
+ |
RS6187 |
Unspecified |
| scaffold5439 |
19059 |
19115 |
+ |
(CAACCAA)n |
Simple_repeat |
| scaffold5439 |
19289 |
19688 |
- |
RS2626 |
Unspecified |
| scaffold5439 |
19924 |
20041 |
+ |
RS1172 |
Unspecified |
| scaffold5439 |
19937 |
20190 |
- |
RS586 |
Unspecified |
| scaffold5439 |
21087 |
21158 |
+ |
(AAC)n |
Simple_repeat |
| scaffold5439 |
25561 |
25598 |
+ |
A-rich |
Low_complexity |
| scaffold5439 |
26307 |
26330 |
+ |
(A)n |
Simple_repeat |
| scaffold5439 |
26737 |
26902 |
+ |
RS573 |
Unspecified |
| scaffold5439 |
30107 |
30143 |
+ |
A-rich |
Low_complexity |
| scaffold5439 |
30410 |
30472 |
+ |
(CAA)n |
Simple_repeat |
| scaffold5439 |
30847 |
30906 |
+ |
(GGT)n |
Simple_repeat |
| scaffold5439 |
31028 |
31056 |
+ |
(T)n |
Simple_repeat |
| scaffold5439 |
31242 |
31492 |
- |
RS586 |
Unspecified |
| scaffold5439 |
31735 |
32085 |
+ |
RS4921 |
Unspecified |
| scaffold5439 |
32116 |
32207 |
+ |
(TCTTTCG)n |
Simple_repeat |
| scaffold5439 |
32271 |
32324 |
+ |
RS18358 |
Unspecified |
| scaffold5439 |
32476 |
32537 |
+ |
RS18361 |
Unspecified |
| scaffold5439 |
32484 |
32702 |
- |
RS356 |
Unspecified |
| scaffold5439 |
32484 |
32792 |
+ |
RS586 |
Unspecified |
| scaffold5439 |
32700 |
32805 |
- |
RS15271 |
Unspecified |
| scaffold5439 |
33136 |
33286 |
+ |
(CCGGAT)n |
Simple_repeat |
| scaffold5439 |
33293 |
33323 |
+ |
(T)n |
Simple_repeat |
| scaffold5439 |
33565 |
33587 |
+ |
(T)n |
Simple_repeat |
| scaffold5439 |
33715 |
33746 |
+ |
G-rich |
Low_complexity |
| scaffold5439 |
33862 |
33989 |
+ |
REP-1_ZM |
Unknown |
| scaffold5439 |
34518 |
34589 |
+ |
Copia-93_VV-I |
LTR/Copia |
| scaffold5439 |
34518 |
34950 |
+ |
Copia-93_VV-I |
LTR/Copia |
| scaffold5439 |
34580 |
34950 |
+ |
RS2558 |
Unspecified |
| scaffold5439 |
34926 |
35898 |
+ |
RS545 |
Unspecified |
| scaffold5439 |
35932 |
36108 |
+ |
TY1_Copia |
TY1_Copia(TransposonPSI) |
| scaffold5439 |
38111 |
38210 |
+ |
REP-1_ZM |
Unknown |
| scaffold5439 |
41445 |
41497 |
+ |
RS16636 |
Unspecified |
| scaffold5439 |
46650 |
46749 |
+ |
RS285 |
Unspecified |
| scaffold5439 |
48150 |
48362 |
+ |
RS1512 |
Unspecified |
| scaffold5439 |
48453 |
48504 |
+ |
(TTTA)n |
Simple_repeat |
| scaffold5439 |
48649 |
48795 |
- |
RS7527 |
Unspecified |
| scaffold5439 |
48874 |
49060 |
- |
RS7956 |
Unspecified |
| scaffold5439 |
49102 |
49201 |
- |
RS7537 |
Unspecified |
| scaffold5439 |
49393 |
49418 |
+ |
(AATA)n |
Simple_repeat |
| scaffold5439 |
49440 |
49642 |
- |
RS4647 |
Unspecified |
| scaffold5439 |
49631 |
49856 |
- |
RS10181 |
Unspecified |
| scaffold5439 |
50356 |
50404 |
+ |
(ATGAATA)n |
Simple_repeat |
| scaffold5439 |
51960 |
52040 |
+ |
Copia-85_ST-I |
LTR/Copia |
| scaffold5439 |
52234 |
52350 |
+ |
META1_I-int |
LTR/Copia |
| scaffold5439 |
52353 |
52387 |
+ |
(TTGTA)n |
Simple_repeat |
| scaffold5439 |
52353 |
52597 |
+ |
(TTGTA)n |
Simple_repeat |
| scaffold5439 |
52373 |
52597 |
+ |
RS3596 |
Unspecified |
| scaffold5439 |
52412 |
52604 |
+ |
RS1512 |
Unspecified |
| scaffold5439 |
52752 |
52782 |
+ |
(ATTTTA)n |
Simple_repeat |
| scaffold5439 |
52905 |
53232 |
+ |
RS17106 |
Unspecified |
| scaffold5439 |
53246 |
53337 |
+ |
RS17106 |
Unspecified |
| scaffold5439 |
53363 |
54966 |
- |
Copia-21_Pru-I |
LTR/Copia |
| scaffold5439 |
55364 |
56219 |
- |
Copia-21_Pru-I |
LTR/Copia |
| scaffold5439 |
56371 |
56545 |
- |
Copia-21_Pru-I |
LTR/Copia |
| scaffold5439 |
56601 |
56710 |
- |
Copia-44_GM-I |
LTR/Copia |
| scaffold5439 |
56870 |
57820 |
- |
TY1_Copia |
TY1_Copia(TransposonPSI) |
| scaffold5439 |
57702 |
57782 |
- |
Copia-44_GM-I |
LTR/Copia |
| scaffold5439 |
57889 |
57934 |
+ |
GA-rich |
Low_complexity |
| scaffold5439 |
57979 |
58306 |
+ |
RS17106 |
Unspecified |
| scaffold5439 |
58395 |
58649 |
+ |
RS82 |
Unspecified |
| scaffold5439 |
58895 |
58936 |
+ |
(ATAAGA)n |
Simple_repeat |
| scaffold5439 |
59073 |
59102 |
+ |
A-rich |
Low_complexity |
| scaffold5439 |
59323 |
59366 |
+ |
(ATA)n |
Simple_repeat |
| scaffold5439 |
59595 |
59653 |
+ |
(TTTCTGT)n |
Simple_repeat |
| scaffold5439 |
63013 |
63144 |
- |
PL779 |
Unspecified |
| scaffold5439 |
63649 |
63806 |
+ |
RS620 |
Unspecified |
| scaffold5439 |
67873 |
67902 |
+ |
(T)n |
Simple_repeat |
| scaffold5439 |
68056 |
68082 |
+ |
(T)n |
Simple_repeat |
| scaffold5439 |
68123 |
68142 |
+ |
(A)n |
Simple_repeat |
| scaffold5439 |
69012 |
69067 |
+ |
(TTATAA)n |
Simple_repeat |
| scaffold5439 |
69318 |
69406 |
- |
RS748 |
Unspecified |
| scaffold5439 |
69470 |
69523 |
+ |
(A)n |
Simple_repeat |
| scaffold5439 |
69802 |
69846 |
+ |
(AATTTTG)n |
Simple_repeat |
| scaffold5439 |
70390 |
70473 |
- |
RS748 |
Unspecified |
| scaffold5439 |
70764 |
70927 |
- |
RS4140 |
Unspecified |
| scaffold5439 |
71660 |
71841 |
+ |
RS5 |
Unspecified |
| scaffold5439 |
72175 |
72206 |
+ |
(A)n |
Simple_repeat |
| scaffold5439 |
72238 |
72272 |
+ |
A-rich |
Low_complexity |
| scaffold5439 |
72273 |
72296 |
+ |
(A)n |
Simple_repeat |
| scaffold5439 |
75288 |
75306 |
+ |
(TTG)n |
Simple_repeat |
| scaffold5439 |
76473 |
76514 |
+ |
(T)n |
Simple_repeat |
| scaffold5439 |
76647 |
76676 |
+ |
(ATTGTCA)n |
Simple_repeat |
| scaffold5439 |
76976 |
77018 |
+ |
(AATAA)n |
Simple_repeat |
| scaffold5439 |
77063 |
77241 |
- |
PL524 |
Unspecified |
| scaffold5439 |
78044 |
78125 |
+ |
RS4409 |
Unspecified |
| scaffold5439 |
78794 |
78821 |
+ |
(ATTTT)n |
Simple_repeat |
| scaffold5439 |
80024 |
80232 |
+ |
RS13321 |
Unspecified |
| scaffold5439 |
80597 |
81629 |
+ |
RIRE1_I-int |
LTR/Copia |