scaffold5480 Repeat List
genome |
start |
end |
strand |
repeat-name |
repeat-class |
scaffold5480 |
46 |
742 |
+ |
Gypsy-23_VV-I |
LTR/Gypsy |
scaffold5480 |
779 |
939 |
+ |
Gypsy-LTR_MT |
LTR/Gypsy |
scaffold5480 |
875 |
939 |
+ |
Gypsy-LTR_MT |
LTR/Gypsy |
scaffold5480 |
1179 |
1202 |
+ |
(A)n |
Simple_repeat |
scaffold5480 |
1700 |
2088 |
- |
RS5609 |
Unspecified |
scaffold5480 |
1937 |
2367 |
+ |
RS1001 |
Unspecified |
scaffold5480 |
2690 |
3580 |
+ |
RS878 |
Unspecified |
scaffold5480 |
3616 |
3957 |
+ |
RS160 |
Unspecified |
scaffold5480 |
4983 |
5093 |
+ |
A-rich |
Low_complexity |
scaffold5480 |
5081 |
5123 |
+ |
G-rich |
Low_complexity |
scaffold5480 |
5334 |
5598 |
+ |
PL522 |
Unspecified |
scaffold5480 |
5598 |
6114 |
- |
PL799 |
Unspecified |
scaffold5480 |
6765 |
6793 |
+ |
(ATTT)n |
Simple_repeat |
scaffold5480 |
7795 |
7829 |
+ |
(AAAAT)n |
Simple_repeat |
scaffold5480 |
7836 |
8181 |
+ |
RS12189 |
Unspecified |
scaffold5480 |
8398 |
8676 |
+ |
RS8598 |
Unspecified |
scaffold5480 |
8904 |
9004 |
+ |
A-rich |
Low_complexity |
scaffold5480 |
9153 |
9705 |
- |
RS12449 |
Unspecified |
scaffold5480 |
9973 |
10005 |
+ |
(A)n |
Simple_repeat |
scaffold5480 |
10043 |
10187 |
+ |
(CCCGA)n |
Simple_repeat |
scaffold5480 |
10434 |
10506 |
- |
PL380 |
Unspecified |
scaffold5480 |
10955 |
11297 |
- |
PL438 |
Unspecified |
scaffold5480 |
11471 |
11531 |
+ |
(AATTT)n |
Simple_repeat |
scaffold5480 |
11803 |
12025 |
- |
PL688 |
Unspecified |
scaffold5480 |
13125 |
13529 |
- |
RS3309 |
Unspecified |
scaffold5480 |
14756 |
14810 |
+ |
A-rich |
Low_complexity |
scaffold5480 |
15080 |
16078 |
+ |
PL355 |
Unspecified |
scaffold5480 |
17759 |
17830 |
+ |
Ogre-VP1_I-int |
LTR/Gypsy |
scaffold5480 |
18715 |
18816 |
+ |
Ogre-PT1_I-int |
LTR/Gypsy |
scaffold5480 |
19522 |
19653 |
+ |
Ogre-VP1_I-int |
LTR/Gypsy |
scaffold5480 |
20110 |
21353 |
- |
RS149 |
Unspecified |
scaffold5480 |
20774 |
21697 |
- |
RS709 |
Unspecified |
scaffold5480 |
21666 |
21901 |
- |
RS709 |
Unspecified |
scaffold5480 |
21901 |
23031 |
+ |
RS247 |
Unspecified |
scaffold5480 |
23133 |
23187 |
+ |
A-rich |
Low_complexity |
scaffold5480 |
23931 |
24653 |
- |
PL333 |
Unspecified |
scaffold5480 |
24086 |
24116 |
+ |
(AAATAA)n |
Simple_repeat |
scaffold5480 |
24655 |
24970 |
- |
PL333 |
Unspecified |
scaffold5480 |
25122 |
25206 |
+ |
(CAACCA)n |
Simple_repeat |
scaffold5480 |
25920 |
26700 |
- |
RS1838 |
Unspecified |
scaffold5480 |
26713 |
26777 |
+ |
(GATT)n |
Simple_repeat |
scaffold5480 |
27318 |
27372 |
+ |
(TTTAT)n |
Simple_repeat |
scaffold5480 |
27399 |
27469 |
+ |
(CCG)n |
Simple_repeat |
scaffold5480 |
27743 |
28272 |
- |
RS12449 |
Unspecified |
scaffold5480 |
28320 |
28467 |
- |
RS12449 |
Unspecified |
scaffold5480 |
29200 |
29245 |
+ |
A-rich |
Low_complexity |
scaffold5480 |
29281 |
29309 |
+ |
(AT)n |
Simple_repeat |
scaffold5480 |
30293 |
30373 |
+ |
RS5548 |
Unspecified |
scaffold5480 |
30514 |
31002 |
+ |
RS5548 |
Unspecified |
scaffold5480 |
31440 |
31595 |
+ |
RS10766 |
Unspecified |
scaffold5480 |
31599 |
31634 |
+ |
(TTCAA)n |
Simple_repeat |
scaffold5480 |
31747 |
31929 |
+ |
RS14172 |
Unspecified |
scaffold5480 |
32340 |
32371 |
+ |
(TTTAT)n |
Simple_repeat |
scaffold5480 |
32663 |
32874 |
- |
RS4039 |
Unspecified |
scaffold5480 |
32918 |
33126 |
- |
RS3371 |
Unspecified |
scaffold5480 |
33283 |
33357 |
- |
RS3371 |
Unspecified |
scaffold5480 |
33864 |
34067 |
- |
RS4387 |
Unspecified |
scaffold5480 |
34075 |
34719 |
- |
RS2491 |
Unspecified |
scaffold5480 |
35016 |
35397 |
- |
RS4035 |
Unspecified |
scaffold5480 |
36035 |
36127 |
+ |
A-rich |
Low_complexity |
scaffold5480 |
36188 |
36381 |
- |
RS6712 |
Unspecified |
scaffold5480 |
36470 |
36601 |
- |
RS6712 |
Unspecified |
scaffold5480 |
37168 |
37563 |
+ |
PL840 |
Unspecified |
scaffold5480 |
37624 |
37649 |
+ |
(AACAG)n |
Simple_repeat |
scaffold5480 |
37672 |
37772 |
- |
SZ-25_LTR |
LTR/Copia |
scaffold5480 |
38086 |
38244 |
+ |
PL903 |
Unspecified |
scaffold5480 |
38591 |
38623 |
+ |
(TGGTC)n |
Simple_repeat |
scaffold5480 |
40757 |
41191 |
- |
gypsy |
gypsy(TransposonPSI) |
scaffold5480 |
40955 |
41173 |
- |
Gypsy16-VV_I-int |
LTR/Gypsy |
scaffold5480 |
41232 |
42223 |
- |
Gypsy3-VV_I-int |
LTR/Gypsy |
scaffold5480 |
42229 |
42475 |
- |
Gypsy-20_BRa-I |
LTR/Gypsy |
scaffold5480 |
44308 |
45195 |
- |
gypsy |
gypsy(TransposonPSI) |
scaffold5480 |
44308 |
44823 |
- |
gypsy |
gypsy(TransposonPSI) |
scaffold5480 |
44311 |
44765 |
- |
Gypsy-20_BRa-I |
LTR/Gypsy |
scaffold5480 |
44775 |
45195 |
- |
PL743 |
Unspecified |
scaffold5480 |
45069 |
45482 |
+ |
PL903 |
Unspecified |
scaffold5480 |
46495 |
46527 |
+ |
(TGGTC)n |
Simple_repeat |
scaffold5480 |
47515 |
47539 |
+ |
(GAA)n |
Simple_repeat |
scaffold5480 |
47574 |
47989 |
- |
PL844 |
Unspecified |
scaffold5480 |
48383 |
48936 |
- |
Gypsy16-VV_I-int |
LTR/Gypsy |