scaffold5544 Repeat List
| genome |
start |
end |
strand |
repeat-name |
repeat-class |
| scaffold5544 |
105 |
346 |
+ |
RS4 |
Unspecified |
| scaffold5544 |
520 |
1277 |
+ |
PL771 |
Unspecified |
| scaffold5544 |
1295 |
1324 |
+ |
(ATAAT)n |
Simple_repeat |
| scaffold5544 |
1588 |
1824 |
+ |
RS15470 |
Unspecified |
| scaffold5544 |
1620 |
1824 |
+ |
RS4 |
Unspecified |
| scaffold5544 |
2248 |
2261 |
+ |
(AGTAAT)n |
Simple_repeat |
| scaffold5544 |
2262 |
2317 |
+ |
(AGT)n |
Simple_repeat |
| scaffold5544 |
3087 |
3123 |
+ |
(ATT)n |
Simple_repeat |
| scaffold5544 |
4604 |
4749 |
- |
LTR2-ZM_LTR |
LTR |
| scaffold5544 |
4750 |
4865 |
+ |
RS8492 |
Unspecified |
| scaffold5544 |
4867 |
5023 |
- |
LTR2-ZM_LTR |
LTR |
| scaffold5544 |
5050 |
5245 |
+ |
PL306 |
Unspecified |
| scaffold5544 |
5094 |
5590 |
+ |
PL306 |
Unspecified |
| scaffold5544 |
5589 |
6157 |
+ |
RS8492 |
Unspecified |
| scaffold5544 |
6309 |
7688 |
+ |
LINE |
LINE(TransposonPSI) |
| scaffold5544 |
6360 |
6432 |
+ |
VLINE2_VV |
LINE/L1 |
| scaffold5544 |
6795 |
7430 |
+ |
L1-5_STu |
LINE/L1 |
| scaffold5544 |
9270 |
9303 |
+ |
Gypsy-23_VV-I |
LTR/Gypsy |
| scaffold5544 |
10550 |
10586 |
+ |
A-rich |
Low_complexity |
| scaffold5544 |
12527 |
12551 |
+ |
(AAACA)n |
Simple_repeat |
| scaffold5544 |
12808 |
13202 |
- |
RS10272 |
Unspecified |
| scaffold5544 |
13555 |
13946 |
- |
RS265 |
Unspecified |
| scaffold5544 |
13937 |
14871 |
- |
RS265 |
Unspecified |
| scaffold5544 |
15270 |
15375 |
+ |
RS883 |
Unspecified |
| scaffold5544 |
15375 |
15416 |
- |
RS64 |
Unspecified |
| scaffold5544 |
15575 |
15813 |
- |
LTR2-ZM_LTR |
LTR |
| scaffold5544 |
15719 |
15845 |
+ |
MIDWAY |
DNA/hAT-Tip100 |
| scaffold5544 |
16299 |
16579 |
- |
PIGY-I_PS |
LTR/Gypsy |
| scaffold5544 |
16812 |
17288 |
+ |
RS783 |
Unspecified |
| scaffold5544 |
17424 |
17651 |
- |
RS313 |
Unspecified |
| scaffold5544 |
18200 |
18272 |
+ |
A-rich |
Low_complexity |
| scaffold5544 |
18845 |
18953 |
+ |
Gypsy-9_Mad-I |
LTR/Gypsy |
| scaffold5544 |
19308 |
20090 |
+ |
(T)n |
Simple_repeat |
| scaffold5544 |
19308 |
19324 |
+ |
(T)n |
Simple_repeat |
| scaffold5544 |
19320 |
20090 |
+ |
RS2778 |
Unspecified |
| scaffold5544 |
21228 |
21446 |
+ |
RS1048 |
Unspecified |
| scaffold5544 |
21546 |
21585 |
+ |
(TTCCTT)n |
Simple_repeat |
| scaffold5544 |
22945 |
23027 |
+ |
(GATGAA)n |
Simple_repeat |
| scaffold5544 |
23919 |
24136 |
+ |
RS1062 |
Unspecified |
| scaffold5544 |
24204 |
24250 |
+ |
(CGACC)n |
Simple_repeat |
| scaffold5544 |
24772 |
24846 |
+ |
(CCA)n |
Simple_repeat |
| scaffold5544 |
24876 |
24931 |
+ |
(AAT)n |
Simple_repeat |
| scaffold5544 |
25276 |
25325 |
+ |
(AATATAA)n |
Simple_repeat |
| scaffold5544 |
25765 |
25938 |
+ |
PL675 |
Unspecified |
| scaffold5544 |
25809 |
25982 |
+ |
PL93 |
Unspecified |
| scaffold5544 |
26860 |
26893 |
- |
SUKKULA4_HV_LTR |
LTR/Gypsy |
| scaffold5544 |
27069 |
27106 |
+ |
(TCCAT)n |
Simple_repeat |
| scaffold5544 |
27129 |
27366 |
+ |
(CCCGA)n |
Simple_repeat |
| scaffold5544 |
27540 |
27793 |
+ |
(CCCGA)n |
Simple_repeat |
| scaffold5544 |
29001 |
29058 |
- |
STOWAWAY2_SB |
DNA/TcMar-Stowaway |
| scaffold5544 |
29469 |
29764 |
- |
Copia16-VV_I-int |
LTR/Copia |
| scaffold5544 |
30131 |
30154 |
+ |
(TAT)n |
Simple_repeat |
| scaffold5544 |
30663 |
30679 |
- |
RTE-1_STu |
LINE/RTE-BovB |
| scaffold5544 |
30680 |
30776 |
- |
SINE2-1_PD |
SINE/tRNA-RTE |
| scaffold5544 |
30887 |
30919 |
+ |
(A)n |
Simple_repeat |
| scaffold5544 |
31994 |
32013 |
+ |
(T)n |
Simple_repeat |
| scaffold5544 |
45610 |
45648 |
+ |
A-rich |
Low_complexity |
| scaffold5544 |
46441 |
46519 |
+ |
(CCGGAT)n |
Simple_repeat |
| scaffold5544 |
46700 |
46780 |
+ |
A-rich |
Low_complexity |
| scaffold5544 |
46927 |
46973 |
+ |
(TATTT)n |
Simple_repeat |
| scaffold5544 |
47616 |
47659 |
+ |
Helitron-2_PTr |
RC/Helitron |
| scaffold5544 |
47904 |
48027 |
- |
LTR2-ZM_LTR |
LTR |
| scaffold5544 |
51472 |
51509 |
+ |
RS4607 |
Unspecified |
| scaffold5544 |
51504 |
51656 |
+ |
RS4607 |
Unspecified |
| scaffold5544 |
52677 |
52793 |
+ |
RS3663 |
Unspecified |
| scaffold5544 |
52701 |
52805 |
- |
RS4362 |
Unspecified |
| scaffold5544 |
55746 |
55854 |
+ |
RS972 |
Unspecified |
| scaffold5544 |
57032 |
57077 |
+ |
GA-rich |
Low_complexity |
| scaffold5544 |
57116 |
57366 |
+ |
(TTCAG)n |
Simple_repeat |
| scaffold5544 |
57156 |
57366 |
+ |
(TTCAG)n |
Simple_repeat |
| scaffold5544 |
58216 |
58272 |
+ |
(ATTTCAA)n |
Simple_repeat |
| scaffold5544 |
58316 |
58336 |
+ |
(AT)n |
Simple_repeat |
| scaffold5544 |
58510 |
58551 |
+ |
(ATCCGAA)n |
Simple_repeat |
| scaffold5544 |
58810 |
58832 |
+ |
(A)n |
Simple_repeat |
| scaffold5544 |
58901 |
58965 |
+ |
ATHATN1 |
DNA/hAT-Ac |
| scaffold5544 |
59144 |
59314 |
+ |
hAT-17N1_ZM |
DNA/hAT-Ac |
| scaffold5544 |
59231 |
59323 |
- |
hAT-17N1_ZM |
DNA/hAT-Ac |
| scaffold5544 |
59324 |
59379 |
+ |
A-rich |
Low_complexity |
| scaffold5544 |
59540 |
59667 |
- |
RS3924 |
Unspecified |
| scaffold5544 |
59704 |
60013 |
+ |
RS891 |
Unspecified |
| scaffold5544 |
60061 |
60110 |
+ |
A-rich |
Low_complexity |
| scaffold5544 |
61283 |
61513 |
+ |
RS18 |
Unspecified |
| scaffold5544 |
61664 |
61694 |
+ |
A-rich |
Low_complexity |
| scaffold5544 |
61832 |
61936 |
- |
RS16382 |
Unspecified |
| scaffold5544 |
62502 |
62712 |
+ |
(TTCAG)n |
Simple_repeat |
| scaffold5544 |
63403 |
63588 |
- |
RS2105 |
Unspecified |
| scaffold5544 |
64088 |
64126 |
+ |
A-rich |
Low_complexity |
| scaffold5544 |
65024 |
65090 |
+ |
(AGTTC)n |
Simple_repeat |
| scaffold5544 |
65118 |
65166 |
+ |
(ATTCAGTTCA)n |
Simple_repeat |
| scaffold5544 |
65610 |
65672 |
+ |
(TAAT)n |
Simple_repeat |
| scaffold5544 |
66777 |
67040 |
+ |
RS356 |
Unspecified |
| scaffold5544 |
67007 |
67052 |
+ |
RS4475 |
Unspecified |
| scaffold5544 |
67911 |
67945 |
+ |
(AGGAGA)n |
Simple_repeat |
| scaffold5544 |
68048 |
68092 |
+ |
(GAC)n |
Simple_repeat |
| scaffold5544 |
70123 |
70192 |
+ |
(ATTTA)n |
Simple_repeat |
| scaffold5544 |
70332 |
70361 |
+ |
(T)n |
Simple_repeat |
| scaffold5544 |
70441 |
70540 |
- |
RS109 |
Unspecified |
| scaffold5544 |
70541 |
70900 |
- |
PL301 |
Unspecified |
| scaffold5544 |
70751 |
71297 |
- |
RS364 |
Unspecified |
| scaffold5544 |
71472 |
71541 |
+ |
(ATTTA)n |
Simple_repeat |
| scaffold5544 |
71690 |
71719 |
+ |
(T)n |
Simple_repeat |
| scaffold5544 |
71781 |
72034 |
+ |
RS26 |
Unspecified |
| scaffold5544 |
74213 |
74505 |
- |
RS7727 |
Unspecified |
| scaffold5544 |
74892 |
74928 |
+ |
(TAA)n |
Simple_repeat |
| scaffold5544 |
75473 |
75737 |
- |
RS106 |
Unspecified |
| scaffold5544 |
75942 |
75965 |
+ |
(TTG)n |
Simple_repeat |
| scaffold5544 |
76897 |
77143 |
- |
RS581 |
Unspecified |
| scaffold5544 |
78681 |
78712 |
+ |
(TTC)n |
Simple_repeat |
| scaffold5544 |
78798 |
78839 |
+ |
(TTTTCT)n |
Simple_repeat |
| scaffold5544 |
78798 |
79228 |
+ |
(TTTTCT)n |
Simple_repeat |
| scaffold5544 |
78821 |
79228 |
+ |
RS9079 |
Unspecified |
| scaffold5544 |
79471 |
79830 |
- |
RS9161 |
Unspecified |
| scaffold5544 |
79845 |
79959 |
- |
RS6584 |
Unspecified |
| scaffold5544 |
82157 |
82298 |
+ |
RS13796 |
Unspecified |
| scaffold5544 |
82403 |
82430 |
+ |
A-rich |
Low_complexity |
| scaffold5544 |
82493 |
82597 |
+ |
RS13521 |
Unspecified |
| scaffold5544 |
82755 |
82876 |
- |
RS7715 |
Unspecified |
| scaffold5544 |
84062 |
84189 |
+ |
RS13851 |
Unspecified |
| scaffold5544 |
84486 |
84524 |
+ |
A-rich |
Low_complexity |
| scaffold5544 |
84525 |
84541 |
+ |
GA-rich |
Low_complexity |
| scaffold5544 |
84754 |
84788 |
+ |
(TTTAAA)n |
Simple_repeat |
| scaffold5544 |
84880 |
85157 |
+ |
RS30 |
Unspecified |
| scaffold5544 |
86592 |
86638 |
+ |
(TTCACTA)n |
Simple_repeat |