scaffold5549 Repeat List
| genome |
start |
end |
strand |
repeat-name |
repeat-class |
| scaffold5549 |
15 |
68 |
+ |
Helitron-N3_ZM |
RC/Helitron |
| scaffold5549 |
471 |
631 |
+ |
Helitron-N3_ZM |
RC/Helitron |
| scaffold5549 |
738 |
833 |
+ |
RS7197 |
Unspecified |
| scaffold5549 |
1560 |
1670 |
- |
cacta |
cacta(TransposonPSI) |
| scaffold5549 |
2401 |
2426 |
+ |
(A)n |
Simple_repeat |
| scaffold5549 |
2427 |
2449 |
+ |
GA-rich |
Low_complexity |
| scaffold5549 |
2684 |
2972 |
- |
RS202 |
Unspecified |
| scaffold5549 |
2963 |
3198 |
+ |
RS2339 |
Unspecified |
| scaffold5549 |
3192 |
3595 |
- |
RS1018 |
Unspecified |
| scaffold5549 |
3908 |
3932 |
+ |
(A)n |
Simple_repeat |
| scaffold5549 |
4020 |
4075 |
+ |
SINE2-1_STu |
SINE/tRNA |
| scaffold5549 |
5988 |
6007 |
+ |
(A)n |
Simple_repeat |
| scaffold5549 |
13228 |
13251 |
+ |
(A)n |
Simple_repeat |
| scaffold5549 |
13402 |
13420 |
+ |
(A)n |
Simple_repeat |
| scaffold5549 |
14400 |
14521 |
+ |
(CCCGA)n |
Simple_repeat |
| scaffold5549 |
14878 |
14904 |
+ |
(A)n |
Simple_repeat |
| scaffold5549 |
15616 |
15754 |
- |
RS11022 |
Unspecified |
| scaffold5549 |
15793 |
16526 |
+ |
RS14300 |
Unspecified |
| scaffold5549 |
16574 |
16747 |
+ |
RS16411 |
Unspecified |
| scaffold5549 |
16796 |
17008 |
+ |
RS14469 |
Unspecified |
| scaffold5549 |
17012 |
17176 |
+ |
RS8200 |
Unspecified |
| scaffold5549 |
17112 |
17222 |
- |
RS12886 |
Unspecified |
| scaffold5549 |
17466 |
17704 |
+ |
RS13616 |
Unspecified |
| scaffold5549 |
17820 |
18162 |
- |
RS8023 |
Unspecified |
| scaffold5549 |
18229 |
18353 |
- |
RS10331 |
Unspecified |
| scaffold5549 |
18634 |
19119 |
+ |
RS2015 |
Unspecified |
| scaffold5549 |
18675 |
20350 |
+ |
PL124 |
Unspecified |
| scaffold5549 |
18714 |
19177 |
- |
RS138 |
Unspecified |
| scaffold5549 |
19164 |
19254 |
+ |
RS11600 |
Unspecified |
| scaffold5549 |
19253 |
19402 |
+ |
(TCTAAC)n |
Simple_repeat |
| scaffold5549 |
19337 |
19402 |
+ |
(TCTAAC)n |
Simple_repeat |
| scaffold5549 |
20444 |
20468 |
+ |
(T)n |
Simple_repeat |
| scaffold5549 |
20731 |
21285 |
+ |
PL165 |
Unspecified |
| scaffold5549 |
21296 |
21319 |
+ |
(ATTT)n |
Simple_repeat |
| scaffold5549 |
21730 |
21892 |
+ |
RS12281 |
Unspecified |
| scaffold5549 |
23106 |
23152 |
+ |
(AATCAA)n |
Simple_repeat |
| scaffold5549 |
23273 |
23369 |
+ |
(GGT)n |
Simple_repeat |
| scaffold5549 |
23369 |
23387 |
+ |
(GTC)n |
Simple_repeat |
| scaffold5549 |
23404 |
23428 |
+ |
(T)n |
Simple_repeat |
| scaffold5549 |
23961 |
24517 |
- |
RS463 |
Unspecified |
| scaffold5549 |
24542 |
24569 |
+ |
(AATATT)n |
Simple_repeat |
| scaffold5549 |
24570 |
24606 |
+ |
A-rich |
Low_complexity |
| scaffold5549 |
24797 |
25031 |
+ |
RS4 |
Unspecified |
| scaffold5549 |
24982 |
25050 |
+ |
RS54 |
Unspecified |
| scaffold5549 |
25307 |
25685 |
- |
RS512 |
Unspecified |
| scaffold5549 |
26716 |
26988 |
+ |
(ATATT)n |
Simple_repeat |
| scaffold5549 |
26920 |
26988 |
+ |
(ATATT)n |
Simple_repeat |
| scaffold5549 |
27147 |
27361 |
- |
RS29 |
Unspecified |
| scaffold5549 |
27385 |
27432 |
+ |
(ATATTC)n |
Simple_repeat |
| scaffold5549 |
28481 |
28568 |
- |
RS4475 |
Unspecified |
| scaffold5549 |
29075 |
29263 |
+ |
RS9554 |
Unspecified |
| scaffold5549 |
29266 |
29383 |
+ |
RS14469 |
Unspecified |
| scaffold5549 |
30130 |
30286 |
+ |
RS8200 |
Unspecified |
| scaffold5549 |
30224 |
30304 |
- |
RS12886 |
Unspecified |
| scaffold5549 |
30391 |
30454 |
- |
Copia-3_PTri-I |
LTR/Copia |
| scaffold5549 |
30455 |
30693 |
+ |
RS13616 |
Unspecified |
| scaffold5549 |
30826 |
31168 |
- |
RS8023 |
Unspecified |
| scaffold5549 |
31238 |
31361 |
- |
RS10331 |
Unspecified |
| scaffold5549 |
31637 |
31738 |
+ |
RS11733 |
Unspecified |
| scaffold5549 |
32352 |
32611 |
- |
RS10 |
Unspecified |
| scaffold5549 |
33229 |
33683 |
- |
PL352 |
Unspecified |
| scaffold5549 |
33961 |
33989 |
+ |
A-rich |
Low_complexity |
| scaffold5549 |
35055 |
35119 |
+ |
(TGGCGG)n |
Simple_repeat |
| scaffold5549 |
35136 |
35224 |
+ |
(TGA)n |
Simple_repeat |
| scaffold5549 |
36329 |
36356 |
+ |
(T)n |
Simple_repeat |
| scaffold5549 |
36660 |
36683 |
+ |
(T)n |
Simple_repeat |
| scaffold5549 |
39141 |
39277 |
- |
RS11022 |
Unspecified |
| scaffold5549 |
39324 |
40058 |
+ |
RS14300 |
Unspecified |
| scaffold5549 |
40114 |
40147 |
+ |
RS16411 |
Unspecified |
| scaffold5549 |
40142 |
40355 |
+ |
RS14469 |
Unspecified |
| scaffold5549 |
40359 |
40407 |
+ |
RS8200 |
Unspecified |
| scaffold5549 |
40401 |
40509 |
- |
RS12886 |
Unspecified |
| scaffold5549 |
40753 |
40991 |
+ |
RS13616 |
Unspecified |
| scaffold5549 |
41107 |
41450 |
- |
RS8023 |
Unspecified |
| scaffold5549 |
41520 |
41643 |
- |
RS10331 |
Unspecified |
| scaffold5549 |
41919 |
42020 |
+ |
RS11733 |
Unspecified |
| scaffold5549 |
43767 |
44027 |
- |
RS185 |
Unspecified |
| scaffold5549 |
44407 |
44488 |
+ |
(TTT)n |
Simple_repeat |
| scaffold5549 |
44407 |
44588 |
+ |
(TTT)n |
Simple_repeat |
| scaffold5549 |
44478 |
44588 |
+ |
RS18358 |
Unspecified |
| scaffold5549 |
44639 |
44667 |
+ |
(T)n |
Simple_repeat |
| scaffold5549 |
44720 |
44821 |
+ |
RS18358 |
Unspecified |
| scaffold5549 |
45114 |
45158 |
+ |
RS18371 |
Unspecified |
| scaffold5549 |
46019 |
46045 |
+ |
(TCATA)n |
Simple_repeat |
| scaffold5549 |
46588 |
46736 |
+ |
(ATG)n |
Simple_repeat |
| scaffold5549 |
46980 |
47059 |
- |
RS35 |
Unspecified |
| scaffold5549 |
46982 |
47050 |
- |
PL683 |
Unspecified |
| scaffold5549 |
47071 |
47126 |
+ |
(CGGAC)n |
Simple_repeat |
| scaffold5549 |
47177 |
47201 |
+ |
(GGTCC)n |
Simple_repeat |
| scaffold5549 |
47351 |
47875 |
- |
PL268 |
Unspecified |
| scaffold5549 |
48218 |
48295 |
+ |
(AAGATG)n |
Simple_repeat |
| scaffold5549 |
48296 |
48322 |
+ |
(AAGACG)n |
Simple_repeat |
| scaffold5549 |
48412 |
48448 |
+ |
(TTTTC)n |
Simple_repeat |
| scaffold5549 |
49039 |
49129 |
+ |
A-rich |
Low_complexity |
| scaffold5549 |
49527 |
49757 |
- |
RS365 |
Unspecified |
| scaffold5549 |
50127 |
50266 |
+ |
RS11804 |
Unspecified |
| scaffold5549 |
50709 |
50825 |
+ |
RS4024 |
Unspecified |
| scaffold5549 |
51031 |
51047 |
+ |
(T)n |
Simple_repeat |
| scaffold5549 |
51118 |
51178 |
+ |
PIGY-I_PS |
LTR/Gypsy |
| scaffold5549 |
51561 |
51821 |
- |
STOWAWAY48_OS |
DNA/TcMar-Stowaway |
| scaffold5549 |
52028 |
52052 |
+ |
(AAAT)n |
Simple_repeat |
| scaffold5549 |
52411 |
52483 |
+ |
(TTTA)n |
Simple_repeat |
| scaffold5549 |
52708 |
52972 |
+ |
(ATATTA)n |
Simple_repeat |
| scaffold5549 |
52708 |
52817 |
+ |
(ATATTA)n |
Simple_repeat |
| scaffold5549 |
52771 |
52972 |
+ |
RS1483 |
Unspecified |
| scaffold5549 |
52915 |
53047 |
+ |
(T)n |
Simple_repeat |
| scaffold5549 |
53021 |
53047 |
+ |
(T)n |
Simple_repeat |
| scaffold5549 |
53453 |
53488 |
+ |
(T)n |
Simple_repeat |
| scaffold5549 |
53658 |
53768 |
+ |
RS2863 |
Unspecified |
| scaffold5549 |
53751 |
53811 |
+ |
RS2863 |
Unspecified |
| scaffold5549 |
53897 |
54029 |
+ |
RS7008 |
Unspecified |
| scaffold5549 |
54033 |
54127 |
+ |
A-rich |
Low_complexity |
| scaffold5549 |
54338 |
54532 |
- |
RS6949 |
Unspecified |
| scaffold5549 |
54726 |
54777 |
+ |
(AATTT)n |
Simple_repeat |
| scaffold5549 |
54966 |
55015 |
+ |
G-rich |
Low_complexity |
| scaffold5549 |
55401 |
55598 |
- |
RS439 |
Unspecified |
| scaffold5549 |
56843 |
57227 |
- |
RS29 |
Unspecified |
| scaffold5549 |
59153 |
59188 |
+ |
A-rich |
Low_complexity |
| scaffold5549 |
59866 |
59901 |
+ |
(T)n |
Simple_repeat |
| scaffold5549 |
60080 |
60141 |
+ |
A-rich |
Low_complexity |
| scaffold5549 |
65475 |
65511 |
+ |
(TAG)n |
Simple_repeat |
| scaffold5549 |
66926 |
67053 |
- |
RTE-2_STu |
LINE/RTE-BovB |
| scaffold5549 |
68097 |
68127 |
+ |
A-rich |
Low_complexity |
| scaffold5549 |
68824 |
68916 |
+ |
RS240 |
Unspecified |
| scaffold5549 |
68920 |
69184 |
+ |
RS356 |
Unspecified |
| scaffold5549 |
69285 |
69551 |
- |
RS102 |
Unspecified |
| scaffold5549 |
69804 |
69839 |
+ |
(ACTTTAA)n |
Simple_repeat |
| scaffold5549 |
70398 |
70678 |
+ |
PL48 |
Unspecified |
| scaffold5549 |
70680 |
70720 |
+ |
PL831 |
Unspecified |
| scaffold5549 |
70880 |
71001 |
- |
RS8168 |
Unspecified |
| scaffold5549 |
73615 |
73842 |
+ |
A-rich |
Low_complexity |
| scaffold5549 |
73615 |
73704 |
+ |
A-rich |
Low_complexity |
| scaffold5549 |
73667 |
73842 |
- |
RS2570 |
Unspecified |
| scaffold5549 |
73863 |
74021 |
+ |
RS10497 |
Unspecified |
| scaffold5549 |
73889 |
74021 |
- |
RS2570 |
Unspecified |
| scaffold5549 |
74223 |
74269 |
+ |
(CTCTCTC)n |
Simple_repeat |
| scaffold5549 |
74276 |
74339 |
+ |
(CCACCAC)n |
Simple_repeat |
| scaffold5549 |
75555 |
75656 |
+ |
(A)n |
Simple_repeat |
| scaffold5549 |
76443 |
76595 |
+ |
(ATA)n |
Simple_repeat |
| scaffold5549 |
76536 |
76595 |
+ |
(ATA)n |
Simple_repeat |
| scaffold5549 |
76536 |
76980 |
+ |
(ATA)n |
Simple_repeat |
| scaffold5549 |
76585 |
76980 |
- |
PL917 |
Unspecified |
| scaffold5549 |
77881 |
77905 |
+ |
(TATTT)n |
Simple_repeat |
| scaffold5549 |
77988 |
78012 |
+ |
(A)n |
Simple_repeat |
| scaffold5549 |
78425 |
78495 |
+ |
(TAA)n |
Simple_repeat |
| scaffold5549 |
78758 |
78795 |
+ |
A-rich |
Low_complexity |
| scaffold5549 |
78796 |
78821 |
+ |
(AAAAT)n |
Simple_repeat |
| scaffold5549 |
78984 |
79138 |
- |
RS2570 |
Unspecified |
| scaffold5549 |
80178 |
80444 |
+ |
PL556 |
Unspecified |
| scaffold5549 |
81108 |
82623 |
- |
Copia-25_BRa-I |
LTR/Copia |
| scaffold5549 |
83158 |
84041 |
- |
Copia-25_BRa-I |
LTR/Copia |
| scaffold5549 |
84154 |
84556 |
- |
Copia-25_BRa-I |
LTR/Copia |
| scaffold5549 |
84610 |
85386 |
- |
TY1_Copia |
TY1_Copia(TransposonPSI) |
| scaffold5549 |
84826 |
84992 |
- |
Copia-25_BRa-I |
LTR/Copia |
| scaffold5549 |
86934 |
87353 |
+ |
RS123 |
Unspecified |
| scaffold5549 |
88441 |
88478 |
+ |
A-rich |
Low_complexity |
| scaffold5549 |
88918 |
89113 |
+ |
(CAGTT)n |
Simple_repeat |
| scaffold5549 |
89721 |
89753 |
+ |
G-rich |
Low_complexity |
| scaffold5549 |
89977 |
90128 |
- |
RS7374 |
Unspecified |
| scaffold5549 |
90021 |
90144 |
+ |
RS11189 |
Unspecified |
| scaffold5549 |
96095 |
96123 |
+ |
(T)n |
Simple_repeat |
| scaffold5549 |
96429 |
96501 |
+ |
(T)n |
Simple_repeat |
| scaffold5549 |
96922 |
96941 |
+ |
(T)n |
Simple_repeat |
| scaffold5549 |
97496 |
97533 |
+ |
(T)n |
Simple_repeat |
| scaffold5549 |
97536 |
97607 |
+ |
(TTA)n |
Simple_repeat |
| scaffold5549 |
99321 |
99511 |
+ |
RS128 |
Unspecified |
| scaffold5549 |
99551 |
99763 |
- |
RS18 |
Unspecified |
| scaffold5549 |
108207 |
108247 |
+ |
(ATTTCA)n |
Simple_repeat |
| scaffold5549 |
111772 |
111812 |
+ |
(TTTA)n |
Simple_repeat |
| scaffold5549 |
112984 |
113165 |
+ |
RS79 |
Unspecified |
| scaffold5549 |
113262 |
113378 |
+ |
(TTTCA)n |
Simple_repeat |
| scaffold5549 |
113492 |
113607 |
+ |
(TTTCA)n |
Simple_repeat |
| scaffold5549 |
113769 |
114051 |
+ |
RS13359 |
Unspecified |
| scaffold5549 |
114079 |
114259 |
+ |
(TCA)n |
Simple_repeat |
| scaffold5549 |
114659 |
114689 |
+ |
(GT)n |
Simple_repeat |