scaffold5557 Repeat List
| genome |
start |
end |
strand |
repeat-name |
repeat-class |
| scaffold5557 |
444 |
489 |
+ |
Copia25-PTR_I-int |
LTR/Copia |
| scaffold5557 |
909 |
982 |
+ |
PL181 |
Unspecified |
| scaffold5557 |
1052 |
1435 |
- |
RS446 |
Unspecified |
| scaffold5557 |
1487 |
1768 |
- |
RS11316 |
Unspecified |
| scaffold5557 |
1944 |
1965 |
+ |
(GTA)n |
Simple_repeat |
| scaffold5557 |
1966 |
2000 |
+ |
(TAA)n |
Simple_repeat |
| scaffold5557 |
2016 |
2214 |
+ |
RS2190 |
Unspecified |
| scaffold5557 |
2207 |
2340 |
+ |
RS3270 |
Unspecified |
| scaffold5557 |
2661 |
2698 |
+ |
(TTTCTC)n |
Simple_repeat |
| scaffold5557 |
5183 |
6549 |
+ |
Gypsy-52_Mad-I |
LTR/Gypsy |
| scaffold5557 |
6572 |
8104 |
+ |
gypsy |
gypsy(TransposonPSI) |
| scaffold5557 |
7209 |
7898 |
+ |
Gypsy3-VV_I-int |
LTR/Gypsy |
| scaffold5557 |
8279 |
8347 |
+ |
ATGP5A_I-int |
LTR/Gypsy |
| scaffold5557 |
8348 |
8374 |
+ |
Copia-90_Mad-I |
LTR/Copia |
| scaffold5557 |
8647 |
8762 |
+ |
RS314 |
Unspecified |
| scaffold5557 |
8678 |
8915 |
+ |
RS13104 |
Unspecified |
| scaffold5557 |
12864 |
12901 |
+ |
(TTTCTC)n |
Simple_repeat |
| scaffold5557 |
13104 |
13382 |
+ |
RS3270 |
Unspecified |
| scaffold5557 |
13481 |
13894 |
+ |
(AT)n |
Simple_repeat |
| scaffold5557 |
13852 |
13894 |
+ |
(AT)n |
Simple_repeat |
| scaffold5557 |
14367 |
14620 |
+ |
RS7367 |
Unspecified |
| scaffold5557 |
15095 |
15654 |
+ |
RS325 |
Unspecified |
| scaffold5557 |
15660 |
15786 |
- |
RS546 |
Unspecified |
| scaffold5557 |
16493 |
16535 |
+ |
A-rich |
Low_complexity |
| scaffold5557 |
16859 |
16905 |
+ |
(AAATAAA)n |
Simple_repeat |
| scaffold5557 |
19394 |
19470 |
+ |
A-rich |
Low_complexity |
| scaffold5557 |
26198 |
26237 |
+ |
(AAAT)n |
Simple_repeat |
| scaffold5557 |
26808 |
27102 |
+ |
PL124 |
Unspecified |
| scaffold5557 |
29410 |
29434 |
+ |
(A)n |
Simple_repeat |
| scaffold5557 |
29516 |
29915 |
- |
RS2626 |
Unspecified |
| scaffold5557 |
30092 |
30675 |
+ |
PL825 |
Unspecified |
| scaffold5557 |
30926 |
30964 |
+ |
(A)n |
Simple_repeat |
| scaffold5557 |
31234 |
31465 |
- |
PL714 |
Unspecified |
| scaffold5557 |
33002 |
33025 |
+ |
(T)n |
Simple_repeat |
| scaffold5557 |
34851 |
35125 |
+ |
ATHILA-5_SBi-I |
LTR/Gypsy |
| scaffold5557 |
36968 |
37014 |
+ |
A-rich |
Low_complexity |
| scaffold5557 |
37584 |
37620 |
+ |
WHAM2_TM-int |
LTR/Gypsy |
| scaffold5557 |
37956 |
37992 |
+ |
(CCGG)n |
Simple_repeat |
| scaffold5557 |
38222 |
38278 |
+ |
(TTA)n |
Simple_repeat |
| scaffold5557 |
38796 |
38889 |
- |
RS101 |
Unspecified |
| scaffold5557 |
40269 |
40340 |
+ |
(ATATAC)n |
Simple_repeat |
| scaffold5557 |
40572 |
40606 |
+ |
(TTAA)n |
Simple_repeat |
| scaffold5557 |
41031 |
41069 |
+ |
(ATAATAG)n |
Simple_repeat |
| scaffold5557 |
41308 |
41322 |
+ |
(GGTCC)n |
Simple_repeat |
| scaffold5557 |
41323 |
41367 |
+ |
(ACCGG)n |
Simple_repeat |
| scaffold5557 |
41368 |
41392 |
+ |
(GGTCC)n |
Simple_repeat |
| scaffold5557 |
41474 |
41615 |
+ |
(TCCGG)n |
Simple_repeat |
| scaffold5557 |
41718 |
41764 |
+ |
(TTCATG)n |
Simple_repeat |
| scaffold5557 |
42237 |
42278 |
+ |
(TTAAGAA)n |
Simple_repeat |
| scaffold5557 |
42694 |
42782 |
- |
Gypsy-72-LTR_ZM |
LTR/Gypsy |
| scaffold5557 |
42962 |
43298 |
+ |
PL618 |
Unspecified |
| scaffold5557 |
43299 |
44748 |
+ |
RS1900 |
Unspecified |
| scaffold5557 |
44733 |
45349 |
+ |
RS75 |
Unspecified |
| scaffold5557 |
44804 |
45719 |
+ |
RS245 |
Unspecified |
| scaffold5557 |
45717 |
46051 |
- |
RS2939 |
Unspecified |
| scaffold5557 |
46137 |
46180 |
+ |
(T)n |
Simple_repeat |
| scaffold5557 |
46417 |
46558 |
- |
PL296 |
Unspecified |
| scaffold5557 |
46796 |
46822 |
+ |
(A)n |
Simple_repeat |
| scaffold5557 |
47299 |
47362 |
+ |
(T)n |
Simple_repeat |
| scaffold5557 |
48314 |
48400 |
- |
RS573 |
Unspecified |
| scaffold5557 |
48579 |
48617 |
+ |
(GT)n |
Simple_repeat |
| scaffold5557 |
48631 |
48665 |
+ |
(T)n |
Simple_repeat |
| scaffold5557 |
53018 |
53060 |
+ |
(TTTACAT)n |
Simple_repeat |
| scaffold5557 |
54664 |
54807 |
+ |
RS11567 |
Unspecified |
| scaffold5557 |
59177 |
59208 |
+ |
(ATGATA)n |
Simple_repeat |
| scaffold5557 |
60702 |
60742 |
+ |
(T)n |
Simple_repeat |
| scaffold5557 |
61136 |
61153 |
+ |
(T)n |
Simple_repeat |
| scaffold5557 |
62969 |
63072 |
- |
SINE2-1_TAe |
SINE/tRNA |
| scaffold5557 |
68202 |
68227 |
+ |
(TTAA)n |
Simple_repeat |
| scaffold5557 |
68842 |
68981 |
+ |
RS7515 |
Unspecified |
| scaffold5557 |
69330 |
69362 |
+ |
G-rich |
Low_complexity |
| scaffold5557 |
69471 |
69714 |
+ |
RS4 |
Unspecified |
| scaffold5557 |
73336 |
73471 |
+ |
RS15130 |
Unspecified |
| scaffold5557 |
78235 |
78259 |
+ |
(A)n |
Simple_repeat |
| scaffold5557 |
79321 |
79374 |
+ |
(TCAATCA)n |
Simple_repeat |
| scaffold5557 |
79760 |
79816 |
+ |
GA-rich |
Low_complexity |
| scaffold5557 |
79918 |
79958 |
+ |
(GGGTTT)n |
Simple_repeat |
| scaffold5557 |
80257 |
80777 |
- |
PL296 |
Unspecified |
| scaffold5557 |
80757 |
80825 |
- |
RS18280 |
Unspecified |
| scaffold5557 |
82092 |
82820 |
+ |
PL169 |
Unspecified |
| scaffold5557 |
82842 |
83028 |
+ |
(TA)n |
Simple_repeat |
| scaffold5557 |
82998 |
83028 |
+ |
(TA)n |
Simple_repeat |
| scaffold5557 |
82998 |
83434 |
+ |
(TA)n |
Simple_repeat |
| scaffold5557 |
83016 |
83434 |
+ |
RS1030 |
Unspecified |
| scaffold5557 |
83889 |
83954 |
+ |
(TATTAA)n |
Simple_repeat |
| scaffold5557 |
84140 |
84219 |
+ |
(CTGAA)n |
Simple_repeat |
| scaffold5557 |
85461 |
85514 |
+ |
(TTAAT)n |
Simple_repeat |