scaffold5589 Repeat List
| genome |
start |
end |
strand |
repeat-name |
repeat-class |
| scaffold5589 |
278 |
401 |
+ |
(TTG)n |
Simple_repeat |
| scaffold5589 |
430 |
1102 |
- |
RS1883 |
Unspecified |
| scaffold5589 |
1207 |
1256 |
+ |
(ATTT)n |
Simple_repeat |
| scaffold5589 |
1427 |
1524 |
+ |
(TTG)n |
Simple_repeat |
| scaffold5589 |
1427 |
1791 |
+ |
(TTG)n |
Simple_repeat |
| scaffold5589 |
1511 |
1791 |
+ |
RS2236 |
Unspecified |
| scaffold5589 |
2901 |
2927 |
+ |
(TA)n |
Simple_repeat |
| scaffold5589 |
3047 |
3450 |
+ |
RS4104 |
Unspecified |
| scaffold5589 |
3605 |
3716 |
+ |
(TGAACC)n |
Simple_repeat |
| scaffold5589 |
4607 |
4648 |
+ |
(TG)n |
Simple_repeat |
| scaffold5589 |
4722 |
5057 |
+ |
RS856 |
Unspecified |
| scaffold5589 |
5029 |
5412 |
- |
RS8 |
Unspecified |
| scaffold5589 |
5405 |
5465 |
+ |
RS389 |
Unspecified |
| scaffold5589 |
5463 |
5731 |
+ |
RS1760 |
Unspecified |
| scaffold5589 |
5726 |
5900 |
- |
RS8781 |
Unspecified |
| scaffold5589 |
6730 |
6841 |
+ |
Gypsy-26_VV-I |
LTR/Gypsy |
| scaffold5589 |
7609 |
7628 |
+ |
(AAT)n |
Simple_repeat |
| scaffold5589 |
7749 |
8873 |
+ |
Gypsy-26_VV-I |
LTR/Gypsy |
| scaffold5589 |
8931 |
9350 |
- |
RS4409 |
Unspecified |
| scaffold5589 |
9352 |
10896 |
+ |
gypsy |
gypsy(TransposonPSI) |
| scaffold5589 |
9389 |
10544 |
+ |
Gypsy-26_VV-I |
LTR/Gypsy |
| scaffold5589 |
10558 |
10819 |
+ |
Gypsy-30_BD-I |
LTR/Gypsy |
| scaffold5589 |
11257 |
12298 |
+ |
Gypsy-26_VV-I |
LTR/Gypsy |
| scaffold5589 |
12429 |
12523 |
+ |
Atlantys1_I-int |
LTR/Gypsy |
| scaffold5589 |
12758 |
13039 |
- |
RS6828 |
Unspecified |
| scaffold5589 |
13330 |
13744 |
- |
PL910 |
Unspecified |
| scaffold5589 |
14240 |
14964 |
- |
RS122 |
Unspecified |
| scaffold5589 |
15380 |
15413 |
+ |
A-rich |
Low_complexity |
| scaffold5589 |
16651 |
16700 |
+ |
A-rich |
Low_complexity |
| scaffold5589 |
16946 |
17028 |
+ |
(A)n |
Simple_repeat |
| scaffold5589 |
17144 |
17193 |
+ |
A-rich |
Low_complexity |
| scaffold5589 |
17439 |
17497 |
+ |
A-rich |
Low_complexity |
| scaffold5589 |
18125 |
18389 |
- |
RS10 |
Unspecified |
| scaffold5589 |
18380 |
18448 |
+ |
(GCAGCA)n |
Simple_repeat |
| scaffold5589 |
18455 |
18516 |
+ |
(CCT)n |
Simple_repeat |
| scaffold5589 |
19364 |
20816 |
- |
RS399 |
Unspecified |
| scaffold5589 |
20626 |
20909 |
- |
PL885 |
Unspecified |
| scaffold5589 |
23517 |
23911 |
- |
PL56 |
Unspecified |
| scaffold5589 |
24317 |
24358 |
+ |
Copia-10_TC-I |
LTR/Copia |
| scaffold5589 |
25447 |
25487 |
+ |
(AACA)n |
Simple_repeat |
| scaffold5589 |
27201 |
27253 |
+ |
(TTTTGTG)n |
Simple_repeat |
| scaffold5589 |
27807 |
29881 |
- |
RS934 |
Unspecified |
| scaffold5589 |
29940 |
29983 |
+ |
(CTAACAT)n |
Simple_repeat |
| scaffold5589 |
31821 |
31867 |
+ |
A-rich |
Low_complexity |
| scaffold5589 |
31821 |
32176 |
+ |
A-rich |
Low_complexity |
| scaffold5589 |
31856 |
32176 |
+ |
RS730 |
Unspecified |
| scaffold5589 |
32522 |
33184 |
- |
RS256 |
Unspecified |
| scaffold5589 |
33139 |
33932 |
- |
RS437 |
Unspecified |
| scaffold5589 |
33307 |
34281 |
- |
RS1381 |
Unspecified |
| scaffold5589 |
33935 |
34922 |
- |
RS166 |
Unspecified |
| scaffold5589 |
34612 |
35470 |
+ |
RS225 |
Unspecified |
| scaffold5589 |
35585 |
36815 |
+ |
RS672 |
Unspecified |
| scaffold5589 |
39106 |
39165 |
+ |
(TTTGTT)n |
Simple_repeat |
| scaffold5589 |
40286 |
40345 |
+ |
(TTTGTT)n |
Simple_repeat |
| scaffold5589 |
41071 |
41109 |
+ |
A-rich |
Low_complexity |
| scaffold5589 |
41600 |
42266 |
- |
MEGY-I_MT |
LTR/Gypsy |
| scaffold5589 |
42670 |
42705 |
- |
MEGY-I_MT |
LTR/Gypsy |
| scaffold5589 |
43410 |
43598 |
- |
MEGY-I_MT |
LTR/Gypsy |
| scaffold5589 |
44686 |
44719 |
+ |
(ACAA)n |
Simple_repeat |
| scaffold5589 |
45716 |
45754 |
+ |
(ATATT)n |
Simple_repeat |
| scaffold5589 |
45848 |
45884 |
+ |
(ATACA)n |
Simple_repeat |
| scaffold5589 |
46278 |
46428 |
+ |
Copia-10_TC-I |
LTR/Copia |
| scaffold5589 |
46528 |
47513 |
+ |
RS1198 |
Unspecified |
| scaffold5589 |
47597 |
47631 |
+ |
(TTTA)n |
Simple_repeat |
| scaffold5589 |
48227 |
48281 |
+ |
(TATAA)n |
Simple_repeat |
| scaffold5589 |
49470 |
49536 |
+ |
(TA)n |
Simple_repeat |
| scaffold5589 |
49572 |
49613 |
+ |
(AATAAC)n |
Simple_repeat |
| scaffold5589 |
49614 |
49659 |
+ |
A-rich |
Low_complexity |
| scaffold5589 |
49669 |
50111 |
- |
PL580 |
Unspecified |
| scaffold5589 |
50251 |
50303 |
+ |
(ATATT)n |
Simple_repeat |
| scaffold5589 |
50387 |
50419 |
+ |
(AATTAT)n |
Simple_repeat |
| scaffold5589 |
50808 |
50844 |
+ |
(TTAA)n |
Simple_repeat |
| scaffold5589 |
51333 |
51370 |
+ |
(ATATAG)n |
Simple_repeat |
| scaffold5589 |
51723 |
51770 |
+ |
A-rich |
Low_complexity |
| scaffold5589 |
52006 |
52034 |
+ |
(TAAA)n |
Simple_repeat |
| scaffold5589 |
52064 |
52123 |
+ |
(TGGATC)n |
Simple_repeat |
| scaffold5589 |
52543 |
52630 |
+ |
A-rich |
Low_complexity |
| scaffold5589 |
53060 |
53100 |
+ |
(T)n |
Simple_repeat |
| scaffold5589 |
53289 |
53329 |
+ |
A-rich |
Low_complexity |
| scaffold5589 |
54000 |
54036 |
+ |
(TCCCGAC)n |
Simple_repeat |
| scaffold5589 |
54610 |
55066 |
+ |
Gypsy9-VV_I-int |
LTR/Gypsy |
| scaffold5589 |
55523 |
55791 |
+ |
Monkey_MA |
LTR/Gypsy |
| scaffold5589 |
56984 |
57025 |
+ |
(CGAGTCC)n |
Simple_repeat |
| scaffold5589 |
57143 |
57846 |
+ |
RS228 |
Unspecified |
| scaffold5589 |
57249 |
57848 |
- |
PL459 |
Unspecified |
| scaffold5589 |
58633 |
59205 |
- |
TY1_Copia |
TY1_Copia(TransposonPSI) |
| scaffold5589 |
58636 |
59011 |
- |
Copia-13_SB-I |
LTR/Copia |
| scaffold5589 |
59335 |
59550 |
+ |
PL619 |
Unspecified |
| scaffold5589 |
60076 |
60355 |
+ |
RS167 |
Unspecified |
| scaffold5589 |
60947 |
61009 |
+ |
A-rich |
Low_complexity |
| scaffold5589 |
61628 |
61936 |
+ |
RS873 |
Unspecified |
| scaffold5589 |
62383 |
62425 |
+ |
A-rich |
Low_complexity |
| scaffold5589 |
65486 |
65703 |
- |
LTR-1_SBi-LTR |
LTR |
| scaffold5589 |
67196 |
67434 |
+ |
LTR2-ZM_LTR |
LTR |
| scaffold5589 |
68175 |
68224 |
+ |
(CGTTTTTT)n |
Simple_repeat |
| scaffold5589 |
68535 |
68688 |
- |
RS2202 |
Unspecified |
| scaffold5589 |
68598 |
68768 |
- |
PL827 |
Unspecified |
| scaffold5589 |
68693 |
68865 |
- |
PL827 |
Unspecified |
| scaffold5589 |
68773 |
69076 |
- |
RS1094 |
Unspecified |
| scaffold5589 |
69332 |
69640 |
- |
ATCopia27_I-int |
LTR/Copia |
| scaffold5589 |
69545 |
69640 |
- |
ATCopia27_I-int |
LTR/Copia |
| scaffold5589 |
69722 |
70656 |
- |
Gypsy-38_Mad-I |
LTR/Gypsy |
| scaffold5589 |
71329 |
73275 |
- |
gypsy |
gypsy(TransposonPSI) |
| scaffold5589 |
71349 |
72702 |
- |
Gypsy-3_Pru-I |
LTR/Gypsy |
| scaffold5589 |
74977 |
75024 |
- |
PL571 |
Unspecified |
| scaffold5589 |
75040 |
75311 |
- |
PL234 |
Unspecified |
| scaffold5589 |
75716 |
75782 |
+ |
(AAT)n |
Simple_repeat |
| scaffold5589 |
76100 |
76137 |
+ |
A-rich |
Low_complexity |
| scaffold5589 |
76233 |
76284 |
- |
RS4969 |
Unspecified |
| scaffold5589 |
76299 |
76397 |
- |
RS4969 |
Unspecified |
| scaffold5589 |
76588 |
76611 |
+ |
(A)n |
Simple_repeat |
| scaffold5589 |
78873 |
79229 |
- |
RS12192 |
Unspecified |
| scaffold5589 |
79276 |
80316 |
- |
COP18_I_MT-int |
LTR/Copia |
| scaffold5589 |
79276 |
80447 |
- |
COP18_I_MT-int |
LTR/Copia |
| scaffold5589 |
80282 |
80447 |
- |
RS696 |
Unspecified |
| scaffold5589 |
82208 |
83386 |
+ |
TY1_Copia |
TY1_Copia(TransposonPSI) |
| scaffold5589 |
82263 |
82303 |
+ |
A-rich |
Low_complexity |