scaffold5629 Repeat List
| genome |
start |
end |
strand |
repeat-name |
repeat-class |
| scaffold5629 |
150 |
174 |
+ |
(TTC)n |
Simple_repeat |
| scaffold5629 |
2585 |
2611 |
+ |
(GAGTC)n |
Simple_repeat |
| scaffold5629 |
4386 |
5012 |
- |
PL318 |
Unspecified |
| scaffold5629 |
5472 |
5730 |
- |
Copia-101_Mad-I |
LTR/Copia |
| scaffold5629 |
5913 |
5963 |
+ |
A-rich |
Low_complexity |
| scaffold5629 |
5964 |
5973 |
+ |
(AATTA)n |
Simple_repeat |
| scaffold5629 |
6523 |
6588 |
+ |
(A)n |
Simple_repeat |
| scaffold5629 |
8316 |
9230 |
- |
LINE1I_MT |
LINE/L1 |
| scaffold5629 |
9918 |
9969 |
+ |
(ATTA)n |
Simple_repeat |
| scaffold5629 |
10061 |
10095 |
+ |
(TTTGT)n |
Simple_repeat |
| scaffold5629 |
10330 |
10349 |
+ |
(A)n |
Simple_repeat |
| scaffold5629 |
11800 |
12010 |
- |
LINE1I_MT |
LINE/L1 |
| scaffold5629 |
13343 |
13384 |
+ |
(GA)n |
Simple_repeat |
| scaffold5629 |
13401 |
13426 |
+ |
(A)n |
Simple_repeat |
| scaffold5629 |
13524 |
13550 |
+ |
(CAT)n |
Simple_repeat |
| scaffold5629 |
14194 |
14558 |
+ |
RS8 |
Unspecified |
| scaffold5629 |
14659 |
14699 |
+ |
A-rich |
Low_complexity |
| scaffold5629 |
15965 |
16208 |
+ |
RS4 |
Unspecified |
| scaffold5629 |
16565 |
16827 |
+ |
RS365 |
Unspecified |
| scaffold5629 |
18674 |
18705 |
+ |
(TTCCTT)n |
Simple_repeat |
| scaffold5629 |
18811 |
18887 |
+ |
(ACTACA)n |
Simple_repeat |
| scaffold5629 |
18999 |
19023 |
+ |
(TACACAA)n |
Simple_repeat |
| scaffold5629 |
19024 |
19091 |
+ |
(ACA)n |
Simple_repeat |
| scaffold5629 |
19191 |
19229 |
+ |
(CTTCTT)n |
Simple_repeat |
| scaffold5629 |
19406 |
20066 |
- |
PL919 |
Unspecified |
| scaffold5629 |
19834 |
19889 |
+ |
(AT)n |
Simple_repeat |
| scaffold5629 |
20070 |
20140 |
- |
PL334 |
Unspecified |
| scaffold5629 |
20141 |
20277 |
- |
PL919 |
Unspecified |
| scaffold5629 |
20447 |
20509 |
+ |
(TTAT)n |
Simple_repeat |
| scaffold5629 |
20682 |
20754 |
+ |
A-rich |
Low_complexity |
| scaffold5629 |
21486 |
21581 |
+ |
(ATACGA)n |
Simple_repeat |
| scaffold5629 |
21876 |
21917 |
+ |
(TTA)n |
Simple_repeat |
| scaffold5629 |
22525 |
23908 |
- |
RS14 |
Unspecified |
| scaffold5629 |
24899 |
24967 |
+ |
RS3999 |
Unspecified |
| scaffold5629 |
25339 |
25398 |
+ |
(AACAA)n |
Simple_repeat |
| scaffold5629 |
26031 |
26074 |
+ |
(ATAAGT)n |
Simple_repeat |
| scaffold5629 |
26093 |
26149 |
+ |
(AATTTAT)n |
Simple_repeat |
| scaffold5629 |
26809 |
27845 |
- |
PL891 |
Unspecified |
| scaffold5629 |
26994 |
28282 |
- |
PL405 |
Unspecified |
| scaffold5629 |
28769 |
28975 |
+ |
RS13321 |
Unspecified |
| scaffold5629 |
29332 |
31752 |
+ |
TY1_Copia |
TY1_Copia(TransposonPSI) |
| scaffold5629 |
29414 |
31716 |
+ |
RIRE1_I-int |
LTR/Copia |
| scaffold5629 |
31769 |
32605 |
+ |
Copia25-PTR_I-int |
LTR/Copia |
| scaffold5629 |
31769 |
33041 |
+ |
Copia25-PTR_I-int |
LTR/Copia |
| scaffold5629 |
32518 |
33041 |
- |
PL816 |
Unspecified |
| scaffold5629 |
36329 |
36543 |
- |
RS1415 |
Unspecified |
| scaffold5629 |
36634 |
36663 |
+ |
(ACCCGA)n |
Simple_repeat |
| scaffold5629 |
37121 |
37194 |
+ |
A-rich |
Low_complexity |
| scaffold5629 |
37854 |
38083 |
- |
Gypsy-72-LTR_ZM |
LTR/Gypsy |
| scaffold5629 |
37854 |
38508 |
- |
Gypsy-72-LTR_ZM |
LTR/Gypsy |
| scaffold5629 |
38012 |
38508 |
+ |
RS245 |
Unspecified |
| scaffold5629 |
38539 |
38663 |
+ |
(TTCAG)n |
Simple_repeat |
| scaffold5629 |
38685 |
38837 |
+ |
(TAT)n |
Simple_repeat |
| scaffold5629 |
39197 |
39274 |
+ |
tRNASAT-1_ZM |
Satellite |
| scaffold5629 |
39354 |
39504 |
- |
RS2381 |
Unspecified |
| scaffold5629 |
39479 |
39641 |
- |
RS14955 |
Unspecified |
| scaffold5629 |
39963 |
40235 |
- |
RS96 |
Unspecified |
| scaffold5629 |
42255 |
42527 |
- |
RS970 |
Unspecified |
| scaffold5629 |
42852 |
42900 |
+ |
(TTATTTT)n |
Simple_repeat |
| scaffold5629 |
43282 |
43548 |
- |
RS10 |
Unspecified |
| scaffold5629 |
43685 |
43703 |
+ |
(A)n |
Simple_repeat |
| scaffold5629 |
44998 |
45219 |
- |
RS2008 |
Unspecified |
| scaffold5629 |
47039 |
47100 |
- |
RS795 |
Unspecified |
| scaffold5629 |
48017 |
48118 |
- |
PL714 |
Unspecified |
| scaffold5629 |
48501 |
48532 |
+ |
GA-rich |
Low_complexity |
| scaffold5629 |
48950 |
48974 |
+ |
(T)n |
Simple_repeat |
| scaffold5629 |
49064 |
49104 |
+ |
(TTTG)n |
Simple_repeat |
| scaffold5629 |
49283 |
49571 |
- |
PL522 |
Unspecified |
| scaffold5629 |
49578 |
50925 |
- |
RS51 |
Unspecified |
| scaffold5629 |
53229 |
53322 |
+ |
(GT)n |
Simple_repeat |
| scaffold5629 |
53841 |
53872 |
+ |
G-rich |
Low_complexity |
| scaffold5629 |
54422 |
54465 |
+ |
(TTGTTT)n |
Simple_repeat |
| scaffold5629 |
55637 |
56731 |
- |
RS3063 |
Unspecified |
| scaffold5629 |
56176 |
56959 |
- |
PL921 |
Unspecified |
| scaffold5629 |
56499 |
57938 |
- |
PL554 |
Unspecified |
| scaffold5629 |
58080 |
58121 |
+ |
(TTTGT)n |
Simple_repeat |
| scaffold5629 |
58627 |
58696 |
- |
Gypsy-9_Mad-I |
LTR/Gypsy |
| scaffold5629 |
61920 |
62081 |
+ |
PL960 |
Unspecified |
| scaffold5629 |
62034 |
62136 |
+ |
RS3631 |
Unspecified |
| scaffold5629 |
62078 |
62275 |
+ |
RS8039 |
Unspecified |
| scaffold5629 |
64134 |
65334 |
+ |
PL956 |
Unspecified |
| scaffold5629 |
64393 |
66207 |
- |
RS51 |
Unspecified |
| scaffold5629 |
65318 |
66975 |
- |
RS254 |
Unspecified |
| scaffold5629 |
66976 |
67175 |
+ |
PL5 |
Unspecified |
| scaffold5629 |
67195 |
67247 |
+ |
(AATAA)n |
Simple_repeat |
| scaffold5629 |
67670 |
67706 |
+ |
(ACAATC)n |
Simple_repeat |
| scaffold5629 |
68355 |
68428 |
+ |
(ACACAC)n |
Simple_repeat |
| scaffold5629 |
68802 |
68843 |
+ |
(ACA)n |
Simple_repeat |
| scaffold5629 |
69139 |
69177 |
+ |
(ATGGAG)n |
Simple_repeat |
| scaffold5629 |
69178 |
69214 |
+ |
(GAAT)n |
Simple_repeat |
| scaffold5629 |
69215 |
69225 |
+ |
(ATGGAG)n |
Simple_repeat |
| scaffold5629 |
69655 |
69720 |
- |
Gypsy-52_BD-I |
LTR/Gypsy |