scaffold5640 Repeat List
| genome |
start |
end |
strand |
repeat-name |
repeat-class |
| scaffold5640 |
2 |
367 |
+ |
RS4278 |
Unspecified |
| scaffold5640 |
2 |
469 |
+ |
RS756 |
Unspecified |
| scaffold5640 |
302 |
928 |
- |
RS1210 |
Unspecified |
| scaffold5640 |
929 |
1402 |
+ |
(GGCCGTG)n |
Simple_repeat |
| scaffold5640 |
1367 |
1402 |
+ |
(GGCCGTG)n |
Simple_repeat |
| scaffold5640 |
1548 |
2197 |
+ |
PIGY-I_PS |
LTR/Gypsy |
| scaffold5640 |
2400 |
2436 |
+ |
(GAT)n |
Simple_repeat |
| scaffold5640 |
2670 |
2728 |
+ |
(TTTTCAT)n |
Simple_repeat |
| scaffold5640 |
3450 |
3504 |
+ |
A-rich |
Low_complexity |
| scaffold5640 |
5089 |
5121 |
+ |
(GACACGG)n |
Simple_repeat |
| scaffold5640 |
5461 |
6166 |
- |
RS1009 |
Unspecified |
| scaffold5640 |
6954 |
7625 |
+ |
TY1_Copia |
TY1_Copia(TransposonPSI) |
| scaffold5640 |
7467 |
7538 |
+ |
Copia-16_CP-I |
LTR/Copia |
| scaffold5640 |
7968 |
8082 |
+ |
Copia-16_CP-I |
LTR/Copia |
| scaffold5640 |
8176 |
8279 |
+ |
Copia-16_CP-I |
LTR/Copia |
| scaffold5640 |
8504 |
9349 |
+ |
Copia-16_CP-I |
LTR/Copia |
| scaffold5640 |
9763 |
11364 |
+ |
Copia-16_CP-I |
LTR/Copia |
| scaffold5640 |
12455 |
12534 |
+ |
(TGT)n |
Simple_repeat |
| scaffold5640 |
12898 |
13214 |
- |
RS210 |
Unspecified |
| scaffold5640 |
13454 |
13482 |
+ |
(AATA)n |
Simple_repeat |
| scaffold5640 |
15533 |
15800 |
- |
RS106 |
Unspecified |
| scaffold5640 |
15843 |
15900 |
+ |
(AAT)n |
Simple_repeat |
| scaffold5640 |
17290 |
17318 |
+ |
(TAAGT)n |
Simple_repeat |
| scaffold5640 |
17389 |
17502 |
- |
RS7601 |
Unspecified |
| scaffold5640 |
17406 |
17526 |
+ |
RS5437 |
Unspecified |
| scaffold5640 |
18566 |
19020 |
+ |
PL352 |
Unspecified |
| scaffold5640 |
19018 |
19811 |
- |
RS490 |
Unspecified |
| scaffold5640 |
20081 |
20117 |
+ |
A-rich |
Low_complexity |
| scaffold5640 |
20483 |
20577 |
+ |
(TAT)n |
Simple_repeat |
| scaffold5640 |
20570 |
20787 |
+ |
RS1663 |
Unspecified |
| scaffold5640 |
22682 |
22762 |
+ |
(TAATTT)n |
Simple_repeat |
| scaffold5640 |
22732 |
22781 |
+ |
A-rich |
Low_complexity |
| scaffold5640 |
23305 |
23406 |
- |
RS1 |
Unspecified |
| scaffold5640 |
24291 |
24333 |
+ |
(T)n |
Simple_repeat |
| scaffold5640 |
24439 |
24484 |
- |
RS18371 |
Unspecified |
| scaffold5640 |
25119 |
25183 |
- |
Gypsy-92_ZM-I |
LTR/Gypsy |
| scaffold5640 |
25385 |
25420 |
+ |
GA-rich |
Low_complexity |
| scaffold5640 |
25696 |
25788 |
+ |
(ATA)n |
Simple_repeat |
| scaffold5640 |
25815 |
25825 |
+ |
(ATATT)n |
Simple_repeat |
| scaffold5640 |
25826 |
25894 |
+ |
(TAT)n |
Simple_repeat |
| scaffold5640 |
26307 |
26476 |
+ |
RS3586 |
Unspecified |
| scaffold5640 |
27076 |
27186 |
- |
RS7333 |
Unspecified |
| scaffold5640 |
27207 |
27257 |
+ |
(AATAA)n |
Simple_repeat |
| scaffold5640 |
27778 |
27807 |
+ |
(CAAT)n |
Simple_repeat |
| scaffold5640 |
28327 |
28781 |
- |
RS3153 |
Unspecified |
| scaffold5640 |
30073 |
30123 |
+ |
(AATAA)n |
Simple_repeat |
| scaffold5640 |
30612 |
30668 |
+ |
A-rich |
Low_complexity |
| scaffold5640 |
31168 |
31196 |
+ |
(CAAT)n |
Simple_repeat |
| scaffold5640 |
33069 |
33127 |
+ |
(TATTA)n |
Simple_repeat |
| scaffold5640 |
33374 |
33448 |
+ |
A-rich |
Low_complexity |
| scaffold5640 |
33449 |
33512 |
+ |
(TAA)n |
Simple_repeat |
| scaffold5640 |
34779 |
34823 |
+ |
RS18371 |
Unspecified |
| scaffold5640 |
34806 |
34976 |
+ |
RS17860 |
Unspecified |
| scaffold5640 |
35299 |
35562 |
+ |
RS10 |
Unspecified |
| scaffold5640 |
35519 |
35569 |
+ |
RS17600 |
Unspecified |
| scaffold5640 |
37853 |
38025 |
- |
RS11991 |
Unspecified |
| scaffold5640 |
38019 |
38092 |
+ |
(A)n |
Simple_repeat |
| scaffold5640 |
38092 |
38256 |
+ |
RS549 |
Unspecified |
| scaffold5640 |
39359 |
39531 |
- |
RS11991 |
Unspecified |
| scaffold5640 |
39525 |
39604 |
+ |
(A)n |
Simple_repeat |
| scaffold5640 |
40247 |
40467 |
+ |
RS22 |
Unspecified |
| scaffold5640 |
41816 |
42229 |
+ |
RS6312 |
Unspecified |
| scaffold5640 |
42636 |
42687 |
+ |
(TTTCTC)n |
Simple_repeat |
| scaffold5640 |
47505 |
47751 |
- |
RS4 |
Unspecified |
| scaffold5640 |
48121 |
48463 |
- |
RS63 |
Unspecified |
| scaffold5640 |
48480 |
48641 |
- |
RS63 |
Unspecified |
| scaffold5640 |
50459 |
50540 |
- |
RS162 |
Unspecified |
| scaffold5640 |
51403 |
51428 |
+ |
(A)n |
Simple_repeat |
| scaffold5640 |
55648 |
55708 |
- |
PIGY-I_PS |
LTR/Gypsy |
| scaffold5640 |
61115 |
61367 |
- |
RS9712 |
Unspecified |
| scaffold5640 |
61228 |
61435 |
- |
RS12297 |
Unspecified |
| scaffold5640 |
61997 |
62280 |
- |
LTR2-ZM_LTR |
LTR |
| scaffold5640 |
62461 |
62522 |
+ |
(TTTTA)n |
Simple_repeat |
| scaffold5640 |
63222 |
63266 |
- |
PL663 |
Unspecified |
| scaffold5640 |
63282 |
63631 |
- |
RS214 |
Unspecified |
| scaffold5640 |
63416 |
63872 |
- |
RS831 |
Unspecified |
| scaffold5640 |
63667 |
64390 |
- |
RS214 |
Unspecified |
| scaffold5640 |
65087 |
65229 |
+ |
RS79 |
Unspecified |
| scaffold5640 |
65773 |
65822 |
+ |
(ATATTTT)n |
Simple_repeat |
| scaffold5640 |
66767 |
66862 |
+ |
RS4475 |
Unspecified |
| scaffold5640 |
67537 |
67581 |
+ |
(TAATT)n |
Simple_repeat |
| scaffold5640 |
67646 |
67681 |
+ |
(AGTGTGA)n |
Simple_repeat |
| scaffold5640 |
68597 |
68663 |
+ |
RS15316 |
Unspecified |
| scaffold5640 |
68654 |
69364 |
+ |
RS57 |
Unspecified |
| scaffold5640 |
69362 |
69566 |
- |
RS28 |
Unspecified |
| scaffold5640 |
69565 |
70120 |
+ |
RS57 |
Unspecified |
| scaffold5640 |
69716 |
70893 |
- |
RS403 |
Unspecified |
| scaffold5640 |
70929 |
70988 |
+ |
(TATT)n |
Simple_repeat |
| scaffold5640 |
71309 |
72077 |
+ |
PL344 |
Unspecified |
| scaffold5640 |
71888 |
72101 |
+ |
RS2766 |
Unspecified |
| scaffold5640 |
72171 |
72207 |
+ |
(CAGAGGA)n |
Simple_repeat |
| scaffold5640 |
72279 |
72417 |
- |
RS171 |
Unspecified |
| scaffold5640 |
72295 |
72443 |
+ |
RS4933 |
Unspecified |
| scaffold5640 |
72613 |
72673 |
+ |
GA-rich |
Low_complexity |
| scaffold5640 |
72731 |
72832 |
+ |
(GTT)n |
Simple_repeat |
| scaffold5640 |
73447 |
73504 |
+ |
(AATTA)n |
Simple_repeat |
| scaffold5640 |
73531 |
73652 |
+ |
RS38 |
Unspecified |
| scaffold5640 |
73775 |
74025 |
- |
RS458 |
Unspecified |
| scaffold5640 |
74156 |
74223 |
+ |
(AATAATG)n |
Simple_repeat |
| scaffold5640 |
74385 |
74422 |
+ |
(ATTTAAT)n |
Simple_repeat |
| scaffold5640 |
75715 |
75753 |
+ |
(TAT)n |
Simple_repeat |
| scaffold5640 |
76162 |
76223 |
+ |
(TAATAA)n |
Simple_repeat |
| scaffold5640 |
76424 |
76485 |
+ |
(AATTA)n |
Simple_repeat |
| scaffold5640 |
76762 |
76817 |
+ |
A-rich |
Low_complexity |
| scaffold5640 |
76898 |
76935 |
+ |
(ATTAT)n |
Simple_repeat |
| scaffold5640 |
77258 |
77359 |
- |
PL296 |
Unspecified |
| scaffold5640 |
77313 |
77492 |
- |
PL296 |
Unspecified |
| scaffold5640 |
77488 |
77730 |
+ |
RS1166 |
Unspecified |
| scaffold5640 |
77809 |
77911 |
- |
Helitron1 |
RC/Helitron |
| scaffold5640 |
77912 |
78061 |
+ |
PL859 |
Unspecified |
| scaffold5640 |
78788 |
78991 |
+ |
RS414 |
Unspecified |
| scaffold5640 |
79008 |
79048 |
+ |
(TCTGAAGTTT)n |
Simple_repeat |
| scaffold5640 |
79065 |
79091 |
+ |
(ATT)n |
Simple_repeat |
| scaffold5640 |
79112 |
79372 |
- |
RS10825 |
Unspecified |
| scaffold5640 |
80347 |
81873 |
- |
LINE |
LINE(TransposonPSI) |
| scaffold5640 |
80556 |
80670 |
- |
L1-5_Mad |
LINE/L1 |
| scaffold5640 |
80683 |
80898 |
- |
L1-5_STu |
LINE/L1 |
| scaffold5640 |
82924 |
83022 |
+ |
(TAT)n |
Simple_repeat |
| scaffold5640 |
83443 |
83715 |
+ |
(TAT)n |
Simple_repeat |
| scaffold5640 |
83657 |
83715 |
+ |
(TAT)n |
Simple_repeat |
| scaffold5640 |
83736 |
83812 |
+ |
(ATCTGAAGTT)n |
Simple_repeat |
| scaffold5640 |
84027 |
84075 |
+ |
(TTAAT)n |
Simple_repeat |
| scaffold5640 |
84208 |
84257 |
+ |
(ACTCAT)n |
Simple_repeat |
| scaffold5640 |
84606 |
84782 |
+ |
RS1261 |
Unspecified |
| scaffold5640 |
84819 |
84868 |
+ |
RS11245 |
Unspecified |
| scaffold5640 |
84932 |
85055 |
- |
RS401 |
Unspecified |
| scaffold5640 |
85227 |
85278 |
+ |
Gypsy-48_Mad-I |
LTR/Gypsy |
| scaffold5640 |
86001 |
86030 |
+ |
A-rich |
Low_complexity |
| scaffold5640 |
86044 |
86088 |
+ |
GA-rich |
Low_complexity |
| scaffold5640 |
86930 |
88097 |
+ |
RS220 |
Unspecified |
| scaffold5640 |
88099 |
88457 |
- |
Copia-65_Mad-I |
LTR/Copia |
| scaffold5640 |
90796 |
90813 |
+ |
(A)n |
Simple_repeat |
| scaffold5640 |
91004 |
91035 |
+ |
A-rich |
Low_complexity |
| scaffold5640 |
91929 |
91972 |
+ |
(AATATAT)n |
Simple_repeat |
| scaffold5640 |
94311 |
94388 |
+ |
A-rich |
Low_complexity |
| scaffold5640 |
95213 |
95372 |
+ |
RS1261 |
Unspecified |
| scaffold5640 |
95258 |
95403 |
+ |
RS1017 |
Unspecified |
| scaffold5640 |
95426 |
95538 |
+ |
RS11245 |
Unspecified |
| scaffold5640 |
97070 |
97168 |
+ |
EnSpm-1_GM |
DNA/CMC-EnSpm |
| scaffold5640 |
99499 |
99584 |
- |
RS8706 |
Unspecified |
| scaffold5640 |
100939 |
100966 |
+ |
(A)n |
Simple_repeat |
| scaffold5640 |
101916 |
102297 |
- |
Copia-36_Mad-I |
LTR/Copia |
| scaffold5640 |
102249 |
102297 |
- |
Copia-36_Mad-I |
LTR/Copia |
| scaffold5640 |
102298 |
102803 |
+ |
Copia25-PTR_I-int |
LTR/Copia |
| scaffold5640 |
102806 |
103154 |
+ |
Copia25-PTR_I-int |
LTR/Copia |
| scaffold5640 |
103432 |
103588 |
- |
PL911 |
Unspecified |
| scaffold5640 |
104239 |
104288 |
+ |
LTR-5_Mad |
LTR/Gypsy |
| scaffold5640 |
104246 |
104359 |
+ |
Copia-4_SL-LTR |
LTR/Copia |
| scaffold5640 |
106437 |
106486 |
+ |
LTR-5_Mad |
LTR/Gypsy |
| scaffold5640 |
106444 |
106557 |
+ |
Copia-4_SL-LTR |
LTR/Copia |
| scaffold5640 |
108576 |
108757 |
- |
PL18 |
Unspecified |
| scaffold5640 |
109308 |
109424 |
- |
RS172 |
Unspecified |
| scaffold5640 |
110361 |
110531 |
- |
RS47 |
Unspecified |
| scaffold5640 |
111051 |
111083 |
+ |
(AACTCT)n |
Simple_repeat |
| scaffold5640 |
111763 |
111825 |
+ |
(TTGAG)n |
Simple_repeat |
| scaffold5640 |
112178 |
112194 |
+ |
(GTT)n |
Simple_repeat |
| scaffold5640 |
113073 |
113122 |
- |
PL265 |
Unspecified |
| scaffold5640 |
113755 |
113807 |
+ |
(TTTAAT)n |
Simple_repeat |
| scaffold5640 |
114255 |
114322 |
+ |
(TTT)n |
Simple_repeat |
| scaffold5640 |
116086 |
116361 |
- |
RS3651 |
Unspecified |
| scaffold5640 |
117657 |
117679 |
+ |
(T)n |
Simple_repeat |
| scaffold5640 |
119049 |
119153 |
- |
EnSpm-8_STu |
DNA/CMC-EnSpm |
| scaffold5640 |
122967 |
123005 |
+ |
(ATCTAT)n |
Simple_repeat |
| scaffold5640 |
130587 |
130619 |
+ |
(A)n |
Simple_repeat |
| scaffold5640 |
136026 |
136377 |
+ |
RS704 |
Unspecified |
| scaffold5640 |
136476 |
136500 |
+ |
(TTCC)n |
Simple_repeat |
| scaffold5640 |
136592 |
136699 |
- |
RS1049 |
Unspecified |
| scaffold5640 |
137307 |
137388 |
+ |
(AATC)n |
Simple_repeat |
| scaffold5640 |
138216 |
138258 |
+ |
(TCCA)n |
Simple_repeat |
| scaffold5640 |
138480 |
138763 |
- |
PL438 |
Unspecified |
| scaffold5640 |
139055 |
139110 |
+ |
(A)n |
Simple_repeat |
| scaffold5640 |
139333 |
139373 |
+ |
(CCATCA)n |
Simple_repeat |
| scaffold5640 |
139386 |
139433 |
+ |
(TTTTCGT)n |
Simple_repeat |
| scaffold5640 |
139477 |
139533 |
+ |
(TTCATC)n |
Simple_repeat |
| scaffold5640 |
140435 |
140462 |
+ |
(TTG)n |
Simple_repeat |
| scaffold5640 |
140751 |
140816 |
+ |
(AATTTT)n |
Simple_repeat |
| scaffold5640 |
141576 |
141656 |
- |
MuDR-15_GMa |
DNA/MULE-MuDR |
| scaffold5640 |
142713 |
143030 |
- |
RS819 |
Unspecified |
| scaffold5640 |
143837 |
143885 |
- |
MuDR-13_GM |
DNA/MULE-MuDR |
| scaffold5640 |
143917 |
144735 |
- |
MuDR_A_B |
MuDR_A_B(TransposonPSI) |
| scaffold5640 |
144617 |
144714 |
- |
MuDR-5_Mad |
DNA/MULE-MuDR |
| scaffold5640 |
146140 |
146210 |
+ |
GA-rich |
Low_complexity |
| scaffold5640 |
146306 |
146356 |
+ |
(CAACCAC)n |
Simple_repeat |
| scaffold5640 |
146489 |
146571 |
+ |
A-rich |
Low_complexity |
| scaffold5640 |
146885 |
146925 |
+ |
(AATT)n |
Simple_repeat |
| scaffold5640 |
146885 |
147191 |
+ |
(AATT)n |
Simple_repeat |
| scaffold5640 |
146915 |
147191 |
+ |
RS482 |
Unspecified |
| scaffold5640 |
147274 |
147667 |
+ |
RS482 |
Unspecified |
| scaffold5640 |
149110 |
149132 |
+ |
(A)n |
Simple_repeat |
| scaffold5640 |
149556 |
149579 |
+ |
(A)n |
Simple_repeat |
| scaffold5640 |
149584 |
149798 |
- |
hAT-17N1_ZM |
DNA/hAT-Ac |
| scaffold5640 |
150499 |
150751 |
- |
RS658 |
Unspecified |
| scaffold5640 |
150959 |
151123 |
+ |
(ATATCCG)n |
Simple_repeat |
| scaffold5640 |
151139 |
151167 |
+ |
(TCGGATA)n |
Simple_repeat |
| scaffold5640 |
151734 |
151877 |
- |
hAT-17N1_ZM |
DNA/hAT-Ac |
| scaffold5640 |
152176 |
152393 |
- |
PL631 |
Unspecified |
| scaffold5640 |
152839 |
152964 |
- |
PL268 |
Unspecified |
| scaffold5640 |
152854 |
153459 |
+ |
PL268 |
Unspecified |
| scaffold5640 |
153351 |
153472 |
- |
PL268 |
Unspecified |
| scaffold5640 |
154607 |
154635 |
+ |
A-rich |
Low_complexity |
| scaffold5640 |
154810 |
154828 |
+ |
(TTC)n |
Simple_repeat |
| scaffold5640 |
154960 |
155006 |
+ |
(T)n |
Simple_repeat |
| scaffold5640 |
159405 |
159423 |
+ |
(T)n |
Simple_repeat |
| scaffold5640 |
160017 |
160050 |
+ |
(TTGGGAC)n |
Simple_repeat |
| scaffold5640 |
160374 |
160670 |
+ |
RS3413 |
Unspecified |
| scaffold5640 |
160863 |
160895 |
+ |
(TGGGTC)n |
Simple_repeat |
| scaffold5640 |
160950 |
160969 |
+ |
(T)n |
Simple_repeat |
| scaffold5640 |
160979 |
161032 |
+ |
(TAT)n |
Simple_repeat |
| scaffold5640 |
161161 |
161182 |
+ |
(AG)n |
Simple_repeat |
| scaffold5640 |
161240 |
161275 |
+ |
RS2999 |
Unspecified |
| scaffold5640 |
161335 |
161758 |
+ |
PL352 |
Unspecified |
| scaffold5640 |
162370 |
162422 |
+ |
(AAT)n |
Simple_repeat |
| scaffold5640 |
162523 |
162569 |
+ |
(AACTAA)n |
Simple_repeat |
| scaffold5640 |
162658 |
162699 |
+ |
(GGCC)n |
Simple_repeat |
| scaffold5640 |
163026 |
163061 |
- |
PL352 |
Unspecified |
| scaffold5640 |
163922 |
164000 |
+ |
(T)n |
Simple_repeat |
| scaffold5640 |
164265 |
164302 |
+ |
A-rich |
Low_complexity |
| scaffold5640 |
164330 |
164449 |
+ |
(CTGAA)n |
Simple_repeat |
| scaffold5640 |
165065 |
165140 |
+ |
(AAAT)n |
Simple_repeat |
| scaffold5640 |
165180 |
165404 |
+ |
RS1138 |
Unspecified |
| scaffold5640 |
165955 |
165986 |
+ |
(T)n |
Simple_repeat |
| scaffold5640 |
169600 |
169758 |
+ |
RS10393 |
Unspecified |
| scaffold5640 |
169778 |
170032 |
+ |
RS13836 |
Unspecified |
| scaffold5640 |
170615 |
170656 |
+ |
(GAT)n |
Simple_repeat |
| scaffold5640 |
170677 |
170701 |
+ |
(TGATT)n |
Simple_repeat |
| scaffold5640 |
171025 |
171099 |
- |
hAT-14N2_ZM |
DNA/hAT-Tip100 |
| scaffold5640 |
172014 |
172386 |
- |
RS8622 |
Unspecified |
| scaffold5640 |
172702 |
172737 |
+ |
(AT)n |
Simple_repeat |
| scaffold5640 |
173739 |
174031 |
+ |
PL469 |
Unspecified |
| scaffold5640 |
174822 |
174865 |
+ |
(TATTT)n |
Simple_repeat |
| scaffold5640 |
175107 |
175176 |
+ |
A-rich |
Low_complexity |
| scaffold5640 |
176054 |
176078 |
+ |
(A)n |
Simple_repeat |
| scaffold5640 |
176238 |
176302 |
+ |
(T)n |
Simple_repeat |
| scaffold5640 |
176304 |
176401 |
+ |
(TAT)n |
Simple_repeat |
| scaffold5640 |
177633 |
177964 |
- |
RS12974 |
Unspecified |
| scaffold5640 |
178643 |
179098 |
- |
RS35 |
Unspecified |
| scaffold5640 |
179238 |
179491 |
+ |
(CTGAA)n |
Simple_repeat |
| scaffold5640 |
179620 |
179813 |
+ |
(TTCAG)n |
Simple_repeat |
| scaffold5640 |
179851 |
179911 |
- |
RS16967 |
Unspecified |
| scaffold5640 |
179860 |
179911 |
+ |
RS10543 |
Unspecified |
| scaffold5640 |
179913 |
180017 |
+ |
(TAT)n |
Simple_repeat |
| scaffold5640 |
180015 |
180129 |
+ |
RS112 |
Unspecified |
| scaffold5640 |
180124 |
180419 |
+ |
PL840 |
Unspecified |
| scaffold5640 |
180166 |
180460 |
+ |
RS270 |
Unspecified |
| scaffold5640 |
180554 |
181197 |
- |
RS112 |
Unspecified |
| scaffold5640 |
181186 |
181325 |
+ |
(TTA)n |
Simple_repeat |
| scaffold5640 |
181477 |
181566 |
+ |
(TAA)n |
Simple_repeat |
| scaffold5640 |
185447 |
185496 |
+ |
(CTCGA)n |
Simple_repeat |
| scaffold5640 |
188954 |
189015 |
+ |
Gypsy-10_Pru-LTR |
LTR/Gypsy |
| scaffold5640 |
190968 |
191027 |
+ |
(TCAGCA)n |
Simple_repeat |
| scaffold5640 |
191081 |
191538 |
+ |
RS564 |
Unspecified |