scaffold5643 Repeat List
genome start end strand repeat-name repeat-class
scaffold5643 12 46 + A-rich Low_complexity
scaffold5643 1150 1184 + A-rich Low_complexity
scaffold5643 1357 1435 - RS4768 Unspecified
scaffold5643 1816 1849 + (AATA)n Simple_repeat
scaffold5643 3104 3260 + RS970 Unspecified
scaffold5643 3402 3815 - PL3 Unspecified
scaffold5643 4671 4905 + (CCCGA)n Simple_repeat
scaffold5643 4883 4926 - HAT-10_Mad DNA/hAT-Ac
scaffold5643 5098 5132 + (TA)n Simple_repeat
scaffold5643 5193 5215 + (A)n Simple_repeat
scaffold5643 5679 5702 + (T)n Simple_repeat
scaffold5643 6639 6756 + A-rich Low_complexity
scaffold5643 7704 7737 + (TAATTG)n Simple_repeat
scaffold5643 11274 11322 + (AATAATA)n Simple_repeat
scaffold5643 11375 11530 - RS1186 Unspecified
scaffold5643 11541 11659 - RS4170 Unspecified
scaffold5643 12178 12337 + RS870 Unspecified
scaffold5643 12474 12717 - RS4 Unspecified
scaffold5643 12756 12787 + (A)n Simple_repeat
scaffold5643 13065 13207 - RS115 Unspecified
scaffold5643 13351 13390 + (T)n Simple_repeat
scaffold5643 14634 14844 + RS10812 Unspecified
scaffold5643 14899 15273 + RS10446 Unspecified
scaffold5643 15293 15450 - RS704 Unspecified
scaffold5643 15541 15594 - RS704 Unspecified
scaffold5643 15727 15794 + RS14769 Unspecified
scaffold5643 15929 15992 + Helitron1_ZM RC/Helitron
scaffold5643 16294 16398 + Helitron2 RC/Helitron
scaffold5643 16454 18191 + HELMET3 RC/Helitron
scaffold5643 18310 19984 + HELMET3 RC/Helitron
scaffold5643 19154 19196 + A-rich Low_complexity
scaffold5643 20458 20654 + RS973 Unspecified
scaffold5643 20690 20907 - RS172 Unspecified
scaffold5643 20905 21008 - RS306 Unspecified
scaffold5643 20916 21251 - RS306 Unspecified
scaffold5643 22406 22440 + (CCGGC)n Simple_repeat
scaffold5643 22647 22855 - RS12945 Unspecified
scaffold5643 23129 23213 + A-rich Low_complexity
scaffold5643 23557 23574 + (A)n Simple_repeat
scaffold5643 23723 23772 + (TTTTAT)n Simple_repeat
scaffold5643 23841 23887 + (GGAT)n Simple_repeat
scaffold5643 24533 24568 + (ACTTTAA)n Simple_repeat
scaffold5643 25154 25176 + (T)n Simple_repeat
scaffold5643 25268 25299 + (TTA)n Simple_repeat
scaffold5643 25738 25835 - ATRAN DNA?
scaffold5643 26189 26286 - ATRAN DNA?
scaffold5643 26658 26755 - ATRAN DNA?
scaffold5643 27109 27206 - ATRAN DNA?
scaffold5643 31218 31253 + (TTACAA)n Simple_repeat
scaffold5643 32140 32179 + A-rich Low_complexity
scaffold5643 32669 32723 + A-rich Low_complexity
scaffold5643 32924 33008 + A-rich Low_complexity
scaffold5643 33020 33099 + RS6123 Unspecified
scaffold5643 33552 34007 + RS7298 Unspecified
scaffold5643 33884 34142 + RS10103 Unspecified
scaffold5643 34295 34429 + RS14781 Unspecified
scaffold5643 34454 34603 + (GCAGACA)n Simple_repeat
scaffold5643 34616 34793 + RS10237 Unspecified
scaffold5643 35312 35350 + (TTATA)n Simple_repeat
scaffold5643 35380 35412 + A-rich Low_complexity
scaffold5643 36001 36066 + RS663 Unspecified
scaffold5643 36164 36190 + (A)n Simple_repeat
scaffold5643 36761 37023 - RS736 Unspecified
scaffold5643 37079 37451 - RS10446 Unspecified
scaffold5643 37533 37743 - RS10812 Unspecified
scaffold5643 38877 38962 + (A)n Simple_repeat
scaffold5643 39874 40420 - PL753 Unspecified
scaffold5643 40440 40594 + (CTGAA)n Simple_repeat
scaffold5643 40475 40594 + (CTGAA)n Simple_repeat
scaffold5643 40614 40741 + (AACTG)n Simple_repeat
scaffold5643 41255 41273 + (T)n Simple_repeat
scaffold5643 42401 42519 + TRAMET1 DNA/TcMar-Stowaway
scaffold5643 42734 42759 + (T)n Simple_repeat
scaffold5643 42900 42934 + A-rich Low_complexity
scaffold5643 43585 43645 - RS1581 Unspecified
scaffold5643 43914 43938 + (CATTT)n Simple_repeat
scaffold5643 43945 44056 + (TTG)n Simple_repeat
scaffold5643 44181 44211 + (TATT)n Simple_repeat
scaffold5643 44302 44406 + RS3025 Unspecified
scaffold5643 47801 47858 + (TGAATA)n Simple_repeat
scaffold5643 48002 48101 + (CTGAA)n Simple_repeat
scaffold5643 48124 48157 + (TTGAA)n Simple_repeat
scaffold5643 48160 48248 + (TGAAC)n Simple_repeat
scaffold5643 48367 49209 - RS1581 Unspecified
scaffold5643 48834 49324 + RS2850 Unspecified
scaffold5643 49359 50488 + RS940 Unspecified
scaffold5643 50507 50587 + RS1975 Unspecified
scaffold5643 50603 50683 + RS1975 Unspecified
scaffold5643 50860 51387 + RS1309 Unspecified
scaffold5643 51554 51587 + A-rich Low_complexity
scaffold5643 51618 51899 + RS600 Unspecified
scaffold5643 52436 52470 + (AATT)n Simple_repeat
scaffold5643 53359 53587 - RS6805 Unspecified
scaffold5643 53458 53739 - PL806 Unspecified
scaffold5643 54172 54479 + RS499 Unspecified
scaffold5643 54334 54513 - RS4042 Unspecified
scaffold5643 54518 54957 + PL577 Unspecified
scaffold5643 56489 56807 - RS1814 Unspecified
scaffold5643 56808 56955 - PL560 Unspecified
scaffold5643 57074 57257 + Copia-3_PTri-I LTR/Copia
scaffold5643 57273 57405 - RS1814 Unspecified
scaffold5643 58019 58044 + (AAT)n Simple_repeat
scaffold5643 58210 58284 + RS727 Unspecified
scaffold5643 58616 58655 + (TTTAAT)n Simple_repeat
scaffold5643 59883 59918 + (TACTACG)n Simple_repeat
scaffold5643 59986 60040 + (ATTA)n Simple_repeat
scaffold5643 62324 62707 + RS18078 Unspecified
scaffold5643 62776 62823 + A-rich Low_complexity
scaffold5643 63247 63272 + (T)n Simple_repeat
scaffold5643 63289 63319 + (TTTAG)n Simple_repeat
scaffold5643 63395 63526 + RS371 Unspecified
scaffold5643 67307 67348 + (CGAT)n Simple_repeat
scaffold5643 67413 67441 + (CAATT)n Simple_repeat
scaffold5643 67832 67885 + (GTG)n Simple_repeat
scaffold5643 67991 68037 + (TAT)n Simple_repeat
scaffold5643 69050 69088 + (TAA)n Simple_repeat
scaffold5643 69151 69333 + RS1340 Unspecified
scaffold5643 69568 70050 - Copia-81_BRa-I LTR/Copia
scaffold5643 74616 74676 + (T)n Simple_repeat
scaffold5643 75726 75950 + RS8 Unspecified
scaffold5643 75946 76020 + RS8 Unspecified
scaffold5643 76431 76467 + (A)n Simple_repeat
scaffold5643 77056 77584 + RS507 Unspecified
scaffold5643 81854 81888 + A-rich Low_complexity
scaffold5643 84473 84673 + PL560 Unspecified
scaffold5643 85006 85034 + (T)n Simple_repeat
scaffold5643 85037 85131 - RS16358 Unspecified
scaffold5643 85156 85200 + (CGACTCGACC)n Simple_repeat
scaffold5643 85222 85276 + (GACCC)n Simple_repeat
scaffold5643 85297 85362 - RS5044 Unspecified
scaffold5643 85307 85371 - RS234 Unspecified
scaffold5643 86615 86682 + G-rich Low_complexity
scaffold5643 86673 86727 + (CGCCGG)n Simple_repeat
scaffold5643 86822 86869 + GA-rich Low_complexity
scaffold5643 87810 87859 + A-rich Low_complexity
scaffold5643 88833 89475 + RS15010 Unspecified
scaffold5643 89503 89620 + RS15316 Unspecified
scaffold5643 89642 89833 - RS559 Unspecified
scaffold5643 90027 90216 + Copia-102_GM-LTR LTR/Copia
scaffold5643 90217 92297 + Copia-102_GM-I LTR/Copia
scaffold5643 92470 93112 + RS15010 Unspecified
scaffold5643 93140 93257 + RS15316 Unspecified
scaffold5643 93279 93501 + (A)n Simple_repeat
scaffold5643 93482 93501 + (A)n Simple_repeat
scaffold5643 95647 96761 + Copia-102_GM-I LTR/Copia
scaffold5643 96861 97479 + RS15010 Unspecified
scaffold5643 97504 97623 + RS15316 Unspecified
scaffold5643 97889 98116 - PL517 Unspecified
scaffold5643 98487 98531 + A-rich Low_complexity
scaffold5643 99110 101633 + Copia-102_GM-I LTR/Copia
scaffold5643 102465 102736 + RS17600 Unspecified
scaffold5643 103871 103962 - Copia-3_PTri-I LTR/Copia
scaffold5643 103974 104125 - Copia-3_PTri-I LTR/Copia
scaffold5643 104126 104195 - Copia-3_PTri-I LTR/Copia
scaffold5643 104247 104350 - RS16911 Unspecified
scaffold5643 104262 104353 + RS13929 Unspecified
scaffold5643 104263 104376 - PL754 Unspecified
scaffold5643 105346 106133 - RS2708 Unspecified
scaffold5643 107202 107407 - Copia-3_PTri-I LTR/Copia
scaffold5643 109553 109603 + A-rich Low_complexity
scaffold5643 109661 109871 - RS1746 Unspecified
scaffold5643 110487 110949 - RS576 Unspecified
scaffold5643 110866 110961 - RS2328 Unspecified
scaffold5643 110962 111061 - RS9955 Unspecified
scaffold5643 112141 112175 + (ACTTCAG)n Simple_repeat
scaffold5643 114797 114829 + (AC)n Simple_repeat
scaffold5643 122428 122677 + RS145 Unspecified
scaffold5643 123195 123244 + (TAT)n Simple_repeat
scaffold5643 123252 123377 + RS12449 Unspecified
scaffold5643 123284 123380 - RS4475 Unspecified
scaffold5643 123656 123757 - RS463 Unspecified
scaffold5643 125140 125323 - RS586 Unspecified
scaffold5643 125215 125339 - RS9066 Unspecified
scaffold5643 125349 125440 + PL606 Unspecified
scaffold5643 125583 125789 + RS4 Unspecified
scaffold5643 127554 127588 + (TCCTTC)n Simple_repeat
scaffold5643 131440 131467 + (AAT)n Simple_repeat
scaffold5643 131641 131734 + A-rich Low_complexity
scaffold5643 131856 131909 + (TATTA)n Simple_repeat
scaffold5643 131910 131918 + (ATT)n Simple_repeat
scaffold5643 131944 131971 + (TGAA)n Simple_repeat
scaffold5643 135121 135158 + (GTTTTTA)n Simple_repeat
scaffold5643 135921 135993 - RS8762 Unspecified
scaffold5643 136014 136086 + (AATA)n Simple_repeat
scaffold5643 136065 136088 + (A)n Simple_repeat
scaffold5643 136284 136318 + A-rich Low_complexity
scaffold5643 139819 140032 + RS13348 Unspecified
scaffold5643 140029 140167 - RS14642 Unspecified
scaffold5643 140165 140358 + RS2997 Unspecified
scaffold5643 140685 140732 + (TTTTC)n Simple_repeat
scaffold5643 140826 140862 + (TTTACT)n Simple_repeat
scaffold5643 141147 141410 - RS2420 Unspecified
scaffold5643 141207 141457 - RS3477 Unspecified
scaffold5643 141489 141531 + (TGG)n Simple_repeat
scaffold5643 141532 141563 + (GGTGAT)n Simple_repeat
scaffold5643 141986 142219 + RS117 Unspecified
scaffold5643 142217 142313 + RS16382 Unspecified
scaffold5643 142421 142443 + (T)n Simple_repeat
scaffold5643 142512 142598 - RS13324 Unspecified
scaffold5643 142656 142741 + (GACCC)n Simple_repeat
scaffold5643 142885 143149 + RS68 Unspecified
scaffold5643 142885 143083 - RS757 Unspecified
scaffold5643 142918 143150 + RS13348 Unspecified
scaffold5643 143147 143285 - RS14642 Unspecified
scaffold5643 143283 143476 + RS2997 Unspecified
scaffold5643 143803 143850 + (TTTTC)n Simple_repeat
scaffold5643 143944 143980 + (TTTACT)n Simple_repeat
scaffold5643 144265 144528 - RS2420 Unspecified
scaffold5643 144325 144575 - RS3477 Unspecified
scaffold5643 144607 144649 + (TGG)n Simple_repeat
scaffold5643 144650 144681 + (GGTGAT)n Simple_repeat
scaffold5643 145932 145974 + A-rich Low_complexity
scaffold5643 146620 146669 + A-rich Low_complexity
scaffold5643 146669 146787 + RS14819 Unspecified
scaffold5643 147045 147071 + (GTGTC)n Simple_repeat
scaffold5643 147624 147700 + (ATTTT)n Simple_repeat
scaffold5643 147880 147973 - RS4475 Unspecified
scaffold5643 148580 148684 + RS3769 Unspecified
scaffold5643 148810 148929 + A-rich Low_complexity
scaffold5643 149453 149549 + (TAA)n Simple_repeat
scaffold5643 149740 149771 + (AAT)n Simple_repeat
scaffold5643 150415 150493 + A-rich Low_complexity
scaffold5643 151112 151161 + A-rich Low_complexity
scaffold5643 151161 151279 + RS14819 Unspecified
scaffold5643 152115 152191 + (ATTTT)n Simple_repeat
scaffold5643 152371 152464 - RS4475 Unspecified
scaffold5643 153460 153734 + RS586 Unspecified
scaffold5643 153853 153895 + (CAATTGT)n Simple_repeat
scaffold5643 157127 157161 + (A)n Simple_repeat
scaffold5643 157467 157494 + (TATTT)n Simple_repeat
scaffold5643 157843 157897 + (CT)n Simple_repeat
scaffold5643 159368 159389 + (T)n Simple_repeat
scaffold5643 159513 159674 + RS12287 Unspecified
scaffold5643 159706 159737 + (T)n Simple_repeat
scaffold5643 160790 160816 + (AGC)n Simple_repeat
scaffold5643 161166 161187 + (A)n Simple_repeat
scaffold5643 164763 165023 - RS16888 Unspecified
scaffold5643 165129 165775 + RS77 Unspecified
scaffold5643 166559 166584 + (A)n Simple_repeat
scaffold5643 166621 166651 + (A)n Simple_repeat
scaffold5643 167181 167199 + (A)n Simple_repeat
scaffold5643 169767 169934 + RS371 Unspecified
scaffold5643 169992 170026 + A-rich Low_complexity
scaffold5643 170730 170899 + PL438 Unspecified
scaffold5643 173671 173710 + (CTGAA)n Simple_repeat
scaffold5643 175259 175355 + RS3769 Unspecified
scaffold5643 175442 175632 - RS10433 Unspecified
scaffold5643 175636 175683 - RS10433 Unspecified
scaffold5643 175754 176370 - RS637 Unspecified
scaffold5643 176354 176922 + RS546 Unspecified
scaffold5643 176433 177120 - RS325 Unspecified
scaffold5643 177218 177401 + RS371 Unspecified
scaffold5643 177459 177493 + A-rich Low_complexity
scaffold5643 178202 178231 + (GACCC)n Simple_repeat
scaffold5643 178428 178570 - ATENSPM1 DNA/CMC-EnSpm
scaffold5643 178779 178815 + A-rich Low_complexity
scaffold5643 179071 179105 + A-rich Low_complexity
scaffold5643 179576 179745 - RS12596 Unspecified
scaffold5643 180155 180210 + G-rich Low_complexity
scaffold5643 180341 180377 + (A)n Simple_repeat
scaffold5643 180968 181008 + (A)n Simple_repeat
scaffold5643 181704 181722 + (T)n Simple_repeat
scaffold5643 182798 182818 + (AAAT)n Simple_repeat
scaffold5643 183112 183230 - PL777 Unspecified
scaffold5643 183145 183307 - RS767 Unspecified
scaffold5643 183319 183380 + RS1831 Unspecified
scaffold5643 185898 185916 + (T)n Simple_repeat
scaffold5643 187235 187282 + RS16604 Unspecified
scaffold5643 187247 187292 - RS17 Unspecified
scaffold5643 187357 187394 + (ATTTAGG)n Simple_repeat
scaffold5643 188572 188597 + (T)n Simple_repeat
scaffold5643 189677 189786 + PL517 Unspecified
scaffold5643 189811 189852 + (ATGTTA)n Simple_repeat
scaffold5643 194644 194730 + RS17 Unspecified
scaffold5643 195457 195517 + (CCCTC)n Simple_repeat
scaffold5643 195803 195926 - hAT-13_VVi DNA/hAT-Ac
scaffold5643 196075 196386 + RS15505 Unspecified
scaffold5643 196745 196873 + RS15094 Unspecified
scaffold5643 197024 197318 + RS16815 Unspecified
scaffold5643 197450 197592 + RS14103 Unspecified
scaffold5643 197729 198161 + RS9897 Unspecified
scaffold5643 198055 198183 + RS16241 Unspecified
scaffold5643 198891 198974 - hAT-13_VVi DNA/hAT-Ac
scaffold5643 199001 199027 + (T)n Simple_repeat
scaffold5643 199138 199449 + RS15505 Unspecified
scaffold5643 199808 199936 + RS15094 Unspecified
scaffold5643 200087 200381 + RS16815 Unspecified
scaffold5643 200513 200655 + RS14103 Unspecified
scaffold5643 200792 201222 + RS9897 Unspecified
scaffold5643 201116 201244 + RS16241 Unspecified
scaffold5643 201300 201500 + RS7941 Unspecified
scaffold5643 201864 201921 - PIGY-I_PS LTR/Gypsy
scaffold5643 203168 203233 + (CAA)n Simple_repeat
scaffold5643 203868 204029 + GA-rich Low_complexity
scaffold5643 204451 204493 + (TTG)n Simple_repeat
scaffold5643 205399 205424 + (TTTC)n Simple_repeat
scaffold5643 210444 210596 + (CAGTT)n Simple_repeat
scaffold5643 211384 211411 + (T)n Simple_repeat
scaffold5643 211701 211773 + (CAGCT)n Simple_repeat
scaffold5643 212983 213137 - Copia-3_PTri-I LTR/Copia
scaffold5643 213138 213208 - Copia-3_PTri-I LTR/Copia
scaffold5643 214448 214476 + (T)n Simple_repeat
scaffold5643 214659 214690 + (T)n Simple_repeat
scaffold5643 215228 215248 + (T)n Simple_repeat
scaffold5643 216367 216487 + (TCGGG)n Simple_repeat
scaffold5643 216938 216967 + (TAA)n Simple_repeat
scaffold5643 217114 217153 + (A)n Simple_repeat
scaffold5643 217379 217490 - RS4475 Unspecified
scaffold5643 217532 217597 - RS2386 Unspecified
scaffold5643 217600 217677 - RS2386 Unspecified
scaffold5643 219008 219071 - LTR-2_MX-LTR LTR
scaffold5643 219541 219589 + RS11327 Unspecified
scaffold5643 219822 219855 + (AATATT)n Simple_repeat
scaffold5643 219899 219967 - PL517 Unspecified
scaffold5643 219926 219990 - PL517 Unspecified
scaffold5643 220279 220702 - PL654 Unspecified
scaffold5643 220329 220700 - RS1010 Unspecified
scaffold5643 220624 220712 - PL753 Unspecified
scaffold5643 220770 220854 + HADES_TA DNA/TcMar-Stowaway
scaffold5643 221175 221193 + (AAT)n Simple_repeat
scaffold5643 221248 221266 + (T)n Simple_repeat
scaffold5643 221855 221941 - RS2535 Unspecified
scaffold5643 221951 222134 - RS1856 Unspecified
scaffold5643 222245 222353 + RS4475 Unspecified
scaffold5643 222809 222825 + (A)n Simple_repeat
scaffold5643 222890 222929 + (T)n Simple_repeat
scaffold5643 223123 223144 + (T)n Simple_repeat
scaffold5643 223192 223233 + (TAATATA)n Simple_repeat
scaffold5643 223688 223958 + Copia-3_PTri-I LTR/Copia
scaffold5643 223785 223958 + Copia-3_PTri-I LTR/Copia
scaffold5643 224800 224842 + (TGAAC)n Simple_repeat
scaffold5643 224915 225045 + RS29 Unspecified
scaffold5643 225598 225809 + RS5791 Unspecified
scaffold5643 227565 227584 + (T)n Simple_repeat
scaffold5643 228290 228318 + (A)n Simple_repeat
scaffold5643 229222 229274 + (TGAAC)n Simple_repeat
scaffold5643 229681 229902 + RS5791 Unspecified
scaffold5643 230047 230087 - PL622 Unspecified
scaffold5643 230467 230559 - RS4475 Unspecified
scaffold5643 233040 233150 + RS6315 Unspecified
scaffold5643 233291 233517 - RS1129 Unspecified
scaffold5643 233291 233477 - RS2452 Unspecified
scaffold5643 233509 233977 + RS1129 Unspecified
scaffold5643 236402 236718 - RS579 Unspecified
scaffold5643 236836 237465 + ATCopia39_I-int LTR/Copia
scaffold5643 237555 238106 + ATCopia39_I-int LTR/Copia
scaffold5643 238345 238505 + Copia-78_VV-I LTR/Copia
scaffold5643 238540 238866 - RS579 Unspecified
scaffold5643 239023 239239 + RS5791 Unspecified
scaffold5643 239820 239871 + (TTCAA)n Simple_repeat
scaffold5643 240563 240640 - RS285 Unspecified
scaffold5643 241041 241141 + RS11761 Unspecified
scaffold5643 242883 243103 + RS5791 Unspecified
scaffold5643 243562 243631 + (CAGTT)n Simple_repeat
scaffold5643 244637 244737 + RS11761 Unspecified
scaffold5643 246196 246223 + (TGAAC)n Simple_repeat
scaffold5643 247365 247405 + GA-rich Low_complexity
scaffold5643 248438 248558 + PL100 Unspecified
scaffold5643 248493 248578 + RS539 Unspecified