scaffold569 Repeat List
| genome |
start |
end |
strand |
repeat-name |
repeat-class |
| scaffold569 |
1 |
1441 |
- |
RS51 |
Unspecified |
| scaffold569 |
1506 |
1548 |
+ |
A-rich |
Low_complexity |
| scaffold569 |
3424 |
3659 |
- |
RS6781 |
Unspecified |
| scaffold569 |
4812 |
5343 |
- |
PL880 |
Unspecified |
| scaffold569 |
6233 |
6268 |
+ |
(GCCG)n |
Simple_repeat |
| scaffold569 |
6607 |
7467 |
- |
Copia-50_GM-I |
LTR/Copia |
| scaffold569 |
7647 |
8444 |
- |
TY1_Copia |
TY1_Copia(TransposonPSI) |
| scaffold569 |
7701 |
8439 |
- |
Copia-50_GM-I |
LTR/Copia |
| scaffold569 |
8743 |
10418 |
- |
Copia-50_GM-I |
LTR/Copia |
| scaffold569 |
10980 |
12468 |
- |
Copia-93_VV-I |
LTR/Copia |
| scaffold569 |
12821 |
14101 |
- |
Copia-93_VV-I |
LTR/Copia |
| scaffold569 |
14345 |
15166 |
- |
Copia-31_GM-I |
LTR/Copia |
| scaffold569 |
16349 |
16632 |
- |
RS1 |
Unspecified |
| scaffold569 |
16976 |
17364 |
- |
PL218 |
Unspecified |
| scaffold569 |
17614 |
17670 |
+ |
(TTG)n |
Simple_repeat |
| scaffold569 |
19092 |
19118 |
+ |
(T)n |
Simple_repeat |
| scaffold569 |
19477 |
19685 |
- |
PL418 |
Unspecified |
| scaffold569 |
22402 |
22935 |
+ |
TY1_Copia |
TY1_Copia(TransposonPSI) |
| scaffold569 |
23323 |
23423 |
+ |
Copia-3_PTri-I |
LTR/Copia |
| scaffold569 |
24652 |
24916 |
- |
RS106 |
Unspecified |
| scaffold569 |
25727 |
25755 |
+ |
(AT)n |
Simple_repeat |
| scaffold569 |
25915 |
25934 |
+ |
(TTA)n |
Simple_repeat |
| scaffold569 |
26217 |
26858 |
+ |
PL211 |
Unspecified |
| scaffold569 |
27840 |
28092 |
- |
RS4 |
Unspecified |
| scaffold569 |
29392 |
29428 |
+ |
(TAATATA)n |
Simple_repeat |
| scaffold569 |
29499 |
29530 |
+ |
(AAT)n |
Simple_repeat |
| scaffold569 |
29737 |
29912 |
- |
RS371 |
Unspecified |
| scaffold569 |
30143 |
30538 |
+ |
RS29 |
Unspecified |
| scaffold569 |
30819 |
30864 |
+ |
(ATTATA)n |
Simple_repeat |
| scaffold569 |
31048 |
31070 |
+ |
(T)n |
Simple_repeat |
| scaffold569 |
33055 |
33326 |
- |
RS17600 |
Unspecified |
| scaffold569 |
34066 |
34134 |
+ |
(TATGTT)n |
Simple_repeat |
| scaffold569 |
34449 |
34498 |
+ |
(ATAAT)n |
Simple_repeat |
| scaffold569 |
35179 |
35221 |
+ |
(AATATTT)n |
Simple_repeat |
| scaffold569 |
35525 |
35583 |
+ |
(AT)n |
Simple_repeat |
| scaffold569 |
39625 |
39660 |
+ |
(ATA)n |
Simple_repeat |
| scaffold569 |
42659 |
42688 |
+ |
(T)n |
Simple_repeat |
| scaffold569 |
43491 |
43507 |
+ |
(A)n |
Simple_repeat |
| scaffold569 |
44615 |
44647 |
+ |
(ATATTTA)n |
Simple_repeat |
| scaffold569 |
46141 |
46163 |
+ |
(GGT)n |
Simple_repeat |
| scaffold569 |
47187 |
47222 |
+ |
(ACTTTAA)n |
Simple_repeat |
| scaffold569 |
47907 |
47998 |
+ |
A-rich |
Low_complexity |
| scaffold569 |
51816 |
51849 |
+ |
(GAT)n |
Simple_repeat |
| scaffold569 |
52060 |
52102 |
+ |
A-rich |
Low_complexity |
| scaffold569 |
52308 |
52349 |
+ |
(TTAGTT)n |
Simple_repeat |
| scaffold569 |
54228 |
54246 |
+ |
(A)n |
Simple_repeat |
| scaffold569 |
55769 |
55800 |
+ |
A-rich |
Low_complexity |
| scaffold569 |
56306 |
56336 |
+ |
(A)n |
Simple_repeat |
| scaffold569 |
57960 |
58007 |
+ |
A-rich |
Low_complexity |
| scaffold569 |
58349 |
58381 |
+ |
(TAAT)n |
Simple_repeat |
| scaffold569 |
58694 |
59060 |
- |
RS512 |
Unspecified |
| scaffold569 |
59109 |
59135 |
+ |
(ATT)n |
Simple_repeat |
| scaffold569 |
59438 |
59463 |
+ |
(GCT)n |
Simple_repeat |
| scaffold569 |
64167 |
64225 |
+ |
A-rich |
Low_complexity |
| scaffold569 |
64468 |
64512 |
+ |
(AGTTC)n |
Simple_repeat |
| scaffold569 |
64701 |
64740 |
+ |
A-rich |
Low_complexity |
| scaffold569 |
65829 |
65878 |
+ |
A-rich |
Low_complexity |
| scaffold569 |
66155 |
66259 |
- |
RS4475 |
Unspecified |
| scaffold569 |
66388 |
66423 |
+ |
A-rich |
Low_complexity |
| scaffold569 |
66695 |
66790 |
+ |
RS16382 |
Unspecified |
| scaffold569 |
66830 |
66898 |
- |
RS12885 |
Unspecified |
| scaffold569 |
67242 |
67321 |
- |
RS367 |
Unspecified |
| scaffold569 |
67415 |
67467 |
+ |
(ATTTTT)n |
Simple_repeat |
| scaffold569 |
67850 |
67900 |
+ |
(TTATTTT)n |
Simple_repeat |
| scaffold569 |
67964 |
68016 |
- |
RS1933 |
Unspecified |
| scaffold569 |
68441 |
68513 |
+ |
Copia-3_PTri-I |
LTR/Copia |
| scaffold569 |
68514 |
68730 |
+ |
Copia-3_PTri-I |
LTR/Copia |
| scaffold569 |
68731 |
68948 |
+ |
Copia-3_PTri-I |
LTR/Copia |
| scaffold569 |
69422 |
69507 |
- |
RS15118 |
Unspecified |
| scaffold569 |
69432 |
69511 |
- |
RS4475 |
Unspecified |
| scaffold569 |
70781 |
70811 |
- |
ROMANI1_I-int |
LTR/Gypsy |
| scaffold569 |
70845 |
70878 |
+ |
(TGT)n |
Simple_repeat |
| scaffold569 |
71522 |
71563 |
+ |
(ATTTTA)n |
Simple_repeat |
| scaffold569 |
73247 |
73284 |
+ |
A-rich |
Low_complexity |
| scaffold569 |
73310 |
73326 |
+ |
(T)n |
Simple_repeat |
| scaffold569 |
73840 |
73848 |
+ |
(TACTAA)n |
Simple_repeat |
| scaffold569 |
73849 |
73903 |
+ |
(TAA)n |
Simple_repeat |
| scaffold569 |
74113 |
74130 |
+ |
(T)n |
Simple_repeat |
| scaffold569 |
74577 |
74644 |
+ |
(TTGA)n |
Simple_repeat |
| scaffold569 |
74831 |
75085 |
+ |
(AGCTG)n |
Simple_repeat |
| scaffold569 |
75830 |
76119 |
- |
Helitron-2_SMo |
RC/Helitron |
| scaffold569 |
79246 |
79406 |
+ |
PL753 |
Unspecified |
| scaffold569 |
79268 |
79683 |
- |
PL734 |
Unspecified |
| scaffold569 |
79770 |
80165 |
+ |
RS10981 |
Unspecified |
| scaffold569 |
79873 |
80307 |
- |
RS4863 |
Unspecified |
| scaffold569 |
80507 |
80725 |
+ |
(CAGCT)n |
Simple_repeat |
| scaffold569 |
82475 |
83473 |
- |
LINE |
LINE(TransposonPSI) |
| scaffold569 |
84318 |
84353 |
+ |
(ATT)n |
Simple_repeat |
| scaffold569 |
84395 |
84561 |
+ |
(CAGCT)n |
Simple_repeat |
| scaffold569 |
84592 |
84655 |
+ |
A-rich |
Low_complexity |
| scaffold569 |
85190 |
85235 |
+ |
(TTTTCG)n |
Simple_repeat |
| scaffold569 |
87753 |
87995 |
+ |
RS8 |
Unspecified |
| scaffold569 |
88126 |
88196 |
+ |
(TAATTCAT)n |
Simple_repeat |
| scaffold569 |
89165 |
89230 |
+ |
(CGTCGC)n |
Simple_repeat |
| scaffold569 |
93756 |
93774 |
+ |
(T)n |
Simple_repeat |
| scaffold569 |
93951 |
94098 |
- |
RS4384 |
Unspecified |
| scaffold569 |
94164 |
94195 |
+ |
(CAAC)n |
Simple_repeat |
| scaffold569 |
94194 |
94234 |
+ |
(A)n |
Simple_repeat |
| scaffold569 |
94735 |
94951 |
- |
RS18 |
Unspecified |
| scaffold569 |
95331 |
95379 |
+ |
(TCTTCG)n |
Simple_repeat |
| scaffold569 |
96299 |
96337 |
+ |
(GTCTTC)n |
Simple_repeat |
| scaffold569 |
98598 |
98785 |
- |
RS1042 |
Unspecified |
| scaffold569 |
98964 |
99139 |
- |
RS1042 |
Unspecified |
| scaffold569 |
99502 |
99556 |
+ |
(TTC)n |
Simple_repeat |
| scaffold569 |
99957 |
100067 |
+ |
(ATG)n |
Simple_repeat |
| scaffold569 |
100884 |
100944 |
+ |
RS18111 |
Unspecified |
| scaffold569 |
103440 |
103495 |
+ |
RS18020 |
Unspecified |
| scaffold569 |
103446 |
103624 |
+ |
RS142 |
Unspecified |
| scaffold569 |
103868 |
103887 |
+ |
(T)n |
Simple_repeat |
| scaffold569 |
103972 |
104048 |
- |
RS4475 |
Unspecified |
| scaffold569 |
104622 |
104655 |
+ |
A-rich |
Low_complexity |
| scaffold569 |
105089 |
105118 |
+ |
(ATTG)n |
Simple_repeat |
| scaffold569 |
109046 |
109067 |
+ |
(AAC)n |
Simple_repeat |
| scaffold569 |
109342 |
109358 |
+ |
(A)n |
Simple_repeat |
| scaffold569 |
109497 |
109523 |
+ |
(A)n |
Simple_repeat |
| scaffold569 |
109721 |
110077 |
- |
RS1442 |
Unspecified |
| scaffold569 |
110088 |
110121 |
+ |
(T)n |
Simple_repeat |
| scaffold569 |
110277 |
110332 |
+ |
GA-rich |
Low_complexity |
| scaffold569 |
111019 |
111094 |
+ |
(A)n |
Simple_repeat |
| scaffold569 |
112040 |
112061 |
+ |
(ATTA)n |
Simple_repeat |
| scaffold569 |
112212 |
112248 |
+ |
(AAT)n |
Simple_repeat |
| scaffold569 |
114564 |
114854 |
- |
RS518 |
Unspecified |
| scaffold569 |
115052 |
115157 |
+ |
RS1680 |
Unspecified |
| scaffold569 |
115621 |
115706 |
+ |
A-rich |
Low_complexity |
| scaffold569 |
115723 |
115800 |
+ |
(ATTATC)n |
Simple_repeat |
| scaffold569 |
115900 |
115939 |
+ |
(ATCATT)n |
Simple_repeat |
| scaffold569 |
116104 |
116275 |
- |
RS11347 |
Unspecified |
| scaffold569 |
116415 |
116460 |
+ |
(T)n |
Simple_repeat |
| scaffold569 |
116519 |
116619 |
- |
RS8606 |
Unspecified |
| scaffold569 |
116631 |
116875 |
- |
RS8606 |
Unspecified |
| scaffold569 |
117068 |
117202 |
- |
RS4639 |
Unspecified |
| scaffold569 |
117242 |
117302 |
- |
RS11452 |
Unspecified |
| scaffold569 |
117425 |
117442 |
+ |
(T)n |
Simple_repeat |
| scaffold569 |
120103 |
120123 |
+ |
(T)n |
Simple_repeat |
| scaffold569 |
120973 |
121085 |
+ |
A-rich |
Low_complexity |
| scaffold569 |
121134 |
121165 |
+ |
(AATT)n |
Simple_repeat |
| scaffold569 |
121236 |
121257 |
+ |
(TAA)n |
Simple_repeat |
| scaffold569 |
123863 |
124007 |
- |
RS5561 |
Unspecified |
| scaffold569 |
126006 |
126024 |
+ |
(A)n |
Simple_repeat |
| scaffold569 |
126696 |
126759 |
+ |
A-rich |
Low_complexity |
| scaffold569 |
126898 |
126920 |
+ |
(TGG)n |
Simple_repeat |
| scaffold569 |
127069 |
127109 |
+ |
(TTA)n |
Simple_repeat |
| scaffold569 |
127702 |
127732 |
+ |
(TTTGA)n |
Simple_repeat |
| scaffold569 |
128070 |
128116 |
+ |
(ACTGA)n |
Simple_repeat |
| scaffold569 |
129456 |
129518 |
+ |
(ATACGAT)n |
Simple_repeat |
| scaffold569 |
129710 |
129777 |
+ |
(TAA)n |
Simple_repeat |
| scaffold569 |
131288 |
131329 |
+ |
(TTTTA)n |
Simple_repeat |
| scaffold569 |
131713 |
131750 |
+ |
(CTATCCT)n |
Simple_repeat |
| scaffold569 |
131761 |
132203 |
+ |
RS2473 |
Unspecified |
| scaffold569 |
132241 |
132533 |
+ |
RS2697 |
Unspecified |
| scaffold569 |
132616 |
132659 |
- |
RS2386 |
Unspecified |
| scaffold569 |
132653 |
132709 |
+ |
RS41 |
Unspecified |
| scaffold569 |
132848 |
132944 |
+ |
RS4475 |
Unspecified |
| scaffold569 |
133675 |
133785 |
- |
RS6320 |
Unspecified |
| scaffold569 |
133686 |
133797 |
- |
RS4475 |
Unspecified |
| scaffold569 |
133686 |
133781 |
+ |
RS16382 |
Unspecified |
| scaffold569 |
134435 |
134488 |
+ |
(GATTT)n |
Simple_repeat |
| scaffold569 |
134596 |
134804 |
+ |
RS86 |
Unspecified |
| scaffold569 |
134629 |
134802 |
+ |
RS1829 |
Unspecified |
| scaffold569 |
136276 |
136308 |
+ |
(T)n |
Simple_repeat |
| scaffold569 |
137887 |
137927 |
+ |
(TAA)n |
Simple_repeat |
| scaffold569 |
139304 |
139384 |
+ |
RS1485 |
Unspecified |
| scaffold569 |
139513 |
139774 |
+ |
RS356 |
Unspecified |
| scaffold569 |
140035 |
140154 |
+ |
RS10409 |
Unspecified |
| scaffold569 |
140677 |
140782 |
+ |
RS16888 |
Unspecified |
| scaffold569 |
140784 |
141003 |
- |
RS11189 |
Unspecified |
| scaffold569 |
141053 |
141237 |
+ |
(TTCGGG)n |
Simple_repeat |
| scaffold569 |
141559 |
142026 |
+ |
PL116 |
Unspecified |
| scaffold569 |
142129 |
142188 |
+ |
(CTCCTT)n |
Simple_repeat |
| scaffold569 |
142215 |
142318 |
+ |
(ACA)n |
Simple_repeat |
| scaffold569 |
142633 |
142725 |
- |
HAT-9_Mad |
DNA/hAT-Ac |
| scaffold569 |
142806 |
142859 |
- |
RS581 |
Unspecified |
| scaffold569 |
142993 |
143027 |
+ |
(AAAGAA)n |
Simple_repeat |
| scaffold569 |
143264 |
143345 |
+ |
(ATTTGTA)n |
Simple_repeat |
| scaffold569 |
143390 |
143430 |
+ |
A-rich |
Low_complexity |
| scaffold569 |
143943 |
143991 |
+ |
(AATT)n |
Simple_repeat |
| scaffold569 |
144228 |
144266 |
+ |
(GAC)n |
Simple_repeat |
| scaffold569 |
144347 |
144380 |
+ |
(CAAGCC)n |
Simple_repeat |
| scaffold569 |
144601 |
144625 |
+ |
(CAACGA)n |
Simple_repeat |
| scaffold569 |
145599 |
145628 |
+ |
(ATGAC)n |
Simple_repeat |
| scaffold569 |
145990 |
146011 |
+ |
(A)n |
Simple_repeat |
| scaffold569 |
146621 |
146765 |
- |
RS1829 |
Unspecified |
| scaffold569 |
147460 |
147486 |
+ |
(GTT)n |
Simple_repeat |
| scaffold569 |
151352 |
151397 |
+ |
(AACCGTT)n |
Simple_repeat |
| scaffold569 |
151439 |
151463 |
+ |
(TTAT)n |
Simple_repeat |
| scaffold569 |
151849 |
151889 |
+ |
(ACAT)n |
Simple_repeat |
| scaffold569 |
152072 |
152104 |
+ |
(TG)n |
Simple_repeat |
| scaffold569 |
152505 |
152757 |
+ |
RS26 |
Unspecified |
| scaffold569 |
158743 |
158900 |
+ |
(TTCAG)n |
Simple_repeat |
| scaffold569 |
160125 |
160156 |
+ |
(ATCTA)n |
Simple_repeat |
| scaffold569 |
160186 |
160217 |
+ |
(TTAA)n |
Simple_repeat |
| scaffold569 |
163838 |
164196 |
- |
PL359 |
Unspecified |
| scaffold569 |
164181 |
164229 |
- |
RS1230 |
Unspecified |
| scaffold569 |
164225 |
164460 |
- |
RS13348 |
Unspecified |
| scaffold569 |
164296 |
164483 |
+ |
RS757 |
Unspecified |
| scaffold569 |
164330 |
164508 |
+ |
RS15697 |
Unspecified |
| scaffold569 |
164502 |
164733 |
- |
PL359 |
Unspecified |
| scaffold569 |
165692 |
165782 |
- |
RS13382 |
Unspecified |
| scaffold569 |
166164 |
166235 |
+ |
(TTATTT)n |
Simple_repeat |
| scaffold569 |
166270 |
166286 |
+ |
(TG)n |
Simple_repeat |
| scaffold569 |
166333 |
166395 |
+ |
A-rich |
Low_complexity |
| scaffold569 |
168216 |
168329 |
- |
RS3146 |
Unspecified |
| scaffold569 |
168316 |
168357 |
- |
RS3146 |
Unspecified |
| scaffold569 |
168320 |
168364 |
- |
RS15113 |
Unspecified |
| scaffold569 |
168615 |
168902 |
+ |
(CAGTT)n |
Simple_repeat |
| scaffold569 |
169083 |
169563 |
+ |
RS1814 |
Unspecified |
| scaffold569 |
170876 |
170920 |
+ |
(ATTA)n |
Simple_repeat |
| scaffold569 |
171523 |
171542 |
+ |
(T)n |
Simple_repeat |
| scaffold569 |
175286 |
175341 |
+ |
SSU-rRNA_Ath |
rRNA |
| scaffold569 |
176203 |
176232 |
+ |
(T)n |
Simple_repeat |
| scaffold569 |
177053 |
177077 |
+ |
(A)n |
Simple_repeat |
| scaffold569 |
177712 |
177973 |
- |
RS1 |
Unspecified |
| scaffold569 |
178178 |
178438 |
+ |
(CTGAA)n |
Simple_repeat |
| scaffold569 |
178178 |
178398 |
+ |
(CTGAA)n |
Simple_repeat |
| scaffold569 |
178369 |
178438 |
+ |
RS14529 |
Unspecified |
| scaffold569 |
178772 |
178799 |
+ |
(AATTA)n |
Simple_repeat |
| scaffold569 |
179171 |
179251 |
+ |
PL517 |
Unspecified |
| scaffold569 |
179252 |
179285 |
+ |
(TATTAT)n |
Simple_repeat |
| scaffold569 |
179288 |
179363 |
+ |
(ATA)n |
Simple_repeat |
| scaffold569 |
180104 |
180159 |
+ |
(TTA)n |
Simple_repeat |
| scaffold569 |
180197 |
180323 |
+ |
PL517 |
Unspecified |
| scaffold569 |
180214 |
180341 |
+ |
PL517 |
Unspecified |
| scaffold569 |
180387 |
180579 |
+ |
RS152 |
Unspecified |
| scaffold569 |
180546 |
180584 |
+ |
RS14541 |
Unspecified |
| scaffold569 |
180586 |
180722 |
- |
RS241 |
Unspecified |
| scaffold569 |
181087 |
181397 |
+ |
PL347 |
Unspecified |