scaffold5704 Repeat List
| genome |
start |
end |
strand |
repeat-name |
repeat-class |
| scaffold5704 |
599 |
627 |
+ |
(AATG)n |
Simple_repeat |
| scaffold5704 |
642 |
1347 |
- |
RS1547 |
Unspecified |
| scaffold5704 |
1194 |
1441 |
- |
RS7480 |
Unspecified |
| scaffold5704 |
2395 |
2569 |
- |
RS10222 |
Unspecified |
| scaffold5704 |
2981 |
3005 |
- |
L1-4_VC |
LINE/L1 |
| scaffold5704 |
3006 |
3140 |
+ |
(CTG)n |
Simple_repeat |
| scaffold5704 |
4255 |
4469 |
+ |
(TGT)n |
Simple_repeat |
| scaffold5704 |
4953 |
5085 |
- |
RS7457 |
Unspecified |
| scaffold5704 |
5999 |
6035 |
+ |
(GCT)n |
Simple_repeat |
| scaffold5704 |
6754 |
6803 |
+ |
RS7167 |
Unspecified |
| scaffold5704 |
6905 |
6948 |
+ |
A-rich |
Low_complexity |
| scaffold5704 |
7383 |
7476 |
+ |
RS2597 |
Unspecified |
| scaffold5704 |
7541 |
8027 |
- |
RS2618 |
Unspecified |
| scaffold5704 |
8033 |
8099 |
+ |
(AATATA)n |
Simple_repeat |
| scaffold5704 |
8110 |
8377 |
- |
RS3188 |
Unspecified |
| scaffold5704 |
8343 |
8526 |
- |
RS2189 |
Unspecified |
| scaffold5704 |
8565 |
8736 |
- |
RS5720 |
Unspecified |
| scaffold5704 |
9217 |
11229 |
- |
LINE |
LINE(TransposonPSI) |
| scaffold5704 |
9443 |
10223 |
- |
ATLINE1_11 |
LINE/L1 |
| scaffold5704 |
10436 |
10512 |
- |
LINE1G_MT |
LINE/L1 |
| scaffold5704 |
11943 |
12010 |
+ |
A-rich |
Low_complexity |
| scaffold5704 |
12216 |
12391 |
+ |
RS18 |
Unspecified |
| scaffold5704 |
12413 |
12457 |
+ |
(T)n |
Simple_repeat |
| scaffold5704 |
12458 |
12500 |
+ |
(ATTTT)n |
Simple_repeat |
| scaffold5704 |
12519 |
12633 |
+ |
MUDRAVI1 |
DNA/MULE-MuDR |
| scaffold5704 |
12538 |
12638 |
- |
EnSpm-34_SBi |
DNA/CMC-EnSpm |
| scaffold5704 |
12679 |
12715 |
+ |
(TAA)n |
Simple_repeat |
| scaffold5704 |
12848 |
12884 |
+ |
(CT)n |
Simple_repeat |
| scaffold5704 |
13189 |
13229 |
+ |
(ATT)n |
Simple_repeat |
| scaffold5704 |
13881 |
13915 |
+ |
RS5479 |
Unspecified |
| scaffold5704 |
14087 |
14123 |
+ |
GA-rich |
Low_complexity |
| scaffold5704 |
14255 |
14421 |
+ |
(AAT)n |
Simple_repeat |
| scaffold5704 |
14455 |
14554 |
+ |
(TTCAG)n |
Simple_repeat |
| scaffold5704 |
15115 |
15135 |
+ |
(A)n |
Simple_repeat |
| scaffold5704 |
15881 |
15925 |
+ |
(TTTTTGT)n |
Simple_repeat |
| scaffold5704 |
16529 |
16579 |
+ |
(TTGTT)n |
Simple_repeat |
| scaffold5704 |
22512 |
22634 |
+ |
RS3605 |
Unspecified |
| scaffold5704 |
22532 |
22886 |
+ |
RS3480 |
Unspecified |
| scaffold5704 |
22818 |
22904 |
+ |
RS3480 |
Unspecified |
| scaffold5704 |
23127 |
23278 |
+ |
RS3480 |
Unspecified |
| scaffold5704 |
23205 |
23291 |
+ |
RS3480 |
Unspecified |
| scaffold5704 |
23358 |
24002 |
- |
RS424 |
Unspecified |
| scaffold5704 |
24005 |
24260 |
- |
Copia-4_GM-I |
LTR/Copia |
| scaffold5704 |
26569 |
26621 |
+ |
(AATAA)n |
Simple_repeat |
| scaffold5704 |
26612 |
27197 |
- |
RS424 |
Unspecified |
| scaffold5704 |
28134 |
28166 |
+ |
(TAATAA)n |
Simple_repeat |
| scaffold5704 |
28534 |
28646 |
+ |
RS9980 |
Unspecified |
| scaffold5704 |
28775 |
28807 |
+ |
A-rich |
Low_complexity |
| scaffold5704 |
29695 |
29750 |
+ |
(TAA)n |
Simple_repeat |
| scaffold5704 |
31763 |
31826 |
+ |
L1-9_GM |
LINE/L1 |
| scaffold5704 |
32052 |
33181 |
+ |
L1-5_STu |
LINE/L1 |
| scaffold5704 |
33834 |
34131 |
- |
RS13771 |
Unspecified |
| scaffold5704 |
34264 |
34316 |
+ |
(A)n |
Simple_repeat |
| scaffold5704 |
34408 |
34487 |
- |
RS2273 |
Unspecified |
| scaffold5704 |
34561 |
34668 |
- |
RS2273 |
Unspecified |
| scaffold5704 |
34769 |
34803 |
+ |
A-rich |
Low_complexity |
| scaffold5704 |
34942 |
35034 |
- |
RS3480 |
Unspecified |
| scaffold5704 |
34958 |
35086 |
- |
RS3480 |
Unspecified |
| scaffold5704 |
35087 |
35270 |
+ |
RS2614 |
Unspecified |
| scaffold5704 |
35243 |
35336 |
- |
RS938 |
Unspecified |
| scaffold5704 |
36155 |
36948 |
- |
MuDR3_ZM |
DNA/MULE-MuDR |
| scaffold5704 |
37006 |
37123 |
- |
RS16913 |
Unspecified |
| scaffold5704 |
37680 |
37850 |
- |
Copia-3_PTri-I |
LTR/Copia |
| scaffold5704 |
37851 |
37923 |
- |
Copia-3_PTri-I |
LTR/Copia |
| scaffold5704 |
37924 |
38295 |
+ |
PL922 |
Unspecified |
| scaffold5704 |
38224 |
38312 |
+ |
PL922 |
Unspecified |
| scaffold5704 |
38375 |
38636 |
- |
RS736 |
Unspecified |
| scaffold5704 |
38789 |
38841 |
+ |
RS4090 |
Unspecified |
| scaffold5704 |
39861 |
40832 |
- |
LINE |
LINE(TransposonPSI) |
| scaffold5704 |
40117 |
40744 |
- |
L1-1_PTr |
LINE/L1 |
| scaffold5704 |
41405 |
41460 |
+ |
(TTTA)n |
Simple_repeat |
| scaffold5704 |
42767 |
43112 |
- |
PL255 |
Unspecified |
| scaffold5704 |
45026 |
45090 |
- |
PL368 |
Unspecified |
| scaffold5704 |
46044 |
46155 |
- |
RS492 |
Unspecified |
| scaffold5704 |
46571 |
46943 |
+ |
RS614 |
Unspecified |
| scaffold5704 |
47263 |
47286 |
+ |
(A)n |
Simple_repeat |
| scaffold5704 |
47466 |
47551 |
+ |
(TTCAGAAAAC)n |
Simple_repeat |
| scaffold5704 |
47573 |
47752 |
+ |
(TAA)n |
Simple_repeat |
| scaffold5704 |
48053 |
48165 |
+ |
(TAA)n |
Simple_repeat |
| scaffold5704 |
48173 |
48293 |
+ |
(AAAACTTCAG)n |
Simple_repeat |
| scaffold5704 |
48466 |
48482 |
+ |
(T)n |
Simple_repeat |
| scaffold5704 |
48629 |
48871 |
+ |
RS14955 |
Unspecified |
| scaffold5704 |
49358 |
49708 |
- |
Copia-65_GM-I |
LTR/Copia |
| scaffold5704 |
50277 |
50314 |
+ |
(A)n |
Simple_repeat |
| scaffold5704 |
50392 |
50503 |
- |
RS16382 |
Unspecified |
| scaffold5704 |
51080 |
51344 |
- |
RS10 |
Unspecified |
| scaffold5704 |
51606 |
51641 |
+ |
(TC)n |
Simple_repeat |
| scaffold5704 |
51756 |
51817 |
+ |
A-rich |
Low_complexity |
| scaffold5704 |
51886 |
51928 |
+ |
A-rich |
Low_complexity |
| scaffold5704 |
51996 |
52124 |
+ |
A-rich |
Low_complexity |
| scaffold5704 |
52164 |
52198 |
+ |
(ATTTTA)n |
Simple_repeat |
| scaffold5704 |
53464 |
53494 |
+ |
(T)n |
Simple_repeat |
| scaffold5704 |
54090 |
54199 |
- |
RS17262 |
Unspecified |
| scaffold5704 |
54516 |
54648 |
- |
RS160 |
Unspecified |
| scaffold5704 |
54673 |
54760 |
- |
PL469 |
Unspecified |
| scaffold5704 |
54775 |
54991 |
- |
PL340 |
Unspecified |
| scaffold5704 |
55280 |
55616 |
- |
PL469 |
Unspecified |
| scaffold5704 |
55626 |
56027 |
+ |
PL480 |
Unspecified |
| scaffold5704 |
56023 |
56144 |
- |
RS160 |
Unspecified |
| scaffold5704 |
56043 |
56144 |
- |
RS3590 |
Unspecified |
| scaffold5704 |
56257 |
56292 |
+ |
(TATTT)n |
Simple_repeat |
| scaffold5704 |
56457 |
56477 |
+ |
(T)n |
Simple_repeat |
| scaffold5704 |
56611 |
56660 |
+ |
(TAA)n |
Simple_repeat |
| scaffold5704 |
56965 |
57001 |
+ |
(TTTAATA)n |
Simple_repeat |
| scaffold5704 |
57302 |
57397 |
+ |
RS7678 |
Unspecified |
| scaffold5704 |
57592 |
57612 |
+ |
(T)n |
Simple_repeat |
| scaffold5704 |
58384 |
58417 |
+ |
A-rich |
Low_complexity |
| scaffold5704 |
58762 |
58778 |
+ |
(T)n |
Simple_repeat |
| scaffold5704 |
59155 |
59192 |
+ |
(AAT)n |
Simple_repeat |
| scaffold5704 |
59600 |
59765 |
- |
Copia-101_Mad-I |
LTR/Copia |
| scaffold5704 |
59829 |
63207 |
- |
Copia-101_Mad-I |
LTR/Copia |
| scaffold5704 |
63215 |
63504 |
- |
Copia-101_Mad-I |
LTR/Copia |
| scaffold5704 |
64345 |
64382 |
+ |
(AACTAGC)n |
Simple_repeat |
| scaffold5704 |
64452 |
64468 |
+ |
(A)n |
Simple_repeat |
| scaffold5704 |
64692 |
64953 |
+ |
RS614 |
Unspecified |
| scaffold5704 |
65011 |
65160 |
+ |
RS10074 |
Unspecified |
| scaffold5704 |
65433 |
65467 |
+ |
(A)n |
Simple_repeat |
| scaffold5704 |
65873 |
65890 |
+ |
(C)n |
Simple_repeat |
| scaffold5704 |
66086 |
66182 |
+ |
RS29 |
Unspecified |
| scaffold5704 |
68544 |
68582 |
+ |
GA-rich |
Low_complexity |
| scaffold5704 |
69371 |
69414 |
+ |
(AATCTAT)n |
Simple_repeat |
| scaffold5704 |
69415 |
69893 |
+ |
(TATC)n |
Simple_repeat |
| scaffold5704 |
70409 |
70497 |
- |
RS93 |
Unspecified |
| scaffold5704 |
71069 |
71112 |
+ |
(TTTTA)n |
Simple_repeat |
| scaffold5704 |
71504 |
71562 |
+ |
(CTTCAT)n |
Simple_repeat |
| scaffold5704 |
72379 |
72405 |
+ |
A-rich |
Low_complexity |
| scaffold5704 |
72406 |
72424 |
+ |
(AT)n |
Simple_repeat |
| scaffold5704 |
73023 |
73066 |
+ |
(TTTTAG)n |
Simple_repeat |
| scaffold5704 |
73904 |
74650 |
- |
RS612 |
Unspecified |
| scaffold5704 |
75164 |
75194 |
+ |
(A)n |
Simple_repeat |
| scaffold5704 |
75745 |
75832 |
- |
RS4738 |
Unspecified |
| scaffold5704 |
75944 |
76011 |
+ |
(TTT)n |
Simple_repeat |
| scaffold5704 |
76091 |
76121 |
+ |
(TTTTTTA)n |
Simple_repeat |
| scaffold5704 |
76187 |
76239 |
+ |
(TTTTCTA)n |
Simple_repeat |
| scaffold5704 |
76538 |
76574 |
+ |
(ATT)n |
Simple_repeat |
| scaffold5704 |
78033 |
78071 |
+ |
(ATGTATT)n |
Simple_repeat |
| scaffold5704 |
78178 |
78217 |
+ |
(TA)n |
Simple_repeat |
| scaffold5704 |
78701 |
79351 |
+ |
A-rich |
Low_complexity |
| scaffold5704 |
78701 |
78785 |
+ |
A-rich |
Low_complexity |
| scaffold5704 |
78765 |
79351 |
- |
PL39 |
Unspecified |
| scaffold5704 |
79317 |
79893 |
- |
PL39 |
Unspecified |