scaffold5709 Repeat List
| genome |
start |
end |
strand |
repeat-name |
repeat-class |
| scaffold5709 |
254 |
318 |
- |
Gypsy-10_Pru-LTR |
LTR/Gypsy |
| scaffold5709 |
451 |
855 |
- |
Gypsy-I_MT |
LTR/Gypsy |
| scaffold5709 |
2711 |
3781 |
- |
gypsy |
gypsy(TransposonPSI) |
| scaffold5709 |
2760 |
3756 |
- |
Gypsy-I_MT |
LTR/Gypsy |
| scaffold5709 |
3893 |
4006 |
+ |
(TGTTTTT)n |
Simple_repeat |
| scaffold5709 |
4186 |
4211 |
+ |
(CTT)n |
Simple_repeat |
| scaffold5709 |
4307 |
4390 |
- |
Gypsy-29_VV-I |
LTR/Gypsy |
| scaffold5709 |
4431 |
4949 |
- |
Gypsy-I_MT |
LTR/Gypsy |
| scaffold5709 |
5086 |
5199 |
+ |
(TGTTTTT)n |
Simple_repeat |
| scaffold5709 |
5379 |
5404 |
+ |
(CTT)n |
Simple_repeat |
| scaffold5709 |
5418 |
5455 |
+ |
(TGCTTGAGT)n |
Simple_repeat |
| scaffold5709 |
5518 |
5601 |
- |
Gypsy-29_VV-I |
LTR/Gypsy |
| scaffold5709 |
7355 |
8554 |
+ |
PL956 |
Unspecified |
| scaffold5709 |
9444 |
9499 |
+ |
(TGTGAAT)n |
Simple_repeat |
| scaffold5709 |
13089 |
13125 |
+ |
(AT)n |
Simple_repeat |
| scaffold5709 |
13161 |
13185 |
+ |
(T)n |
Simple_repeat |
| scaffold5709 |
14183 |
14679 |
+ |
PL292 |
Unspecified |
| scaffold5709 |
14950 |
15243 |
- |
EnSpm-8_STu |
DNA/CMC-EnSpm |
| scaffold5709 |
15287 |
16461 |
- |
EnSpm-9_STu |
DNA/CMC-EnSpm |
| scaffold5709 |
16892 |
16985 |
+ |
(CTGAA)n |
Simple_repeat |
| scaffold5709 |
17355 |
17554 |
+ |
PL904 |
Unspecified |
| scaffold5709 |
17747 |
18967 |
+ |
RS534 |
Unspecified |
| scaffold5709 |
19541 |
19778 |
+ |
RS696 |
Unspecified |
| scaffold5709 |
19786 |
19821 |
+ |
(AAT)n |
Simple_repeat |
| scaffold5709 |
19901 |
19937 |
+ |
A-rich |
Low_complexity |
| scaffold5709 |
21095 |
21136 |
+ |
A-rich |
Low_complexity |
| scaffold5709 |
21418 |
21458 |
+ |
(T)n |
Simple_repeat |
| scaffold5709 |
23919 |
23965 |
+ |
A-rich |
Low_complexity |
| scaffold5709 |
24491 |
24532 |
- |
HAT-N10_Mad |
DNA/hAT-Ac |
| scaffold5709 |
24948 |
24989 |
+ |
(GCCG)n |
Simple_repeat |
| scaffold5709 |
26550 |
26854 |
+ |
Gypsy-30_GM-I |
LTR/Gypsy |
| scaffold5709 |
27546 |
27629 |
+ |
RS1633 |
Unspecified |
| scaffold5709 |
27706 |
28190 |
+ |
Gypsy-30_GM-I |
LTR/Gypsy |
| scaffold5709 |
28376 |
28566 |
- |
RS616 |
Unspecified |
| scaffold5709 |
28474 |
28629 |
+ |
RS6459 |
Unspecified |
| scaffold5709 |
28838 |
29129 |
+ |
PL561 |
Unspecified |
| scaffold5709 |
29224 |
29272 |
+ |
(ATTAT)n |
Simple_repeat |
| scaffold5709 |
29323 |
29339 |
+ |
(T)n |
Simple_repeat |
| scaffold5709 |
30276 |
30409 |
- |
L1-4_STu |
LINE/L1 |
| scaffold5709 |
30395 |
30527 |
- |
LINE1I_MT |
LINE/L1 |
| scaffold5709 |
30684 |
31457 |
- |
L1-5_STu |
LINE/L1 |
| scaffold5709 |
31681 |
31754 |
- |
ATLINE1_11 |
LINE/L1 |
| scaffold5709 |
32528 |
32802 |
- |
LINE1I_MT |
LINE/L1 |
| scaffold5709 |
33683 |
33746 |
+ |
A-rich |
Low_complexity |
| scaffold5709 |
33809 |
33845 |
+ |
(A)n |
Simple_repeat |
| scaffold5709 |
34281 |
34326 |
+ |
A-rich |
Low_complexity |
| scaffold5709 |
34325 |
34466 |
- |
PL422 |
Unspecified |
| scaffold5709 |
34465 |
34560 |
- |
RS58 |
Unspecified |
| scaffold5709 |
34558 |
34774 |
+ |
RS58 |
Unspecified |
| scaffold5709 |
35219 |
35278 |
+ |
A-rich |
Low_complexity |
| scaffold5709 |
35629 |
35837 |
+ |
RS5314 |
Unspecified |
| scaffold5709 |
36635 |
36731 |
- |
RS5314 |
Unspecified |
| scaffold5709 |
36730 |
36991 |
+ |
RS365 |
Unspecified |
| scaffold5709 |
37434 |
37479 |
+ |
A-rich |
Low_complexity |
| scaffold5709 |
39103 |
39372 |
+ |
RS458 |
Unspecified |
| scaffold5709 |
39326 |
39427 |
+ |
RS1241 |
Unspecified |
| scaffold5709 |
39455 |
39528 |
+ |
Helitron1_ZM |
RC/Helitron |
| scaffold5709 |
40327 |
40365 |
+ |
(CCGG)n |
Simple_repeat |
| scaffold5709 |
43252 |
43772 |
+ |
MEGY-I_MT |
LTR/Gypsy |
| scaffold5709 |
44540 |
44571 |
+ |
(GCCG)n |
Simple_repeat |
| scaffold5709 |
46787 |
47086 |
+ |
PL958 |
Unspecified |
| scaffold5709 |
47402 |
47467 |
+ |
(TTAATT)n |
Simple_repeat |
| scaffold5709 |
48469 |
48506 |
+ |
(T)n |
Simple_repeat |
| scaffold5709 |
48778 |
48883 |
+ |
(TAT)n |
Simple_repeat |
| scaffold5709 |
49499 |
49605 |
+ |
(ATT)n |
Simple_repeat |
| scaffold5709 |
49629 |
49745 |
+ |
(ATCTGAAGTT)n |
Simple_repeat |
| scaffold5709 |
50714 |
50865 |
- |
PL439 |
Unspecified |
| scaffold5709 |
51034 |
51090 |
+ |
(TTC)n |
Simple_repeat |
| scaffold5709 |
51704 |
51734 |
+ |
(A)n |
Simple_repeat |
| scaffold5709 |
52025 |
52089 |
+ |
(TT)n |
Simple_repeat |
| scaffold5709 |
52164 |
52205 |
+ |
A-rich |
Low_complexity |
| scaffold5709 |
52513 |
52595 |
+ |
A-rich |
Low_complexity |
| scaffold5709 |
53216 |
53487 |
- |
PL301 |
Unspecified |
| scaffold5709 |
53690 |
54449 |
+ |
RS334 |
Unspecified |
| scaffold5709 |
54444 |
54722 |
- |
RS10 |
Unspecified |
| scaffold5709 |
54718 |
54820 |
+ |
RS334 |
Unspecified |
| scaffold5709 |
54820 |
55129 |
- |
PL503 |
Unspecified |
| scaffold5709 |
55315 |
55634 |
- |
RS748 |
Unspecified |
| scaffold5709 |
55897 |
56141 |
- |
RS4 |
Unspecified |
| scaffold5709 |
56397 |
56668 |
+ |
RS10 |
Unspecified |
| scaffold5709 |
56748 |
56906 |
- |
SHAMET |
DNA/TcMar-Stowaway |
| scaffold5709 |
59450 |
59801 |
+ |
PL255 |
Unspecified |
| scaffold5709 |
59837 |
59899 |
+ |
A-rich |
Low_complexity |
| scaffold5709 |
59976 |
60178 |
- |
Copia-3_PTri-I |
LTR/Copia |
| scaffold5709 |
60458 |
60521 |
+ |
(AAC)n |
Simple_repeat |
| scaffold5709 |
60522 |
60544 |
+ |
A-rich |
Low_complexity |
| scaffold5709 |
61172 |
61207 |
+ |
(TAATTA)n |
Simple_repeat |
| scaffold5709 |
61208 |
61251 |
+ |
(TTAATT)n |
Simple_repeat |
| scaffold5709 |
61903 |
61978 |
- |
HAT-N11_Mad |
DNA/hAT-Ac |
| scaffold5709 |
62185 |
62247 |
+ |
A-rich |
Low_complexity |
| scaffold5709 |
62338 |
62509 |
+ |
TRAMET1 |
DNA/TcMar-Stowaway |
| scaffold5709 |
62528 |
62978 |
- |
PL352 |
Unspecified |
| scaffold5709 |
63632 |
63712 |
- |
DNA-TA-1_STu |
DNA/TcMar-Stowaway |
| scaffold5709 |
63803 |
64033 |
- |
RS9518 |
Unspecified |
| scaffold5709 |
64211 |
64502 |
+ |
RS588 |
Unspecified |
| scaffold5709 |
64831 |
64865 |
+ |
(T)n |
Simple_repeat |
| scaffold5709 |
65003 |
65643 |
- |
RS11316 |
Unspecified |
| scaffold5709 |
65782 |
65830 |
+ |
(ATA)n |
Simple_repeat |
| scaffold5709 |
65844 |
66476 |
+ |
RS2190 |
Unspecified |
| scaffold5709 |
66479 |
66508 |
+ |
(TAAGT)n |
Simple_repeat |
| scaffold5709 |
66641 |
66663 |
+ |
(AATT)n |
Simple_repeat |
| scaffold5709 |
66896 |
66971 |
+ |
(AATAATA)n |
Simple_repeat |
| scaffold5709 |
67565 |
67930 |
- |
cacta |
cacta(TransposonPSI) |
| scaffold5709 |
68226 |
68458 |
+ |
RS8663 |
Unspecified |
| scaffold5709 |
68455 |
68498 |
+ |
A-rich |
Low_complexity |
| scaffold5709 |
68798 |
68849 |
+ |
(GGT)n |
Simple_repeat |
| scaffold5709 |
68928 |
68990 |
+ |
RS624 |
Unspecified |
| scaffold5709 |
68939 |
69002 |
+ |
RS624 |
Unspecified |
| scaffold5709 |
69021 |
69083 |
+ |
(CGGCC)n |
Simple_repeat |
| scaffold5709 |
69165 |
69208 |
+ |
A-rich |
Low_complexity |
| scaffold5709 |
69470 |
69787 |
+ |
RS624 |
Unspecified |
| scaffold5709 |
70185 |
70233 |
+ |
(TATTA)n |
Simple_repeat |
| scaffold5709 |
70458 |
70503 |
+ |
(TATT)n |
Simple_repeat |
| scaffold5709 |
70625 |
70858 |
- |
PL747 |
Unspecified |
| scaffold5709 |
71285 |
71337 |
+ |
(TTTT)n |
Simple_repeat |
| scaffold5709 |
71428 |
71456 |
+ |
(ATATT)n |
Simple_repeat |
| scaffold5709 |
71482 |
71865 |
- |
RS776 |
Unspecified |
| scaffold5709 |
72310 |
72409 |
+ |
(ATCCAT)n |
Simple_repeat |
| scaffold5709 |
72553 |
72580 |
+ |
A-rich |
Low_complexity |
| scaffold5709 |
72863 |
72900 |
+ |
(ATCCAT)n |
Simple_repeat |
| scaffold5709 |
73084 |
73465 |
- |
RS2208 |
Unspecified |
| scaffold5709 |
75647 |
75713 |
+ |
(TTTA)n |
Simple_repeat |
| scaffold5709 |
76048 |
76456 |
+ |
RS5939 |
Unspecified |
| scaffold5709 |
76687 |
76725 |
+ |
A-rich |
Low_complexity |
| scaffold5709 |
77170 |
77230 |
- |
Gypsy-30_GM-I |
LTR/Gypsy |
| scaffold5709 |
77772 |
77854 |
+ |
(T)n |
Simple_repeat |
| scaffold5709 |
78621 |
78663 |
- |
Gypsy-10_Mad-I |
LTR/Gypsy |
| scaffold5709 |
79376 |
79414 |
+ |
(TTTAGT)n |
Simple_repeat |
| scaffold5709 |
80157 |
80320 |
- |
RS70 |
Unspecified |
| scaffold5709 |
80312 |
80365 |
- |
RS368 |
Unspecified |
| scaffold5709 |
80715 |
80764 |
+ |
(TATCTA)n |
Simple_repeat |
| scaffold5709 |
80981 |
81007 |
+ |
(AT)n |
Simple_repeat |
| scaffold5709 |
81066 |
81088 |
+ |
(A)n |
Simple_repeat |
| scaffold5709 |
81578 |
81616 |
+ |
(TGA)n |
Simple_repeat |
| scaffold5709 |
82668 |
82833 |
+ |
(TTG)n |
Simple_repeat |