scaffold5715 Repeat List
| genome |
start |
end |
strand |
repeat-name |
repeat-class |
| scaffold5715 |
1 |
52 |
+ |
RS3999 |
Unspecified |
| scaffold5715 |
1187 |
1226 |
+ |
A-rich |
Low_complexity |
| scaffold5715 |
1238 |
1265 |
- |
Gypsy-16_Mad-I |
LTR/Gypsy |
| scaffold5715 |
1848 |
1939 |
- |
PL614 |
Unspecified |
| scaffold5715 |
1938 |
1989 |
+ |
(AAT)n |
Simple_repeat |
| scaffold5715 |
2211 |
2247 |
+ |
(GCCG)n |
Simple_repeat |
| scaffold5715 |
2428 |
2541 |
- |
RS70 |
Unspecified |
| scaffold5715 |
3131 |
3166 |
+ |
(AAAC)n |
Simple_repeat |
| scaffold5715 |
5853 |
6602 |
- |
RS227 |
Unspecified |
| scaffold5715 |
6619 |
8045 |
- |
RS934 |
Unspecified |
| scaffold5715 |
11433 |
11599 |
- |
RS2619 |
Unspecified |
| scaffold5715 |
11642 |
12089 |
+ |
RS1496 |
Unspecified |
| scaffold5715 |
14239 |
15034 |
+ |
GYPSY3-I_MT |
LTR/Gypsy |
| scaffold5715 |
18005 |
18073 |
+ |
(ACAACG)n |
Simple_repeat |
| scaffold5715 |
18229 |
18673 |
- |
RS374 |
Unspecified |
| scaffold5715 |
18632 |
18897 |
- |
RS150 |
Unspecified |
| scaffold5715 |
18894 |
19135 |
+ |
PL111 |
Unspecified |
| scaffold5715 |
19131 |
19410 |
- |
RS51 |
Unspecified |
| scaffold5715 |
19740 |
19946 |
- |
PL684 |
Unspecified |
| scaffold5715 |
20289 |
20789 |
+ |
PL956 |
Unspecified |
| scaffold5715 |
20790 |
22531 |
- |
RS51 |
Unspecified |
| scaffold5715 |
21626 |
23253 |
- |
RS254 |
Unspecified |
| scaffold5715 |
24006 |
24075 |
+ |
(TTGATTA)n |
Simple_repeat |
| scaffold5715 |
24661 |
24819 |
- |
RS2782 |
Unspecified |
| scaffold5715 |
25078 |
25562 |
+ |
Gypsy-137_GM-I |
LTR/Gypsy |
| scaffold5715 |
26277 |
26296 |
+ |
(AGA)n |
Simple_repeat |
| scaffold5715 |
26297 |
26331 |
+ |
GA-rich |
Low_complexity |
| scaffold5715 |
26474 |
26980 |
+ |
Gypsy-137_GM-I |
LTR/Gypsy |
| scaffold5715 |
28073 |
28154 |
+ |
Gypsy18-PTR_I-int |
LTR/Gypsy |
| scaffold5715 |
28155 |
28175 |
+ |
(A)n |
Simple_repeat |
| scaffold5715 |
28616 |
28637 |
+ |
(A)n |
Simple_repeat |
| scaffold5715 |
28642 |
28736 |
+ |
Ogre-MT3_I-int |
LTR/Gypsy |
| scaffold5715 |
30409 |
30895 |
+ |
RS827 |
Unspecified |
| scaffold5715 |
30884 |
30979 |
- |
PL620 |
Unspecified |
| scaffold5715 |
30977 |
31131 |
+ |
RS7501 |
Unspecified |
| scaffold5715 |
31799 |
32095 |
+ |
RS13446 |
Unspecified |
| scaffold5715 |
32384 |
32447 |
+ |
(TATTT)n |
Simple_repeat |
| scaffold5715 |
32719 |
32759 |
+ |
(TAATATT)n |
Simple_repeat |
| scaffold5715 |
33065 |
33342 |
+ |
RS7284 |
Unspecified |
| scaffold5715 |
33624 |
33687 |
+ |
RS5271 |
Unspecified |
| scaffold5715 |
33657 |
33702 |
+ |
RS5271 |
Unspecified |
| scaffold5715 |
33738 |
33782 |
+ |
RS5271 |
Unspecified |
| scaffold5715 |
33768 |
34018 |
+ |
RS5271 |
Unspecified |
| scaffold5715 |
34042 |
34108 |
- |
RS2288 |
Unspecified |
| scaffold5715 |
34060 |
34323 |
+ |
PL646 |
Unspecified |
| scaffold5715 |
34318 |
34595 |
+ |
RS7284 |
Unspecified |
| scaffold5715 |
34786 |
35320 |
+ |
RS7284 |
Unspecified |
| scaffold5715 |
35344 |
35386 |
+ |
(ATTAT)n |
Simple_repeat |
| scaffold5715 |
35918 |
35956 |
+ |
(GATTTCA)n |
Simple_repeat |
| scaffold5715 |
36877 |
36968 |
+ |
(TGTTGC)n |
Simple_repeat |
| scaffold5715 |
37757 |
38554 |
+ |
TY1_Copia |
TY1_Copia(TransposonPSI) |
| scaffold5715 |
38620 |
38987 |
+ |
Copia-107_Mad-I |
LTR/Copia |
| scaffold5715 |
39164 |
39940 |
+ |
Copia-107_Mad-I |
LTR/Copia |
| scaffold5715 |
40289 |
41900 |
+ |
Copia-107_Mad-I |
LTR/Copia |
| scaffold5715 |
44750 |
45041 |
- |
LTR-1_SBi-LTR |
LTR |
| scaffold5715 |
45203 |
45282 |
+ |
(TTCAG)n |
Simple_repeat |
| scaffold5715 |
45307 |
45358 |
+ |
(TTCAG)n |
Simple_repeat |
| scaffold5715 |
46779 |
47509 |
+ |
RS1132 |
Unspecified |
| scaffold5715 |
48127 |
48184 |
+ |
RS1174 |
Unspecified |
| scaffold5715 |
48224 |
48718 |
- |
RS3092 |
Unspecified |
| scaffold5715 |
48224 |
48647 |
+ |
RS2720 |
Unspecified |
| scaffold5715 |
48826 |
49384 |
- |
RS3695 |
Unspecified |
| scaffold5715 |
48956 |
49439 |
- |
RS1881 |
Unspecified |
| scaffold5715 |
50702 |
50964 |
- |
RS10913 |
Unspecified |
| scaffold5715 |
50721 |
51005 |
- |
RS7160 |
Unspecified |
| scaffold5715 |
54320 |
54544 |
- |
RS11092 |
Unspecified |
| scaffold5715 |
54801 |
54835 |
+ |
(GGT)n |
Simple_repeat |
| scaffold5715 |
55677 |
55726 |
+ |
A-rich |
Low_complexity |
| scaffold5715 |
55948 |
55971 |
+ |
(TTAG)n |
Simple_repeat |
| scaffold5715 |
56449 |
56474 |
- |
Gypsy-72-LTR_ZM |
LTR/Gypsy |
| scaffold5715 |
56475 |
56530 |
- |
COP14_I_MT-int |
LTR/Copia |
| scaffold5715 |
57053 |
57088 |
+ |
(ATATAA)n |
Simple_repeat |
| scaffold5715 |
58388 |
58438 |
+ |
A-rich |
Low_complexity |
| scaffold5715 |
58905 |
58961 |
+ |
(TATAA)n |
Simple_repeat |
| scaffold5715 |
59084 |
59150 |
+ |
(TTA)n |
Simple_repeat |
| scaffold5715 |
60396 |
61135 |
+ |
OSMAR1 |
DNA/TcMar-Stowaway |
| scaffold5715 |
61424 |
61462 |
+ |
(AATTTT)n |
Simple_repeat |
| scaffold5715 |
63203 |
63632 |
- |
RS5662 |
Unspecified |
| scaffold5715 |
63649 |
63687 |
+ |
A-rich |
Low_complexity |
| scaffold5715 |
63697 |
63765 |
+ |
GA-rich |
Low_complexity |
| scaffold5715 |
64882 |
64936 |
- |
RAM14_I_MT-int |
LTR/Gypsy |
| scaffold5715 |
65953 |
66016 |
+ |
(AATAATAT)n |
Simple_repeat |
| scaffold5715 |
65994 |
66017 |
+ |
(AATT)n |
Simple_repeat |
| scaffold5715 |
68792 |
69381 |
- |
L1-3_EPa |
LINE/L1 |
| scaffold5715 |
69552 |
69595 |
+ |
(TTCTTCA)n |
Simple_repeat |
| scaffold5715 |
69700 |
69729 |
+ |
(T)n |
Simple_repeat |
| scaffold5715 |
69895 |
69929 |
+ |
(T)n |
Simple_repeat |
| scaffold5715 |
71368 |
71398 |
+ |
GA-rich |
Low_complexity |
| scaffold5715 |
71407 |
71424 |
+ |
(A)n |
Simple_repeat |
| scaffold5715 |
71576 |
71611 |
+ |
(TTTTTAA)n |
Simple_repeat |
| scaffold5715 |
71617 |
72073 |
- |
RS3389 |
Unspecified |
| scaffold5715 |
72198 |
72270 |
- |
Copia-62_GM-LTR |
LTR/Copia |
| scaffold5715 |
72599 |
72657 |
+ |
(CTTTGCT)n |
Simple_repeat |
| scaffold5715 |
73612 |
73663 |
+ |
A-rich |
Low_complexity |
| scaffold5715 |
73796 |
73845 |
+ |
(CTCTTTC)n |
Simple_repeat |
| scaffold5715 |
74181 |
74453 |
- |
HELMET3 |
RC/Helitron |
| scaffold5715 |
74745 |
75101 |
- |
HELITRON7_OS |
RC/Helitron |
| scaffold5715 |
75241 |
75326 |
- |
Helitron5 |
RC/Helitron |
| scaffold5715 |
75589 |
75973 |
- |
RS6908 |
Unspecified |
| scaffold5715 |
76164 |
76206 |
+ |
(CTTTT)n |
Simple_repeat |
| scaffold5715 |
76414 |
76671 |
- |
RS4289 |
Unspecified |
| scaffold5715 |
78102 |
78364 |
- |
RS5335 |
Unspecified |
| scaffold5715 |
78824 |
79737 |
- |
PL808 |
Unspecified |
| scaffold5715 |
78824 |
79583 |
- |
PL355 |
Unspecified |
| scaffold5715 |
80046 |
80096 |
+ |
(GTGTTTC)n |
Simple_repeat |
| scaffold5715 |
80220 |
80508 |
- |
RS247 |
Unspecified |
| scaffold5715 |
80524 |
80752 |
- |
RS1602 |
Unspecified |
| scaffold5715 |
80887 |
80918 |
+ |
(ATATTG)n |
Simple_repeat |
| scaffold5715 |
81248 |
81297 |
+ |
(TTTATT)n |
Simple_repeat |
| scaffold5715 |
81914 |
81987 |
+ |
SZ-27LIKE |
LTR/Copia |
| scaffold5715 |
81928 |
81995 |
- |
COPI2_LTR |
LTR/Copia |
| scaffold5715 |
83289 |
83338 |
+ |
(TTTC)n |
Simple_repeat |
| scaffold5715 |
84045 |
84103 |
+ |
(TTTTGT)n |
Simple_repeat |
| scaffold5715 |
84334 |
84386 |
+ |
(GGTGTA)n |
Simple_repeat |
| scaffold5715 |
86039 |
86104 |
+ |
(TCTATG)n |
Simple_repeat |
| scaffold5715 |
86546 |
87632 |
- |
Gypsy16-VV_I-int |
LTR/Gypsy |
| scaffold5715 |
88067 |
88161 |
+ |
(TATGT)n |
Simple_repeat |
| scaffold5715 |
88555 |
89661 |
- |
Gypsy3-VV_I-int |
LTR/Gypsy |
| scaffold5715 |
93704 |
93818 |
- |
SZ-25_LTR |
LTR/Copia |
| scaffold5715 |
94705 |
94771 |
+ |
(AACAA)n |
Simple_repeat |
| scaffold5715 |
95652 |
95696 |
- |
MEGY-I_MT |
LTR/Gypsy |
| scaffold5715 |
96450 |
96487 |
+ |
(TTTTGAA)n |
Simple_repeat |
| scaffold5715 |
96548 |
96587 |
- |
Gypsy-10_Mad-I |
LTR/Gypsy |
| scaffold5715 |
97024 |
97118 |
- |
MEGY-I_MT |
LTR/Gypsy |
| scaffold5715 |
97571 |
98022 |
- |
MEGY-I_MT |
LTR/Gypsy |
| scaffold5715 |
98399 |
98466 |
+ |
COPI2_LTR |
LTR/Copia |
| scaffold5715 |
98407 |
98480 |
- |
SZ-27LIKE |
LTR/Copia |
| scaffold5715 |
98617 |
98702 |
+ |
PL286 |
Unspecified |
| scaffold5715 |
98696 |
99244 |
- |
PL219 |
Unspecified |
| scaffold5715 |
99406 |
100090 |
- |
Athila6B_I-int |
LTR/Gypsy |
| scaffold5715 |
99988 |
100090 |
- |
Athila6B_I-int |
LTR/Gypsy |
| scaffold5715 |
100339 |
101023 |
+ |
PL964 |
Unspecified |
| scaffold5715 |
101104 |
101153 |
- |
Gypsy-10_Mad-I |
LTR/Gypsy |
| scaffold5715 |
101521 |
101557 |
+ |
A-rich |
Low_complexity |