scaffold5718 Repeat List
| genome |
start |
end |
strand |
repeat-name |
repeat-class |
| scaffold5718 |
1 |
389 |
- |
PL903 |
Unspecified |
| scaffold5718 |
265 |
859 |
+ |
PL743 |
Unspecified |
| scaffold5718 |
904 |
937 |
+ |
(GTTCA)n |
Simple_repeat |
| scaffold5718 |
3733 |
5037 |
- |
gypsy |
gypsy(TransposonPSI) |
| scaffold5718 |
4004 |
4803 |
- |
Gypsy16-VV_I-int |
LTR/Gypsy |
| scaffold5718 |
5054 |
5294 |
- |
Gypsy16-VV_I-int |
LTR/Gypsy |
| scaffold5718 |
5389 |
6737 |
- |
Gypsy-38_Mad-I |
LTR/Gypsy |
| scaffold5718 |
7764 |
8310 |
- |
RS616 |
Unspecified |
| scaffold5718 |
8134 |
8665 |
+ |
PL880 |
Unspecified |
| scaffold5718 |
10082 |
10156 |
+ |
WHAM2_TM-int |
LTR/Gypsy |
| scaffold5718 |
10255 |
10480 |
+ |
WHAM2_TM-int |
LTR/Gypsy |
| scaffold5718 |
12408 |
12469 |
+ |
A-rich |
Low_complexity |
| scaffold5718 |
13034 |
13070 |
+ |
WHAM2_TM-int |
LTR/Gypsy |
| scaffold5718 |
13071 |
14335 |
+ |
RS288 |
Unspecified |
| scaffold5718 |
14351 |
14403 |
+ |
(GCTGT)n |
Simple_repeat |
| scaffold5718 |
15747 |
15789 |
+ |
(ATA)n |
Simple_repeat |
| scaffold5718 |
15854 |
15894 |
+ |
(TTTCT)n |
Simple_repeat |
| scaffold5718 |
16071 |
16113 |
+ |
(TATTA)n |
Simple_repeat |
| scaffold5718 |
16445 |
16844 |
- |
Copia-67_GM-I |
LTR/Copia |
| scaffold5718 |
16445 |
16952 |
- |
Copia-67_GM-I |
LTR/Copia |
| scaffold5718 |
16830 |
16952 |
+ |
RS120 |
Unspecified |
| scaffold5718 |
16962 |
17125 |
+ |
hAT-N16_ZM |
DNA/hAT-Ac |
| scaffold5718 |
17252 |
17304 |
+ |
(AGCTCG)n |
Simple_repeat |
| scaffold5718 |
17316 |
17482 |
- |
DS-RICE3N |
DNA/hAT-Ac |
| scaffold5718 |
17483 |
17512 |
+ |
(ATA)n |
Simple_repeat |
| scaffold5718 |
17562 |
17597 |
+ |
A-rich |
Low_complexity |
| scaffold5718 |
18536 |
18628 |
+ |
(GTT)n |
Simple_repeat |
| scaffold5718 |
19302 |
19369 |
+ |
(AATTTATA)n |
Simple_repeat |
| scaffold5718 |
19313 |
19345 |
+ |
(CTG)n |
Simple_repeat |
| scaffold5718 |
19991 |
20156 |
- |
RS17814 |
Unspecified |
| scaffold5718 |
20092 |
20519 |
+ |
PL733 |
Unspecified |
| scaffold5718 |
22920 |
23519 |
- |
Copia-92_ST-I |
LTR/Copia |
| scaffold5718 |
26252 |
26295 |
+ |
(TAATAT)n |
Simple_repeat |
| scaffold5718 |
26649 |
26913 |
+ |
RS10 |
Unspecified |
| scaffold5718 |
27048 |
27097 |
+ |
(AACAAG)n |
Simple_repeat |
| scaffold5718 |
27546 |
27671 |
- |
RS1293 |
Unspecified |
| scaffold5718 |
27675 |
27713 |
+ |
HAT-N10_Mad |
DNA/hAT-Ac |
| scaffold5718 |
27718 |
27757 |
+ |
RS463 |
Unspecified |
| scaffold5718 |
29302 |
29418 |
+ |
RS463 |
Unspecified |
| scaffold5718 |
29450 |
29689 |
- |
RS4 |
Unspecified |
| scaffold5718 |
29688 |
29999 |
+ |
RS463 |
Unspecified |
| scaffold5718 |
30102 |
30247 |
+ |
RS407 |
Unspecified |
| scaffold5718 |
30620 |
30701 |
- |
RS4042 |
Unspecified |
| scaffold5718 |
30965 |
31005 |
+ |
(TAATAAT)n |
Simple_repeat |
| scaffold5718 |
31010 |
31138 |
- |
RS4042 |
Unspecified |
| scaffold5718 |
31134 |
31175 |
+ |
RS96 |
Unspecified |
| scaffold5718 |
31430 |
31665 |
- |
RS4 |
Unspecified |
| scaffold5718 |
32146 |
32219 |
+ |
(TTT)n |
Simple_repeat |
| scaffold5718 |
33335 |
33377 |
+ |
(ATGTAT)n |
Simple_repeat |
| scaffold5718 |
34000 |
34144 |
+ |
PL206 |
Unspecified |
| scaffold5718 |
34001 |
34112 |
+ |
RS2734 |
Unspecified |
| scaffold5718 |
34151 |
34261 |
- |
RS2734 |
Unspecified |
| scaffold5718 |
34322 |
34363 |
+ |
A-rich |
Low_complexity |
| scaffold5718 |
34751 |
34804 |
+ |
(ATTTT)n |
Simple_repeat |
| scaffold5718 |
40244 |
40289 |
+ |
(AACTG)n |
Simple_repeat |
| scaffold5718 |
42435 |
42488 |
+ |
(GTAATT)n |
Simple_repeat |
| scaffold5718 |
44122 |
44169 |
+ |
(TTTAGAA)n |
Simple_repeat |
| scaffold5718 |
46011 |
46062 |
+ |
(GAAT)n |
Simple_repeat |
| scaffold5718 |
46523 |
46555 |
+ |
(ATAGA)n |
Simple_repeat |
| scaffold5718 |
46610 |
46748 |
- |
PL836 |
Unspecified |
| scaffold5718 |
47619 |
47821 |
- |
L1-6_STu |
LINE/L1 |
| scaffold5718 |
48104 |
48911 |
- |
L1-1_PTr |
LINE/L1 |
| scaffold5718 |
49819 |
49851 |
+ |
(ATTATA)n |
Simple_repeat |
| scaffold5718 |
50724 |
50815 |
+ |
(TA)n |
Simple_repeat |
| scaffold5718 |
51092 |
51438 |
+ |
RS215 |
Unspecified |
| scaffold5718 |
51437 |
51752 |
- |
RS245 |
Unspecified |
| scaffold5718 |
51865 |
53281 |
+ |
RS1686 |
Unspecified |
| scaffold5718 |
53291 |
53481 |
- |
ENSPM-6_ZM |
DNA/CMC-EnSpm |
| scaffold5718 |
53402 |
53582 |
+ |
EnSpm-17_SBi |
DNA/CMC-EnSpm |
| scaffold5718 |
53656 |
53849 |
+ |
RS2689 |
Unspecified |
| scaffold5718 |
54224 |
54278 |
+ |
(TTTA)n |
Simple_repeat |
| scaffold5718 |
54383 |
54453 |
+ |
RS1154 |
Unspecified |
| scaffold5718 |
54534 |
54599 |
+ |
(ATTATA)n |
Simple_repeat |
| scaffold5718 |
54684 |
54733 |
+ |
A-rich |
Low_complexity |
| scaffold5718 |
55740 |
55765 |
+ |
(TAT)n |
Simple_repeat |
| scaffold5718 |
56371 |
57420 |
- |
RS266 |
Unspecified |
| scaffold5718 |
57504 |
57769 |
- |
RS3832 |
Unspecified |
| scaffold5718 |
57792 |
59408 |
- |
RS265 |
Unspecified |
| scaffold5718 |
60314 |
60335 |
+ |
(TTGA)n |
Simple_repeat |
| scaffold5718 |
60484 |
61079 |
+ |
RS67 |
Unspecified |
| scaffold5718 |
60565 |
61188 |
+ |
RS67 |
Unspecified |
| scaffold5718 |
60630 |
61278 |
+ |
RS67 |
Unspecified |
| scaffold5718 |
61005 |
61324 |
+ |
RS67 |
Unspecified |
| scaffold5718 |
61392 |
61427 |
+ |
A-rich |
Low_complexity |
| scaffold5718 |
61636 |
61671 |
+ |
A-rich |
Low_complexity |
| scaffold5718 |
64365 |
64454 |
+ |
(AGGCTG)n |
Simple_repeat |
| scaffold5718 |
64460 |
64532 |
+ |
(GCTGAG)n |
Simple_repeat |
| scaffold5718 |
65071 |
65504 |
+ |
RS799 |
Unspecified |
| scaffold5718 |
65513 |
65935 |
+ |
PL345 |
Unspecified |
| scaffold5718 |
66300 |
66360 |
+ |
(TTGTTT)n |
Simple_repeat |
| scaffold5718 |
66553 |
66574 |
+ |
(TTTGTAT)n |
Simple_repeat |
| scaffold5718 |
66575 |
66608 |
+ |
(TTTGTG)n |
Simple_repeat |
| scaffold5718 |
66609 |
66647 |
+ |
(TTTGTAT)n |
Simple_repeat |
| scaffold5718 |
66936 |
66992 |
+ |
RS131 |
Unspecified |
| scaffold5718 |
66936 |
67003 |
- |
PL733 |
Unspecified |
| scaffold5718 |
66992 |
67366 |
- |
RS2571 |
Unspecified |
| scaffold5718 |
67537 |
67571 |
+ |
(CAATT)n |
Simple_repeat |
| scaffold5718 |
68486 |
68636 |
+ |
RS11647 |
Unspecified |
| scaffold5718 |
68642 |
68730 |
+ |
(ACATAC)n |
Simple_repeat |
| scaffold5718 |
68916 |
69081 |
+ |
RS13462 |
Unspecified |
| scaffold5718 |
69233 |
69285 |
+ |
(GAT)n |
Simple_repeat |
| scaffold5718 |
69491 |
69525 |
+ |
(ATT)n |
Simple_repeat |
| scaffold5718 |
69602 |
69662 |
- |
Gypsy-193_ZM-I |
LTR/Gypsy |
| scaffold5718 |
69828 |
70172 |
- |
RS5129 |
Unspecified |
| scaffold5718 |
70191 |
70600 |
- |
RS13863 |
Unspecified |
| scaffold5718 |
71230 |
71272 |
+ |
(ACTACTC)n |
Simple_repeat |
| scaffold5718 |
72076 |
73063 |
+ |
RS1390 |
Unspecified |
| scaffold5718 |
72969 |
73284 |
- |
RS2235 |
Unspecified |
| scaffold5718 |
73404 |
74085 |
+ |
RS253 |
Unspecified |
| scaffold5718 |
73635 |
74782 |
+ |
RS131 |
Unspecified |
| scaffold5718 |
74760 |
74943 |
- |
RS3425 |
Unspecified |
| scaffold5718 |
74796 |
75081 |
- |
RS4583 |
Unspecified |
| scaffold5718 |
75784 |
75934 |
+ |
RS11647 |
Unspecified |
| scaffold5718 |
76214 |
76379 |
+ |
RS13462 |
Unspecified |
| scaffold5718 |
76446 |
76481 |
+ |
GA-rich |
Low_complexity |
| scaffold5718 |
76531 |
76583 |
+ |
(GAT)n |
Simple_repeat |
| scaffold5718 |
76790 |
76820 |
+ |
(TTA)n |
Simple_repeat |