scaffold5776 Repeat List
| genome |
start |
end |
strand |
repeat-name |
repeat-class |
| scaffold5776 |
1 |
38 |
+ |
RS1041 |
Unspecified |
| scaffold5776 |
141 |
263 |
+ |
RS1468 |
Unspecified |
| scaffold5776 |
325 |
583 |
- |
RS3282 |
Unspecified |
| scaffold5776 |
479 |
909 |
- |
RS3282 |
Unspecified |
| scaffold5776 |
2403 |
2449 |
+ |
(TTTAA)n |
Simple_repeat |
| scaffold5776 |
2513 |
2556 |
+ |
(ATTTTAC)n |
Simple_repeat |
| scaffold5776 |
2915 |
2940 |
+ |
(T)n |
Simple_repeat |
| scaffold5776 |
2934 |
2974 |
+ |
(ATATAG)n |
Simple_repeat |
| scaffold5776 |
3706 |
3722 |
+ |
(A)n |
Simple_repeat |
| scaffold5776 |
4919 |
5074 |
- |
RS14776 |
Unspecified |
| scaffold5776 |
6067 |
6204 |
- |
RS13644 |
Unspecified |
| scaffold5776 |
6460 |
6492 |
+ |
A-rich |
Low_complexity |
| scaffold5776 |
7847 |
7865 |
+ |
(T)n |
Simple_repeat |
| scaffold5776 |
8312 |
8361 |
+ |
A-rich |
Low_complexity |
| scaffold5776 |
9809 |
9879 |
+ |
GA-rich |
Low_complexity |
| scaffold5776 |
10029 |
10066 |
+ |
(TCCTT)n |
Simple_repeat |
| scaffold5776 |
11189 |
11251 |
+ |
(T)n |
Simple_repeat |
| scaffold5776 |
14248 |
14293 |
+ |
A-rich |
Low_complexity |
| scaffold5776 |
14405 |
14433 |
+ |
(TTTCT)n |
Simple_repeat |
| scaffold5776 |
14442 |
14459 |
+ |
(A)n |
Simple_repeat |
| scaffold5776 |
14555 |
15379 |
+ |
TY1_Copia |
TY1_Copia(TransposonPSI) |
| scaffold5776 |
15578 |
15815 |
+ |
Copia-37_Mad-I |
LTR/Copia |
| scaffold5776 |
16067 |
16930 |
+ |
Copia-37_Mad-I |
LTR/Copia |
| scaffold5776 |
17266 |
18869 |
+ |
Copia-37_Mad-I |
LTR/Copia |
| scaffold5776 |
18460 |
18571 |
- |
RETROSAT3_I-int |
LTR/Gypsy |
| scaffold5776 |
19039 |
19084 |
+ |
A-rich |
Low_complexity |
| scaffold5776 |
19379 |
19406 |
+ |
(T)n |
Simple_repeat |
| scaffold5776 |
19950 |
19986 |
+ |
(TTTCTTT)n |
Simple_repeat |
| scaffold5776 |
19999 |
20036 |
+ |
A-rich |
Low_complexity |
| scaffold5776 |
20422 |
20494 |
+ |
Copia-3_PTri-I |
LTR/Copia |
| scaffold5776 |
20495 |
20635 |
+ |
Copia-3_PTri-I |
LTR/Copia |
| scaffold5776 |
20908 |
20934 |
+ |
(T)n |
Simple_repeat |
| scaffold5776 |
21755 |
21816 |
+ |
Copia-3_PTri-I |
LTR/Copia |
| scaffold5776 |
22667 |
22725 |
+ |
(AATTT)n |
Simple_repeat |
| scaffold5776 |
23731 |
23790 |
+ |
(AATTAA)n |
Simple_repeat |
| scaffold5776 |
24231 |
24271 |
- |
RS18032 |
Unspecified |
| scaffold5776 |
24240 |
24420 |
- |
RS5 |
Unspecified |
| scaffold5776 |
24662 |
24698 |
+ |
A-rich |
Low_complexity |
| scaffold5776 |
25254 |
25299 |
+ |
(AATTTT)n |
Simple_repeat |
| scaffold5776 |
25397 |
25477 |
+ |
(TTATA)n |
Simple_repeat |
| scaffold5776 |
27566 |
27610 |
+ |
(ATTA)n |
Simple_repeat |
| scaffold5776 |
29772 |
29820 |
+ |
(T)n |
Simple_repeat |
| scaffold5776 |
29911 |
29957 |
+ |
(T)n |
Simple_repeat |
| scaffold5776 |
35101 |
35142 |
+ |
(TTTG)n |
Simple_repeat |
| scaffold5776 |
35671 |
35720 |
+ |
(T)n |
Simple_repeat |
| scaffold5776 |
37728 |
37830 |
- |
RS16382 |
Unspecified |
| scaffold5776 |
37779 |
37858 |
+ |
RS14970 |
Unspecified |
| scaffold5776 |
38538 |
38611 |
+ |
A-rich |
Low_complexity |
| scaffold5776 |
38841 |
38907 |
- |
RS1323 |
Unspecified |
| scaffold5776 |
39206 |
39225 |
+ |
(A)n |
Simple_repeat |
| scaffold5776 |
40680 |
40700 |
+ |
(T)n |
Simple_repeat |
| scaffold5776 |
40812 |
41033 |
+ |
(T)n |
Simple_repeat |
| scaffold5776 |
40977 |
41033 |
+ |
(T)n |
Simple_repeat |
| scaffold5776 |
41238 |
41276 |
+ |
(GCATTTG)n |
Simple_repeat |
| scaffold5776 |
41800 |
41875 |
+ |
(A)n |
Simple_repeat |
| scaffold5776 |
42033 |
42073 |
+ |
A-rich |
Low_complexity |
| scaffold5776 |
42074 |
42109 |
+ |
(A)n |
Simple_repeat |
| scaffold5776 |
42232 |
42283 |
+ |
(TTCTCTTT)n |
Simple_repeat |
| scaffold5776 |
42695 |
42741 |
+ |
(ATGTTA)n |
Simple_repeat |
| scaffold5776 |
45153 |
45255 |
+ |
(TCGGG)n |
Simple_repeat |
| scaffold5776 |
45447 |
45490 |
+ |
(CGGGT)n |
Simple_repeat |
| scaffold5776 |
45684 |
45716 |
- |
RS710 |
Unspecified |
| scaffold5776 |
46847 |
46870 |
+ |
(A)n |
Simple_repeat |
| scaffold5776 |
46914 |
46992 |
+ |
A-rich |
Low_complexity |
| scaffold5776 |
47703 |
47738 |
+ |
(TTTTAA)n |
Simple_repeat |
| scaffold5776 |
48029 |
48051 |
+ |
(T)n |
Simple_repeat |
| scaffold5776 |
48154 |
48174 |
+ |
(T)n |
Simple_repeat |
| scaffold5776 |
48253 |
48325 |
+ |
(TTTATA)n |
Simple_repeat |
| scaffold5776 |
51431 |
51940 |
+ |
PL269 |
Unspecified |
| scaffold5776 |
55235 |
55930 |
+ |
RS63 |
Unspecified |
| scaffold5776 |
58582 |
58608 |
+ |
(GGC)n |
Simple_repeat |
| scaffold5776 |
61691 |
61756 |
+ |
PL517 |
Unspecified |
| scaffold5776 |
61721 |
61781 |
+ |
PL517 |
Unspecified |
| scaffold5776 |
63382 |
63442 |
+ |
A-rich |
Low_complexity |
| scaffold5776 |
63495 |
63513 |
+ |
(A)n |
Simple_repeat |
| scaffold5776 |
64232 |
64251 |
+ |
(T)n |
Simple_repeat |
| scaffold5776 |
64849 |
64913 |
+ |
(TCCCC)n |
Simple_repeat |
| scaffold5776 |
65127 |
65472 |
- |
PL9 |
Unspecified |
| scaffold5776 |
65477 |
65513 |
+ |
(CTTTC)n |
Simple_repeat |
| scaffold5776 |
66396 |
66476 |
+ |
(TCC)n |
Simple_repeat |
| scaffold5776 |
67842 |
67938 |
+ |
RS18358 |
Unspecified |
| scaffold5776 |
68388 |
68410 |
+ |
(TAA)n |
Simple_repeat |
| scaffold5776 |
68611 |
68664 |
+ |
(T)n |
Simple_repeat |
| scaffold5776 |
68691 |
68717 |
+ |
(A)n |
Simple_repeat |
| scaffold5776 |
68962 |
72567 |
- |
COP2_I_MT-int |
LTR/Copia |
| scaffold5776 |
75042 |
76205 |
+ |
LINE |
LINE(TransposonPSI) |
| scaffold5776 |
75309 |
75952 |
+ |
L1-1_GM |
LINE/L1 |