genome | start | end | strand | repeat-name | repeat-class |
---|---|---|---|---|---|
scaffold5784 | 3213 | 3239 | + | (TAAC)n | Simple_repeat |
scaffold5784 | 3570 | 3592 | + | (A)n | Simple_repeat |
scaffold5784 | 7437 | 7630 | - | RS4 | Unspecified |
scaffold5784 | 7437 | 7688 | - | RS15470 | Unspecified |
scaffold5784 | 8018 | 8042 | + | (GAG)n | Simple_repeat |
scaffold5784 | 8792 | 8831 | + | (TTTTGTA)n | Simple_repeat |
scaffold5784 | 10276 | 10323 | + | (ATATTTC)n | Simple_repeat |
scaffold5784 | 10714 | 10724 | + | (CGAAGA)n | Simple_repeat |
scaffold5784 | 10725 | 10747 | + | (ACG)n | Simple_repeat |
scaffold5784 | 10748 | 10776 | + | (CGAAGA)n | Simple_repeat |
scaffold5784 | 10754 | 10777 | + | (AAAG)n | Simple_repeat |
scaffold5784 | 10800 | 10840 | + | GA-rich | Low_complexity |
scaffold5784 | 11249 | 11648 | + | PL576 | Unspecified |
scaffold5784 | 11993 | 12047 | + | (ATTT)n | Simple_repeat |
scaffold5784 | 12245 | 12380 | + | PL438 | Unspecified |
scaffold5784 | 12378 | 12400 | + | (T)n | Simple_repeat |
scaffold5784 | 12818 | 12855 | + | (T)n | Simple_repeat |
scaffold5784 | 13500 | 13654 | - | RS7297 | Unspecified |
scaffold5784 | 13961 | 14117 | + | RS3094 | Unspecified |
scaffold5784 | 14041 | 14228 | + | RS3094 | Unspecified |
scaffold5784 | 14157 | 14364 | + | RS3094 | Unspecified |
scaffold5784 | 14267 | 14498 | + | RS3094 | Unspecified |
scaffold5784 | 14368 | 14566 | + | RS3094 | Unspecified |
scaffold5784 | 14425 | 14834 | + | RS3094 | Unspecified |
scaffold5784 | 15165 | 17446 | - | RS227 | Unspecified |
scaffold5784 | 16315 | 16348 | + | (TTG)n | Simple_repeat |
scaffold5784 | 16629 | 16705 | + | A-rich | Low_complexity |
scaffold5784 | 16684 | 16706 | + | (A)n | Simple_repeat |
scaffold5784 | 16867 | 16907 | + | (CCA)n | Simple_repeat |
scaffold5784 | 17219 | 17341 | + | RS10112 | Unspecified |
scaffold5784 | 17243 | 17348 | - | PL803 | Unspecified |
scaffold5784 | 17498 | 17531 | + | (CAT)n | Simple_repeat |
scaffold5784 | 17629 | 17652 | + | (TCA)n | Simple_repeat |
scaffold5784 | 18370 | 18457 | + | LTR-7_Mad-LTR | LTR |
scaffold5784 | 18577 | 18614 | + | A-rich | Low_complexity |
scaffold5784 | 18622 | 18873 | - | RS2064 | Unspecified |
scaffold5784 | 22575 | 22662 | + | LTR-7_Mad-LTR | LTR |
scaffold5784 | 22782 | 22819 | + | A-rich | Low_complexity |
scaffold5784 | 22827 | 23078 | - | RS2064 | Unspecified |
scaffold5784 | 27279 | 27296 | + | (T)n | Simple_repeat |
scaffold5784 | 29924 | 29966 | + | (TTATGA)n | Simple_repeat |
scaffold5784 | 34559 | 34594 | + | (TCGTT)n | Simple_repeat |
scaffold5784 | 34895 | 34931 | + | (TTATT)n | Simple_repeat |
scaffold5784 | 35619 | 35674 | + | RS987 | Unspecified |
scaffold5784 | 35627 | 35868 | - | RS4 | Unspecified |
scaffold5784 | 35871 | 35903 | + | A-rich | Low_complexity |
scaffold5784 | 36062 | 36099 | + | (CCT)n | Simple_repeat |
scaffold5784 | 36100 | 36137 | + | (CT)n | Simple_repeat |
scaffold5784 | 37710 | 37743 | + | (ATTCCA)n | Simple_repeat |
scaffold5784 | 37928 | 37950 | + | (TGT)n | Simple_repeat |
scaffold5784 | 37976 | 38013 | + | (GTA)n | Simple_repeat |
scaffold5784 | 38433 | 38534 | - | RS13324 | Unspecified |
scaffold5784 | 38912 | 39066 | + | (CCCGA)n | Simple_repeat |
scaffold5784 | 39090 | 39116 | + | (A)n | Simple_repeat |
scaffold5784 | 40349 | 40435 | + | (AAT)n | Simple_repeat |
scaffold5784 | 40611 | 41167 | - | RS2793 | Unspecified |
scaffold5784 | 42012 | 42061 | + | (TTTTAT)n | Simple_repeat |
scaffold5784 | 44378 | 44764 | - | Copia-32-I_VV | LTR/Copia |
scaffold5784 | 45088 | 45121 | + | (GTGATC)n | Simple_repeat |
scaffold5784 | 45204 | 45237 | + | (TTTTTAT)n | Simple_repeat |
scaffold5784 | 45475 | 45543 | - | RS16679 | Unspecified |
scaffold5784 | 45493 | 45558 | - | RS16679 | Unspecified |
scaffold5784 | 45599 | 45641 | + | (AAT)n | Simple_repeat |
scaffold5784 | 47115 | 47209 | - | RS13324 | Unspecified |
scaffold5784 | 47309 | 47403 | - | RS13324 | Unspecified |
scaffold5784 | 48071 | 48314 | - | PL421 | Unspecified |
scaffold5784 | 48071 | 48287 | - | PL13 | Unspecified |
scaffold5784 | 49269 | 49293 | + | (A)n | Simple_repeat |
scaffold5784 | 49366 | 49412 | + | A-rich | Low_complexity |
scaffold5784 | 50746 | 50838 | + | RS118 | Unspecified |
scaffold5784 | 50888 | 50963 | + | (TTTATTT)n | Simple_repeat |
scaffold5784 | 51378 | 51410 | + | (T)n | Simple_repeat |
scaffold5784 | 51530 | 51623 | - | RS73 | Unspecified |
scaffold5784 | 51625 | 51763 | - | RS73 | Unspecified |
scaffold5784 | 52902 | 52970 | + | A-rich | Low_complexity |
scaffold5784 | 53188 | 53384 | + | RS1059 | Unspecified |
scaffold5784 | 53386 | 54009 | + | PL180 | Unspecified |
scaffold5784 | 54198 | 55716 | - | RS488 | Unspecified |
scaffold5784 | 55422 | 55870 | - | RS1545 | Unspecified |
scaffold5784 | 55694 | 55909 | - | RS9613 | Unspecified |
scaffold5784 | 56304 | 56436 | - | TNT1_LTR | LTR/Copia |
scaffold5784 | 56780 | 58457 | - | COP18_I_MT-int | LTR/Copia |
scaffold5784 | 58619 | 60956 | - | COP18_I_MT-int | LTR/Copia |
scaffold5784 | 58619 | 60840 | - | COP18_I_MT-int | LTR/Copia |
scaffold5784 | 60801 | 60956 | - | RS2416 | Unspecified |
scaffold5784 | 60892 | 61169 | + | RS4364 | Unspecified |
scaffold5784 | 62249 | 62306 | + | (GTT)n | Simple_repeat |
scaffold5784 | 62953 | 62972 | + | (A)n | Simple_repeat |
scaffold5784 | 62997 | 63143 | + | helitronORF | helitronORF(TransposonPSI) |
scaffold5784 | 63454 | 63492 | + | (TGCTGT)n | Simple_repeat |
scaffold5784 | 63493 | 63680 | + | (GTT)n | Simple_repeat |
scaffold5784 | 63681 | 63722 | + | (TGCTGT)n | Simple_repeat |
scaffold5784 | 65428 | 65459 | + | (T)n | Simple_repeat |
scaffold5784 | 67949 | 68044 | + | RS16382 | Unspecified |
scaffold5784 | 68684 | 69207 | + | RS1900 | Unspecified |
scaffold5784 | 70699 | 71328 | + | PL413 | Unspecified |
scaffold5784 | 71373 | 71413 | + | (TTATA)n | Simple_repeat |
scaffold5784 | 71762 | 71834 | + | (AATT)n | Simple_repeat |
scaffold5784 | 71860 | 72118 | + | RS2105 | Unspecified |
scaffold5784 | 72992 | 73194 | + | RS2105 | Unspecified |
scaffold5784 | 73603 | 73868 | + | RS10 | Unspecified |
scaffold5784 | 75005 | 75054 | + | A-rich | Low_complexity |
scaffold5784 | 75840 | 75876 | + | (ATTTTTA)n | Simple_repeat |
scaffold5784 | 76277 | 76311 | + | (T)n | Simple_repeat |
scaffold5784 | 76467 | 76523 | + | (AAT)n | Simple_repeat |
scaffold5784 | 76622 | 76781 | + | RS4 | Unspecified |
scaffold5784 | 79156 | 79413 | + | (TATTAT)n | Simple_repeat |
scaffold5784 | 79791 | 79818 | + | A-rich | Low_complexity |
scaffold5784 | 79863 | 79902 | + | (AATA)n | Simple_repeat |
scaffold5784 | 79956 | 79986 | + | A-rich | Low_complexity |
scaffold5784 | 80293 | 80328 | + | (TGT)n | Simple_repeat |
scaffold5784 | 83361 | 83382 | + | (T)n | Simple_repeat |
scaffold5784 | 85985 | 86135 | + | MuDR-8_Mad | DNA/MULE-MuDR |
scaffold5784 | 86331 | 86419 | + | MuDR-8_Mad | DNA/MULE-MuDR |
scaffold5784 | 87752 | 87783 | + | A-rich | Low_complexity |
scaffold5784 | 89126 | 89131 | + | (ATAAAA)n | Simple_repeat |
scaffold5784 | 89132 | 89165 | + | A-rich | Low_complexity |
scaffold5784 | 89498 | 89537 | + | (T)n | Simple_repeat |
scaffold5784 | 90260 | 90342 | + | (CCA)n | Simple_repeat |
scaffold5784 | 90603 | 90640 | + | (AAAACG)n | Simple_repeat |
scaffold5784 | 93487 | 93690 | - | RS15244 | Unspecified |
scaffold5784 | 94338 | 94359 | + | (A)n | Simple_repeat |
scaffold5784 | 94470 | 94487 | + | (T)n | Simple_repeat |
scaffold5784 | 94613 | 94641 | + | (A)n | Simple_repeat |
scaffold5784 | 99899 | 100281 | - | PL301 | Unspecified |
scaffold5784 | 100627 | 100666 | + | (T)n | Simple_repeat |
scaffold5784 | 100763 | 100871 | - | RS10692 | Unspecified |
scaffold5784 | 100873 | 100960 | - | RS10692 | Unspecified |
scaffold5784 | 102041 | 103541 | - | LINE1-60_SBi | LINE/L1 |
scaffold5784 | 103728 | 103833 | - | LINE1-60_SBi | LINE/L1 |
scaffold5784 | 104779 | 104923 | - | SHALINE10_MT | LINE/L1 |
scaffold5784 | 105251 | 105289 | + | (TTAGCT)n | Simple_repeat |
scaffold5784 | 105426 | 105469 | + | (TTGATTA)n | Simple_repeat |
scaffold5784 | 106167 | 107241 | + | Gypsy-23_ST-I | LTR/Gypsy |
scaffold5784 | 108098 | 108120 | + | (TTG)n | Simple_repeat |
scaffold5784 | 108774 | 108864 | + | (TTG)n | Simple_repeat |
scaffold5784 | 109655 | 109747 | + | RS4475 | Unspecified |
scaffold5784 | 110148 | 110919 | - | RS1713 | Unspecified |
scaffold5784 | 111301 | 115168 | - | Copia-90_Mad-I | LTR/Copia |
scaffold5784 | 111564 | 115168 | - | Copia-90_Mad-I | LTR/Copia |
scaffold5784 | 115506 | 115663 | - | Copia-90_Mad-I | LTR/Copia |
scaffold5784 | 115745 | 116419 | - | Copia-90_Mad-I | LTR/Copia |
scaffold5784 | 116429 | 116455 | + | (AAAAT)n | Simple_repeat |
scaffold5784 | 116539 | 116588 | + | A-rich | Low_complexity |
scaffold5784 | 116926 | 116942 | + | (A)n | Simple_repeat |
scaffold5784 | 117600 | 117617 | + | (T)n | Simple_repeat |
scaffold5784 | 117706 | 117888 | - | RS7550 | Unspecified |
scaffold5784 | 118203 | 118234 | + | (AAATT)n | Simple_repeat |
scaffold5784 | 118316 | 118345 | + | (A)n | Simple_repeat |
scaffold5784 | 118448 | 118757 | + | RS96 | Unspecified |
scaffold5784 | 118924 | 118960 | + | (ATAAT)n | Simple_repeat |
scaffold5784 | 118961 | 118970 | + | (TATATAA)n | Simple_repeat |
scaffold5784 | 119446 | 119502 | + | (CAT)n | Simple_repeat |
scaffold5784 | 119624 | 120064 | - | RS218 | Unspecified |
scaffold5784 | 120355 | 120402 | + | (TTGACT)n | Simple_repeat |
scaffold5784 | 120659 | 120703 | + | (GATTT)n | Simple_repeat |
scaffold5784 | 121942 | 121971 | + | (ATAAT)n | Simple_repeat |
scaffold5784 | 122132 | 122160 | + | (T)n | Simple_repeat |
scaffold5784 | 122378 | 122434 | + | (CAT)n | Simple_repeat |
scaffold5784 | 125459 | 125527 | + | (A)n | Simple_repeat |
scaffold5784 | 129526 | 129554 | + | (A)n | Simple_repeat |
scaffold5784 | 130402 | 130591 | - | Copia-85_BRa-I | LTR/Copia |
scaffold5784 | 130806 | 130827 | + | (T)n | Simple_repeat |
scaffold5784 | 130875 | 131014 | - | Sat-1_CPa | Satellite |
scaffold5784 | 131142 | 132691 | - | OSCopia2_I-int | LTR/Copia |
scaffold5784 | 133069 | 133143 | + | (TAATAT)n | Simple_repeat |
scaffold5784 | 134027 | 135489 | + | PL568 | Unspecified |
scaffold5784 | 135914 | 135971 | + | (TCGTTG)n | Simple_repeat |
scaffold5784 | 139054 | 139179 | - | ATHILA-6_SBi-I | LTR/Gypsy |
scaffold5784 | 139563 | 139688 | - | ATHILA-6_SBi-I | LTR/Gypsy |
scaffold5784 | 140447 | 141025 | - | RS1210 | Unspecified |
scaffold5784 | 141328 | 141355 | + | GA-rich | Low_complexity |
scaffold5784 | 141612 | 141643 | + | G-rich | Low_complexity |
scaffold5784 | 142193 | 142257 | + | (TTGTTT)n | Simple_repeat |
scaffold5784 | 143386 | 143422 | + | (ATA)n | Simple_repeat |
scaffold5784 | 143662 | 143687 | + | (GGCC)n | Simple_repeat |
scaffold5784 | 144128 | 144881 | - | PL495 | Unspecified |
scaffold5784 | 144530 | 145122 | - | PL894 | Unspecified |
scaffold5784 | 145267 | 146154 | - | LINE | LINE(TransposonPSI) |
scaffold5784 | 145549 | 146051 | - | L1-5_STu | LINE/L1 |
scaffold5784 | 146091 | 146690 | - | LINE | LINE(TransposonPSI) |
scaffold5784 | 146158 | 146333 | - | ATLINE2 | LINE/L1 |
scaffold5784 | 146952 | 147243 | - | LTR2-ZM_LTR | LTR |
scaffold5784 | 148383 | 148469 | - | PL196 | Unspecified |
scaffold5784 | 148971 | 149045 | + | (AATAGA)n | Simple_repeat |
scaffold5784 | 150474 | 150512 | + | (T)n | Simple_repeat |
scaffold5784 | 152181 | 152582 | + | PL225 | Unspecified |
scaffold5784 | 152606 | 152659 | + | (GTT)n | Simple_repeat |
scaffold5784 | 153079 | 153147 | + | (TTTTCTA)n | Simple_repeat |
scaffold5784 | 153378 | 153550 | - | Ogre-VP1_I-int | LTR/Gypsy |
scaffold5784 | 154583 | 154617 | + | A-rich | Low_complexity |
scaffold5784 | 155773 | 155807 | + | (TTTA)n | Simple_repeat |
scaffold5784 | 156541 | 156735 | + | RS6352 | Unspecified |
scaffold5784 | 156770 | 157014 | - | RS11000 | Unspecified |
scaffold5784 | 157623 | 158026 | - | RS5522 | Unspecified |
scaffold5784 | 158136 | 158188 | + | (TA)n | Simple_repeat |
scaffold5784 | 160251 | 160753 | + | RS11908 | Unspecified |
scaffold5784 | 162532 | 162582 | - | RS5522 | Unspecified |
scaffold5784 | 166697 | 166766 | + | A-rich | Low_complexity |
scaffold5784 | 166783 | 166813 | + | (CCTTC)n | Simple_repeat |
scaffold5784 | 166865 | 166918 | + | GA-rich | Low_complexity |
scaffold5784 | 167670 | 167729 | + | GA-rich | Low_complexity |
scaffold5784 | 168031 | 168813 | - | RS19 | Unspecified |
scaffold5784 | 169336 | 169988 | - | PL919 | Unspecified |
scaffold5784 | 170004 | 170293 | - | PL486 | Unspecified |
scaffold5784 | 172081 | 172359 | - | RS1173 | Unspecified |
scaffold5784 | 173762 | 173874 | + | RS14931 | Unspecified |
scaffold5784 | 174405 | 174435 | + | (T)n | Simple_repeat |
scaffold5784 | 175127 | 175300 | + | TRAMET1 | DNA/TcMar-Stowaway |
scaffold5784 | 176079 | 176156 | + | (TAATA)n | Simple_repeat |
scaffold5784 | 177727 | 177888 | - | SHAMET | DNA/TcMar-Stowaway |
scaffold5784 | 178460 | 178530 | - | STOWAWAY42_OS | DNA/TcMar-Stowaway |
scaffold5784 | 178705 | 178825 | - | PL501 | Unspecified |
scaffold5784 | 179797 | 180098 | - | RS15463 | Unspecified |
scaffold5784 | 181364 | 181399 | + | (TGGTTT)n | Simple_repeat |
scaffold5784 | 181888 | 181910 | + | (T)n | Simple_repeat |
scaffold5784 | 182219 | 182485 | - | PL789 | Unspecified |
scaffold5784 | 182484 | 182936 | + | PL352 | Unspecified |
scaffold5784 | 182945 | 183126 | - | PL789 | Unspecified |
scaffold5784 | 182967 | 183177 | - | RS7149 | Unspecified |
scaffold5784 | 183191 | 183414 | + | RS2128 | Unspecified |
scaffold5784 | 183269 | 183522 | - | RS331 | Unspecified |
scaffold5784 | 183967 | 183984 | + | (A)n | Simple_repeat |
scaffold5784 | 184017 | 184332 | - | PL635 | Unspecified |
scaffold5784 | 184274 | 184341 | - | PL635 | Unspecified |
scaffold5784 | 184730 | 184791 | + | (ATATAGT)n | Simple_repeat |
scaffold5784 | 185233 | 185263 | + | (ATAAA)n | Simple_repeat |
scaffold5784 | 185597 | 185626 | + | (AAC)n | Simple_repeat |
scaffold5784 | 188729 | 188776 | + | (TTCTAC)n | Simple_repeat |
scaffold5784 | 189780 | 190006 | + | (CGTACC)n | Simple_repeat |
scaffold5784 | 189931 | 190006 | + | (CGTACC)n | Simple_repeat |
scaffold5784 | 191068 | 191404 | + | HAT-13_Mad | DNA/hAT-Ac |
scaffold5784 | 191583 | 191630 | + | (GTTT)n | Simple_repeat |
scaffold5784 | 191739 | 192116 | + | HAT-13_Mad | DNA/hAT-Ac |
scaffold5784 | 192349 | 192367 | + | (A)n | Simple_repeat |
scaffold5784 | 192449 | 192783 | + | HAT-13_Mad | DNA/hAT-Ac |
scaffold5784 | 192818 | 192880 | + | (TTT)n | Simple_repeat |
scaffold5784 | 192961 | 193008 | + | (GTTT)n | Simple_repeat |
scaffold5784 | 193117 | 193814 | + | HAT-13_Mad | DNA/hAT-Ac |
scaffold5784 | 194055 | 194336 | + | HAT-13_Mad | DNA/hAT-Ac |
scaffold5784 | 194597 | 194613 | + | (T)n | Simple_repeat |
scaffold5784 | 194886 | 194925 | + | (TTATTTG)n | Simple_repeat |
scaffold5784 | 195066 | 195127 | + | G-rich | Low_complexity |
scaffold5784 | 195739 | 195788 | + | Gypsy-10_Pru-LTR | LTR/Gypsy |
scaffold5784 | 196367 | 196557 | - | RS6985 | Unspecified |
scaffold5784 | 196708 | 196764 | + | A-rich | Low_complexity |
scaffold5784 | 197428 | 197465 | + | (AACACA)n | Simple_repeat |
scaffold5784 | 199503 | 199721 | + | PL574 | Unspecified |
scaffold5784 | 199816 | 200911 | - | RS412 | Unspecified |
scaffold5784 | 201230 | 201273 | + | (GTT)n | Simple_repeat |
scaffold5784 | 201884 | 201925 | + | (GTTGTTT)n | Simple_repeat |
scaffold5784 | 202325 | 202395 | + | (TTTACA)n | Simple_repeat |
scaffold5784 | 203004 | 203610 | - | PL651 | Unspecified |
scaffold5784 | 204483 | 204538 | + | (AATA)n | Simple_repeat |
scaffold5784 | 204579 | 204603 | + | (CA)n | Simple_repeat |
scaffold5784 | 204704 | 204734 | + | (ATAATG)n | Simple_repeat |
scaffold5784 | 204737 | 204832 | + | (ATA)n | Simple_repeat |
scaffold5784 | 205460 | 206377 | - | RS48 | Unspecified |
scaffold5784 | 206384 | 206551 | - | RS48 | Unspecified |
scaffold5784 | 206442 | 206609 | - | RS48 | Unspecified |
scaffold5784 | 206500 | 206668 | - | RS48 | Unspecified |
scaffold5784 | 206779 | 207004 | + | LTR2-ZM_LTR | LTR |
scaffold5784 | 208302 | 208629 | - | RS314 | Unspecified |
scaffold5784 | 209607 | 209670 | + | (TTA)n | Simple_repeat |
scaffold5784 | 209949 | 209965 | + | (T)n | Simple_repeat |
scaffold5784 | 210481 | 210519 | + | GA-rich | Low_complexity |
scaffold5784 | 210572 | 210610 | + | (TTTTGGGCC)n | Simple_repeat |
scaffold5784 | 212111 | 212185 | + | (AATTT)n | Simple_repeat |
scaffold5784 | 212837 | 213783 | + | ATIS112A | DNA/PIF-Harbinger |
scaffold5784 | 214109 | 214264 | + | RS6007 | Unspecified |
scaffold5784 | 214199 | 215008 | + | RS1445 | Unspecified |
scaffold5784 | 215221 | 215288 | + | (AATTAA)n | Simple_repeat |
scaffold5784 | 215818 | 215846 | + | (TC)n | Simple_repeat |
scaffold5784 | 216708 | 217057 | + | RS17824 | Unspecified |
scaffold5784 | 219941 | 220069 | + | RS3454 | Unspecified |
scaffold5784 | 220073 | 220809 | + | PL789 | Unspecified |
scaffold5784 | 220981 | 221036 | + | (ATTTAA)n | Simple_repeat |
scaffold5784 | 221207 | 221256 | + | A-rich | Low_complexity |
scaffold5784 | 221550 | 221607 | + | (CTCT)n | Simple_repeat |
scaffold5784 | 221669 | 222128 | + | RS1401 | Unspecified |
scaffold5784 | 221690 | 221960 | - | RS8394 | Unspecified |
scaffold5784 | 223314 | 223928 | - | RS1571 | Unspecified |
scaffold5784 | 223740 | 224075 | - | RS12368 | Unspecified |