scaffold5788 Repeat List
| genome |
start |
end |
strand |
repeat-name |
repeat-class |
| scaffold5788 |
485 |
520 |
+ |
(AAGC)n |
Simple_repeat |
| scaffold5788 |
1187 |
1214 |
+ |
(ATAAA)n |
Simple_repeat |
| scaffold5788 |
3659 |
3929 |
- |
RS6678 |
Unspecified |
| scaffold5788 |
3765 |
4015 |
- |
RS4338 |
Unspecified |
| scaffold5788 |
4111 |
4131 |
+ |
(TCT)n |
Simple_repeat |
| scaffold5788 |
4474 |
4538 |
- |
Gypsy18-PTR_I-int |
LTR/Gypsy |
| scaffold5788 |
4956 |
5416 |
- |
Gypsy18-PTR_I-int |
LTR/Gypsy |
| scaffold5788 |
5645 |
5672 |
- |
Gypsy-16_Mad-I |
LTR/Gypsy |
| scaffold5788 |
6037 |
6073 |
+ |
(TGGT)n |
Simple_repeat |
| scaffold5788 |
6082 |
6114 |
+ |
Gypsy-126_SBi-I |
LTR/Gypsy |
| scaffold5788 |
6084 |
6132 |
+ |
Gypsy-126_SBi-I |
LTR/Gypsy |
| scaffold5788 |
7316 |
7906 |
- |
PL469 |
Unspecified |
| scaffold5788 |
7915 |
7948 |
+ |
(T)n |
Simple_repeat |
| scaffold5788 |
8095 |
8150 |
+ |
A-rich |
Low_complexity |
| scaffold5788 |
10000 |
10043 |
+ |
(CAATATC)n |
Simple_repeat |
| scaffold5788 |
10133 |
10168 |
+ |
(ACA)n |
Simple_repeat |
| scaffold5788 |
11527 |
11675 |
+ |
RS64 |
Unspecified |
| scaffold5788 |
11674 |
12026 |
+ |
PL150 |
Unspecified |
| scaffold5788 |
15250 |
15327 |
- |
Gypsy-46_STu-I |
LTR/Gypsy |
| scaffold5788 |
15439 |
16015 |
- |
RS4884 |
Unspecified |
| scaffold5788 |
15525 |
16002 |
+ |
PL945 |
Unspecified |
| scaffold5788 |
16184 |
16467 |
- |
Gypsy-46_STu-I |
LTR/Gypsy |
| scaffold5788 |
18020 |
18884 |
- |
PL956 |
Unspecified |
| scaffold5788 |
19099 |
19288 |
- |
ATCOPIN_LTR |
LTR |
| scaffold5788 |
19120 |
19356 |
+ |
LTR-1_SBi-LTR |
LTR |
| scaffold5788 |
20135 |
20209 |
+ |
(TATACA)n |
Simple_repeat |
| scaffold5788 |
21368 |
21417 |
+ |
(ATTT)n |
Simple_repeat |
| scaffold5788 |
21759 |
21862 |
+ |
Gypsy-72-LTR_ZM |
LTR/Gypsy |
| scaffold5788 |
22336 |
22364 |
+ |
(T)n |
Simple_repeat |
| scaffold5788 |
23347 |
23384 |
+ |
(ATACTA)n |
Simple_repeat |
| scaffold5788 |
24587 |
24663 |
+ |
A-rich |
Low_complexity |
| scaffold5788 |
27596 |
27629 |
+ |
(TA)n |
Simple_repeat |
| scaffold5788 |
28417 |
28673 |
+ |
RS193 |
Unspecified |
| scaffold5788 |
29595 |
29944 |
+ |
RS17824 |
Unspecified |
| scaffold5788 |
31536 |
31590 |
+ |
(ATC)n |
Simple_repeat |
| scaffold5788 |
35015 |
35036 |
+ |
(T)n |
Simple_repeat |
| scaffold5788 |
35102 |
35137 |
+ |
(TGCGG)n |
Simple_repeat |
| scaffold5788 |
35966 |
35996 |
+ |
(T)n |
Simple_repeat |
| scaffold5788 |
37507 |
37647 |
- |
ATLINE1A |
LINE/L1 |
| scaffold5788 |
37741 |
37848 |
- |
CIN4E_ZM |
LINE/L1 |
| scaffold5788 |
37951 |
38841 |
- |
SHALINE10_MT |
LINE/L1 |
| scaffold5788 |
39601 |
39632 |
- |
LINE1-62B_SBi |
LINE/L1 |
| scaffold5788 |
41003 |
41066 |
+ |
Copia-2_TA-I |
LTR/Copia |
| scaffold5788 |
41707 |
41925 |
- |
Copia-3_PTri-I |
LTR/Copia |
| scaffold5788 |
41926 |
42012 |
- |
Copia-3_PTri-I |
LTR/Copia |
| scaffold5788 |
42767 |
43430 |
- |
RS637 |
Unspecified |
| scaffold5788 |
44094 |
44645 |
+ |
RS72 |
Unspecified |
| scaffold5788 |
46868 |
46908 |
+ |
(CAGCCT)n |
Simple_repeat |
| scaffold5788 |
49143 |
49574 |
- |
RS684 |
Unspecified |
| scaffold5788 |
49394 |
49826 |
- |
RS684 |
Unspecified |
| scaffold5788 |
49826 |
50065 |
- |
RS10387 |
Unspecified |
| scaffold5788 |
50217 |
50874 |
- |
RS4105 |
Unspecified |
| scaffold5788 |
51008 |
51283 |
+ |
RS110 |
Unspecified |
| scaffold5788 |
51284 |
52293 |
- |
RS684 |
Unspecified |
| scaffold5788 |
51551 |
52433 |
- |
RS1282 |
Unspecified |
| scaffold5788 |
52440 |
52572 |
- |
RS1282 |
Unspecified |
| scaffold5788 |
52557 |
52602 |
- |
RS1282 |
Unspecified |
| scaffold5788 |
52875 |
52921 |
+ |
CINFUL3_I-int |
LTR/Gypsy |
| scaffold5788 |
55123 |
55257 |
- |
PL643 |
Unspecified |
| scaffold5788 |
55254 |
55333 |
+ |
PL643 |
Unspecified |
| scaffold5788 |
55367 |
55491 |
- |
MEGY-I_MT |
LTR/Gypsy |
| scaffold5788 |
56070 |
56126 |
+ |
(TTCTGT)n |
Simple_repeat |
| scaffold5788 |
56862 |
56896 |
+ |
A-rich |
Low_complexity |
| scaffold5788 |
58209 |
58250 |
+ |
A-rich |
Low_complexity |
| scaffold5788 |
58257 |
58283 |
- |
Gypsy-16_Mad-I |
LTR/Gypsy |
| scaffold5788 |
58885 |
58918 |
+ |
(GTTCT)n |
Simple_repeat |