scaffold5817 Repeat List
| genome |
start |
end |
strand |
repeat-name |
repeat-class |
| scaffold5817 |
214 |
548 |
+ |
RS4864 |
Unspecified |
| scaffold5817 |
344 |
631 |
- |
RS1919 |
Unspecified |
| scaffold5817 |
640 |
1152 |
- |
RS325 |
Unspecified |
| scaffold5817 |
891 |
1231 |
+ |
RS458 |
Unspecified |
| scaffold5817 |
1363 |
1404 |
+ |
(TTC)n |
Simple_repeat |
| scaffold5817 |
3256 |
3374 |
- |
RS11288 |
Unspecified |
| scaffold5817 |
3473 |
3769 |
+ |
RS8961 |
Unspecified |
| scaffold5817 |
4258 |
4375 |
- |
RS11288 |
Unspecified |
| scaffold5817 |
4434 |
4729 |
+ |
RS8961 |
Unspecified |
| scaffold5817 |
5361 |
5583 |
+ |
RS4306 |
Unspecified |
| scaffold5817 |
5634 |
5862 |
+ |
RS4064 |
Unspecified |
| scaffold5817 |
6450 |
6584 |
+ |
RS4543 |
Unspecified |
| scaffold5817 |
7496 |
7565 |
+ |
(TTA)n |
Simple_repeat |
| scaffold5817 |
7496 |
7678 |
+ |
(TTA)n |
Simple_repeat |
| scaffold5817 |
7540 |
7678 |
- |
RS17927 |
Unspecified |
| scaffold5817 |
7748 |
7817 |
+ |
(TTA)n |
Simple_repeat |
| scaffold5817 |
8285 |
8680 |
+ |
RS6842 |
Unspecified |
| scaffold5817 |
8752 |
8778 |
+ |
(AAC)n |
Simple_repeat |
| scaffold5817 |
10611 |
10689 |
+ |
(AATTAAT)n |
Simple_repeat |
| scaffold5817 |
10611 |
10753 |
+ |
(AATTAAT)n |
Simple_repeat |
| scaffold5817 |
10677 |
10753 |
- |
RS16206 |
Unspecified |
| scaffold5817 |
10744 |
10865 |
+ |
RS4543 |
Unspecified |
| scaffold5817 |
10781 |
10890 |
+ |
RS12096 |
Unspecified |
| scaffold5817 |
11037 |
11690 |
- |
RS3896 |
Unspecified |
| scaffold5817 |
11869 |
12125 |
+ |
RS3896 |
Unspecified |
| scaffold5817 |
12237 |
12419 |
- |
RS5504 |
Unspecified |
| scaffold5817 |
14327 |
14384 |
+ |
SHALINE6_MT |
LINE/L1 |
| scaffold5817 |
14627 |
15673 |
+ |
L1-5_STu |
LINE/L1 |
| scaffold5817 |
17129 |
17188 |
+ |
PIGY-I_PS |
LTR/Gypsy |
| scaffold5817 |
17278 |
17309 |
+ |
(A)n |
Simple_repeat |
| scaffold5817 |
18716 |
18744 |
+ |
STOWAWAY51_OS |
DNA/TcMar-Stowaway |
| scaffold5817 |
18992 |
19074 |
- |
HADES_TA |
DNA/TcMar-Stowaway |
| scaffold5817 |
19106 |
19326 |
- |
RS2270 |
Unspecified |
| scaffold5817 |
19774 |
20405 |
+ |
RS2010 |
Unspecified |
| scaffold5817 |
22676 |
22757 |
+ |
(TATG)n |
Simple_repeat |
| scaffold5817 |
25134 |
25202 |
- |
PL1 |
Unspecified |
| scaffold5817 |
25331 |
25362 |
+ |
(TC)n |
Simple_repeat |
| scaffold5817 |
25949 |
26004 |
+ |
(A)n |
Simple_repeat |
| scaffold5817 |
26240 |
26307 |
+ |
(TAA)n |
Simple_repeat |
| scaffold5817 |
28972 |
30351 |
+ |
LINE |
LINE(TransposonPSI) |
| scaffold5817 |
29293 |
30257 |
+ |
L1-1_GM |
LINE/L1 |
| scaffold5817 |
32955 |
33084 |
+ |
PL827 |
Unspecified |
| scaffold5817 |
33028 |
33188 |
+ |
RS48 |
Unspecified |
| scaffold5817 |
33087 |
33254 |
+ |
RS48 |
Unspecified |
| scaffold5817 |
33203 |
33664 |
+ |
RS48 |
Unspecified |
| scaffold5817 |
34243 |
34274 |
+ |
(TC)n |
Simple_repeat |
| scaffold5817 |
34581 |
34621 |
+ |
(AATT)n |
Simple_repeat |
| scaffold5817 |
36931 |
36956 |
+ |
(T)n |
Simple_repeat |
| scaffold5817 |
37404 |
37448 |
+ |
(AATTT)n |
Simple_repeat |
| scaffold5817 |
37969 |
37996 |
+ |
(T)n |
Simple_repeat |
| scaffold5817 |
38712 |
38793 |
- |
RS356 |
Unspecified |
| scaffold5817 |
38792 |
38880 |
- |
RS356 |
Unspecified |
| scaffold5817 |
38893 |
39007 |
+ |
TEMPINDAS-N1_SB |
DNA/hAT-Ac |
| scaffold5817 |
39108 |
39509 |
- |
PL825 |
Unspecified |
| scaffold5817 |
41094 |
41160 |
+ |
(TATTTG)n |
Simple_repeat |
| scaffold5817 |
42942 |
42970 |
+ |
(TTTAA)n |
Simple_repeat |
| scaffold5817 |
43256 |
43300 |
+ |
A-rich |
Low_complexity |
| scaffold5817 |
43980 |
44005 |
+ |
(TAAAA)n |
Simple_repeat |
| scaffold5817 |
45328 |
45358 |
+ |
(ATATAG)n |
Simple_repeat |
| scaffold5817 |
45359 |
45580 |
- |
RS1985 |
Unspecified |
| scaffold5817 |
45388 |
45547 |
- |
RS4008 |
Unspecified |
| scaffold5817 |
45834 |
46145 |
+ |
RS10853 |
Unspecified |
| scaffold5817 |
46464 |
46685 |
+ |
RS14203 |
Unspecified |
| scaffold5817 |
48239 |
48263 |
+ |
(A)n |
Simple_repeat |
| scaffold5817 |
52094 |
52325 |
- |
RS4978 |
Unspecified |
| scaffold5817 |
52438 |
52545 |
+ |
RS8356 |
Unspecified |
| scaffold5817 |
53156 |
54761 |
- |
Copia-36_Pru-I |
LTR/Copia |
| scaffold5817 |
55142 |
56017 |
- |
Copia-6_ST-I |
LTR/Copia |
| scaffold5817 |
56173 |
56346 |
- |
Copia-6_ST-I |
LTR/Copia |
| scaffold5817 |
56435 |
56562 |
- |
Copia-6_ST-I |
LTR/Copia |
| scaffold5817 |
57697 |
57739 |
+ |
GA-rich |
Low_complexity |
| scaffold5817 |
59058 |
59183 |
- |
PL727 |
Unspecified |
| scaffold5817 |
59497 |
59532 |
+ |
(A)n |
Simple_repeat |
| scaffold5817 |
59778 |
59825 |
+ |
(GAAGAT)n |
Simple_repeat |
| scaffold5817 |
60819 |
60855 |
+ |
(GGCCC)n |
Simple_repeat |
| scaffold5817 |
61201 |
61234 |
+ |
(TATAA)n |
Simple_repeat |
| scaffold5817 |
61282 |
61757 |
+ |
RS2879 |
Unspecified |
| scaffold5817 |
62505 |
62535 |
+ |
(GGCCC)n |
Simple_repeat |
| scaffold5817 |
62674 |
62718 |
- |
RS1450 |
Unspecified |
| scaffold5817 |
62715 |
62850 |
- |
RS1167 |
Unspecified |
| scaffold5817 |
64458 |
64495 |
+ |
(GGCGG)n |
Simple_repeat |
| scaffold5817 |
64653 |
65035 |
- |
RS1450 |
Unspecified |
| scaffold5817 |
65311 |
65369 |
+ |
RS1450 |
Unspecified |
| scaffold5817 |
66536 |
66590 |
+ |
(AACATA)n |
Simple_repeat |
| scaffold5817 |
66679 |
66720 |
+ |
(GCCG)n |
Simple_repeat |
| scaffold5817 |
67044 |
67096 |
- |
MEGY-I_MT |
LTR/Gypsy |
| scaffold5817 |
67648 |
67723 |
+ |
(CTTTTT)n |
Simple_repeat |
| scaffold5817 |
68391 |
68827 |
- |
RS78 |
Unspecified |
| scaffold5817 |
69585 |
70259 |
- |
MEGY-I_MT |
LTR/Gypsy |
| scaffold5817 |
69585 |
70108 |
- |
MEGY-I_MT |
LTR/Gypsy |
| scaffold5817 |
70071 |
70259 |
- |
RS6781 |
Unspecified |
| scaffold5817 |
70649 |
70676 |
+ |
(GGGT)n |
Simple_repeat |
| scaffold5817 |
72538 |
72584 |
+ |
A-rich |
Low_complexity |
| scaffold5817 |
73207 |
73491 |
+ |
RS8 |
Unspecified |
| scaffold5817 |
73503 |
74019 |
+ |
PL560 |
Unspecified |
| scaffold5817 |
73819 |
74377 |
+ |
PL560 |
Unspecified |
| scaffold5817 |
76364 |
76409 |
+ |
(T)n |
Simple_repeat |
| scaffold5817 |
77559 |
77787 |
- |
RS18 |
Unspecified |
| scaffold5817 |
78205 |
78237 |
+ |
(TTAT)n |
Simple_repeat |
| scaffold5817 |
78732 |
79293 |
+ |
PL8 |
Unspecified |
| scaffold5817 |
79194 |
79310 |
+ |
PL683 |
Unspecified |
| scaffold5817 |
79591 |
79605 |
+ |
(AATCATT)n |
Simple_repeat |
| scaffold5817 |
79606 |
79647 |
+ |
(TAAT)n |
Simple_repeat |
| scaffold5817 |
79648 |
79669 |
+ |
(AATCATT)n |
Simple_repeat |
| scaffold5817 |
79885 |
79933 |
+ |
(TC)n |
Simple_repeat |
| scaffold5817 |
81931 |
81954 |
+ |
(TGT)n |
Simple_repeat |
| scaffold5817 |
84223 |
84267 |
+ |
A-rich |
Low_complexity |
| scaffold5817 |
84811 |
85069 |
- |
RS237 |
Unspecified |
| scaffold5817 |
85320 |
85370 |
+ |
(A)n |
Simple_repeat |
| scaffold5817 |
85890 |
85979 |
+ |
(TTTTAT)n |
Simple_repeat |
| scaffold5817 |
87118 |
87343 |
- |
RS16799 |
Unspecified |
| scaffold5817 |
87438 |
87465 |
+ |
(A)n |
Simple_repeat |
| scaffold5817 |
87762 |
87809 |
+ |
PL375 |
Unspecified |
| scaffold5817 |
88039 |
88085 |
+ |
(GGTG)n |
Simple_repeat |
| scaffold5817 |
88345 |
88416 |
+ |
(T)n |
Simple_repeat |
| scaffold5817 |
88473 |
88543 |
+ |
(GGT)n |
Simple_repeat |
| scaffold5817 |
88629 |
88680 |
+ |
GA-rich |
Low_complexity |
| scaffold5817 |
88808 |
88894 |
+ |
(T)n |
Simple_repeat |
| scaffold5817 |
89042 |
89076 |
+ |
(TTATTTT)n |
Simple_repeat |
| scaffold5817 |
89145 |
89177 |
+ |
A-rich |
Low_complexity |
| scaffold5817 |
89591 |
89731 |
+ |
(TCTGAAGTTT)n |
Simple_repeat |
| scaffold5817 |
89748 |
89913 |
+ |
PL298 |
Unspecified |
| scaffold5817 |
89845 |
90022 |
+ |
PL729 |
Unspecified |
| scaffold5817 |
90045 |
90320 |
+ |
(AAT)n |
Simple_repeat |
| scaffold5817 |
90045 |
90086 |
+ |
(AAT)n |
Simple_repeat |
| scaffold5817 |
90045 |
90353 |
+ |
(AAT)n |
Simple_repeat |
| scaffold5817 |
90073 |
90320 |
+ |
PL298 |
Unspecified |
| scaffold5817 |
90073 |
90353 |
+ |
PL298 |
Unspecified |
| scaffold5817 |
90335 |
90466 |
+ |
(GAAGTTTTCT)n |
Simple_repeat |
| scaffold5817 |
90374 |
90466 |
+ |
(GAAGTTTTCT)n |
Simple_repeat |
| scaffold5817 |
90611 |
90676 |
+ |
(AATA)n |
Simple_repeat |
| scaffold5817 |
90767 |
90843 |
+ |
(TTTC)n |
Simple_repeat |
| scaffold5817 |
91010 |
91034 |
+ |
(ATTA)n |
Simple_repeat |
| scaffold5817 |
91083 |
91116 |
+ |
(T)n |
Simple_repeat |
| scaffold5817 |
91475 |
91744 |
+ |
RS106 |
Unspecified |
| scaffold5817 |
91781 |
91821 |
+ |
(TATATCT)n |
Simple_repeat |
| scaffold5817 |
92922 |
92940 |
+ |
(T)n |
Simple_repeat |
| scaffold5817 |
98887 |
98925 |
+ |
A-rich |
Low_complexity |
| scaffold5817 |
99548 |
99573 |
+ |
(T)n |
Simple_repeat |
| scaffold5817 |
100178 |
100625 |
+ |
RS1919 |
Unspecified |
| scaffold5817 |
100666 |
100856 |
+ |
PL859 |
Unspecified |
| scaffold5817 |
101697 |
101869 |
+ |
RS759 |
Unspecified |
| scaffold5817 |
101873 |
101937 |
+ |
PL859 |
Unspecified |
| scaffold5817 |
101943 |
102103 |
- |
RS622 |
Unspecified |
| scaffold5817 |
102237 |
102478 |
- |
RS13726 |
Unspecified |
| scaffold5817 |
102737 |
104311 |
- |
Copia-51_VV-I |
LTR/Copia |
| scaffold5817 |
104753 |
105517 |
- |
Copia-50_ST-I |
LTR/Copia |
| scaffold5817 |
105856 |
105921 |
- |
Copia-50_ST-I |
LTR/Copia |
| scaffold5817 |
106810 |
107196 |
- |
TY1_Copia |
TY1_Copia(TransposonPSI) |
| scaffold5817 |
106815 |
106878 |
- |
Copia-50_ST-I |
LTR/Copia |
| scaffold5817 |
107419 |
107660 |
- |
RS13726 |
Unspecified |
| scaffold5817 |
108400 |
108777 |
- |
RS322 |
Unspecified |
| scaffold5817 |
108858 |
108919 |
- |
RS7008 |
Unspecified |
| scaffold5817 |
109247 |
109768 |
- |
RS1275 |
Unspecified |
| scaffold5817 |
109881 |
111361 |
- |
Copia-101_Mad-I |
LTR/Copia |
| scaffold5817 |
111351 |
111791 |
- |
Copia-101_Mad-I |
LTR/Copia |
| scaffold5817 |
111899 |
113694 |
- |
Copia-101_Mad-I |
LTR/Copia |
| scaffold5817 |
114019 |
114639 |
- |
RS1296 |
Unspecified |
| scaffold5817 |
114622 |
114747 |
+ |
RS7033 |
Unspecified |
| scaffold5817 |
115199 |
115395 |
+ |
RS8043 |
Unspecified |
| scaffold5817 |
115225 |
115816 |
- |
RS1275 |
Unspecified |
| scaffold5817 |
115999 |
116050 |
+ |
(T)n |
Simple_repeat |
| scaffold5817 |
116052 |
116166 |
+ |
RS14475 |
Unspecified |
| scaffold5817 |
116436 |
116466 |
+ |
A-rich |
Low_complexity |
| scaffold5817 |
116470 |
116617 |
+ |
(T)n |
Simple_repeat |
| scaffold5817 |
116599 |
116617 |
+ |
(T)n |
Simple_repeat |
| scaffold5817 |
117346 |
117371 |
+ |
(T)n |
Simple_repeat |
| scaffold5817 |
117606 |
117633 |
+ |
(T)n |
Simple_repeat |
| scaffold5817 |
117971 |
118024 |
+ |
A-rich |
Low_complexity |
| scaffold5817 |
118130 |
118156 |
+ |
(T)n |
Simple_repeat |
| scaffold5817 |
118380 |
118419 |
+ |
(CCA)n |
Simple_repeat |
| scaffold5817 |
118614 |
118731 |
+ |
RS5600 |
Unspecified |
| scaffold5817 |
119059 |
119290 |
+ |
PL688 |
Unspecified |
| scaffold5817 |
119544 |
119609 |
+ |
(AATTAA)n |
Simple_repeat |
| scaffold5817 |
120236 |
120452 |
- |
RS13089 |
Unspecified |
| scaffold5817 |
120278 |
120472 |
+ |
RS818 |
Unspecified |
| scaffold5817 |
120298 |
120494 |
+ |
RS1140 |
Unspecified |
| scaffold5817 |
120631 |
120780 |
+ |
RS2138 |
Unspecified |
| scaffold5817 |
120794 |
122025 |
- |
EnSpm-1_GM |
DNA/CMC-EnSpm |
| scaffold5817 |
122400 |
122479 |
+ |
RS2695 |
Unspecified |
| scaffold5817 |
122734 |
122792 |
+ |
(ATA)n |
Simple_repeat |
| scaffold5817 |
122846 |
122885 |
+ |
(TTTCT)n |
Simple_repeat |
| scaffold5817 |
123066 |
123108 |
+ |
(TATTA)n |
Simple_repeat |
| scaffold5817 |
123389 |
128041 |
- |
Copia-101_Mad-I |
LTR/Copia |
| scaffold5817 |
128672 |
128705 |
+ |
(A)n |
Simple_repeat |
| scaffold5817 |
128931 |
128973 |
+ |
(ATA)n |
Simple_repeat |
| scaffold5817 |
129037 |
129076 |
+ |
(TTTCT)n |
Simple_repeat |
| scaffold5817 |
129257 |
129299 |
+ |
(TATTA)n |
Simple_repeat |
| scaffold5817 |
130938 |
131017 |
- |
RS3161 |
Unspecified |
| scaffold5817 |
131294 |
131318 |
+ |
(T)n |
Simple_repeat |
| scaffold5817 |
131347 |
131368 |
+ |
(TTATTAA)n |
Simple_repeat |
| scaffold5817 |
131369 |
131416 |
+ |
(TTA)n |
Simple_repeat |
| scaffold5817 |
131438 |
131581 |
- |
RS3161 |
Unspecified |
| scaffold5817 |
131627 |
131783 |
- |
PL690 |
Unspecified |
| scaffold5817 |
132042 |
132073 |
+ |
(T)n |
Simple_repeat |
| scaffold5817 |
132073 |
132120 |
+ |
(TAA)n |
Simple_repeat |
| scaffold5817 |
132183 |
132221 |
+ |
A-rich |
Low_complexity |
| scaffold5817 |
132310 |
132560 |
+ |
RS677 |
Unspecified |
| scaffold5817 |
132861 |
132918 |
+ |
(TTTTTGT)n |
Simple_repeat |
| scaffold5817 |
133525 |
134314 |
- |
RS123 |
Unspecified |