scaffold6111 Repeat List
| genome |
start |
end |
strand |
repeat-name |
repeat-class |
| scaffold6111 |
1 |
194 |
+ |
RS1091 |
Unspecified |
| scaffold6111 |
195 |
331 |
+ |
PL622 |
Unspecified |
| scaffold6111 |
400 |
482 |
+ |
HAT-N10_Mad |
DNA/hAT-Ac |
| scaffold6111 |
1057 |
1100 |
- |
LTR-7_Mad-LTR |
LTR |
| scaffold6111 |
2077 |
2121 |
+ |
(TTATTC)n |
Simple_repeat |
| scaffold6111 |
2377 |
2573 |
+ |
(CAGTT)n |
Simple_repeat |
| scaffold6111 |
2377 |
2640 |
+ |
(CAGTT)n |
Simple_repeat |
| scaffold6111 |
2557 |
2640 |
- |
RS14977 |
Unspecified |
| scaffold6111 |
2869 |
3088 |
+ |
RS347 |
Unspecified |
| scaffold6111 |
3407 |
3427 |
+ |
(TAT)n |
Simple_repeat |
| scaffold6111 |
3499 |
3546 |
- |
RS4 |
Unspecified |
| scaffold6111 |
3563 |
3614 |
+ |
(AATTTAG)n |
Simple_repeat |
| scaffold6111 |
3816 |
4024 |
- |
RS4 |
Unspecified |
| scaffold6111 |
4139 |
4172 |
+ |
A-rich |
Low_complexity |
| scaffold6111 |
4946 |
5049 |
+ |
RS3146 |
Unspecified |
| scaffold6111 |
4954 |
5066 |
+ |
RS18363 |
Unspecified |
| scaffold6111 |
5710 |
5786 |
+ |
Copia-58_VV-LTR |
LTR/Copia |
| scaffold6111 |
5723 |
5734 |
+ |
RTE-1B_Mad |
LINE/RTE-BovB |
| scaffold6111 |
5735 |
5798 |
+ |
Gypsy-32_Mad-LTR |
LTR/Gypsy |
| scaffold6111 |
6080 |
6124 |
+ |
(CT)n |
Simple_repeat |
| scaffold6111 |
6372 |
6477 |
+ |
(TTCAGAAAAC)n |
Simple_repeat |
| scaffold6111 |
6484 |
6556 |
+ |
(AAT)n |
Simple_repeat |
| scaffold6111 |
7864 |
7994 |
+ |
(ATT)n |
Simple_repeat |
| scaffold6111 |
7995 |
8021 |
+ |
(AAT)n |
Simple_repeat |
| scaffold6111 |
8199 |
8237 |
+ |
A-rich |
Low_complexity |
| scaffold6111 |
9205 |
9378 |
- |
SHAMET |
DNA/TcMar-Stowaway |
| scaffold6111 |
9763 |
9795 |
+ |
(ATTT)n |
Simple_repeat |
| scaffold6111 |
10605 |
10627 |
+ |
(T)n |
Simple_repeat |
| scaffold6111 |
10698 |
10727 |
+ |
(CTTTT)n |
Simple_repeat |
| scaffold6111 |
13906 |
13949 |
+ |
A-rich |
Low_complexity |
| scaffold6111 |
14015 |
14031 |
+ |
(A)n |
Simple_repeat |
| scaffold6111 |
14142 |
14166 |
+ |
(TAT)n |
Simple_repeat |
| scaffold6111 |
14269 |
14561 |
+ |
RS888 |
Unspecified |
| scaffold6111 |
14843 |
14877 |
+ |
(TATTTTA)n |
Simple_repeat |
| scaffold6111 |
16588 |
16611 |
+ |
(A)n |
Simple_repeat |
| scaffold6111 |
16850 |
16883 |
+ |
(TC)n |
Simple_repeat |
| scaffold6111 |
17647 |
17684 |
+ |
(TTTA)n |
Simple_repeat |
| scaffold6111 |
17786 |
17818 |
+ |
(TAAA)n |
Simple_repeat |
| scaffold6111 |
17985 |
18006 |
+ |
(AAG)n |
Simple_repeat |
| scaffold6111 |
18057 |
18185 |
- |
RS1167 |
Unspecified |
| scaffold6111 |
18257 |
18413 |
- |
RS6502 |
Unspecified |
| scaffold6111 |
18412 |
18552 |
- |
RS6502 |
Unspecified |
| scaffold6111 |
18554 |
18769 |
- |
RS12788 |
Unspecified |
| scaffold6111 |
18769 |
18850 |
- |
RS972 |
Unspecified |
| scaffold6111 |
19142 |
19159 |
+ |
(AGT)n |
Simple_repeat |
| scaffold6111 |
19899 |
19952 |
+ |
(TTTTT)n |
Simple_repeat |
| scaffold6111 |
22929 |
23066 |
- |
RS11256 |
Unspecified |
| scaffold6111 |
25545 |
25607 |
+ |
RS7290 |
Unspecified |
| scaffold6111 |
25734 |
25757 |
+ |
(A)n |
Simple_repeat |
| scaffold6111 |
28712 |
28776 |
+ |
Copia-3_PTri-I |
LTR/Copia |
| scaffold6111 |
28846 |
28934 |
+ |
(CTGAA)n |
Simple_repeat |
| scaffold6111 |
28959 |
29018 |
+ |
(CTGAA)n |
Simple_repeat |
| scaffold6111 |
29374 |
29480 |
+ |
A-rich |
Low_complexity |
| scaffold6111 |
29699 |
29733 |
+ |
RS2386 |
Unspecified |
| scaffold6111 |
29737 |
29792 |
+ |
RS2331 |
Unspecified |
| scaffold6111 |
29922 |
29983 |
- |
SINE2-1_STu |
SINE/tRNA |
| scaffold6111 |
33385 |
33418 |
+ |
A-rich |
Low_complexity |
| scaffold6111 |
33666 |
33750 |
- |
SINE2-1a_SBi |
SINE/tRNA |
| scaffold6111 |
34007 |
34056 |
+ |
(TAT)n |
Simple_repeat |
| scaffold6111 |
35164 |
35327 |
+ |
hAT-N16_ZM |
DNA/hAT-Ac |
| scaffold6111 |
35199 |
35378 |
- |
hAT-13_VVi |
DNA/hAT-Ac |
| scaffold6111 |
35489 |
35653 |
- |
DS-RICE3N |
DNA/hAT-Ac |
| scaffold6111 |
40481 |
40504 |
+ |
(T)n |
Simple_repeat |
| scaffold6111 |
40547 |
40612 |
+ |
(TTTATAT)n |
Simple_repeat |
| scaffold6111 |
40943 |
40974 |
+ |
(ATA)n |
Simple_repeat |
| scaffold6111 |
41519 |
41556 |
+ |
(TGACCG)n |
Simple_repeat |
| scaffold6111 |
42450 |
42534 |
+ |
RS285 |
Unspecified |
| scaffold6111 |
42995 |
43042 |
+ |
(TTATTTT)n |
Simple_repeat |
| scaffold6111 |
45109 |
45140 |
+ |
A-rich |
Low_complexity |
| scaffold6111 |
45507 |
45543 |
+ |
(GTAATTAA)n |
Simple_repeat |
| scaffold6111 |
46089 |
46108 |
+ |
(A)n |
Simple_repeat |
| scaffold6111 |
47355 |
47372 |
+ |
(T)n |
Simple_repeat |
| scaffold6111 |
47600 |
47628 |
+ |
(A)n |
Simple_repeat |
| scaffold6111 |
53694 |
53721 |
+ |
(TC)n |
Simple_repeat |
| scaffold6111 |
54595 |
54690 |
+ |
(A)n |
Simple_repeat |
| scaffold6111 |
56030 |
56068 |
+ |
(ATTTA)n |
Simple_repeat |
| scaffold6111 |
56152 |
56207 |
+ |
(ATT)n |
Simple_repeat |
| scaffold6111 |
56494 |
56540 |
+ |
(ATA)n |
Simple_repeat |
| scaffold6111 |
57655 |
57743 |
- |
Copia-13_SB-I |
LTR/Copia |
| scaffold6111 |
59823 |
59855 |
+ |
GA-rich |
Low_complexity |
| scaffold6111 |
60823 |
60844 |
+ |
(CATT)n |
Simple_repeat |
| scaffold6111 |
61292 |
62302 |
- |
PL840 |
Unspecified |
| scaffold6111 |
62336 |
62374 |
+ |
(T)n |
Simple_repeat |
| scaffold6111 |
62950 |
63823 |
- |
RS799 |
Unspecified |
| scaffold6111 |
63825 |
64215 |
+ |
RS446 |
Unspecified |
| scaffold6111 |
63888 |
64942 |
- |
RS799 |
Unspecified |
| scaffold6111 |
65859 |
66121 |
+ |
(CTGAA)n |
Simple_repeat |
| scaffold6111 |
66172 |
66216 |
+ |
PL452 |
Unspecified |
| scaffold6111 |
67127 |
67414 |
+ |
(CTGAA)n |
Simple_repeat |
| scaffold6111 |
67468 |
67501 |
+ |
(T)n |
Simple_repeat |
| scaffold6111 |
67779 |
67812 |
+ |
(TT)n |
Simple_repeat |
| scaffold6111 |
67871 |
68078 |
+ |
RS5381 |
Unspecified |
| scaffold6111 |
68556 |
68587 |
+ |
(CCA)n |
Simple_repeat |
| scaffold6111 |
68871 |
68901 |
+ |
(T)n |
Simple_repeat |
| scaffold6111 |
68968 |
69073 |
+ |
RS2834 |
Unspecified |
| scaffold6111 |
69389 |
69422 |
+ |
(A)n |
Simple_repeat |
| scaffold6111 |
69451 |
69489 |
+ |
(ACC)n |
Simple_repeat |
| scaffold6111 |
72207 |
72244 |
+ |
(TATTC)n |
Simple_repeat |
| scaffold6111 |
73458 |
73504 |
+ |
A-rich |
Low_complexity |
| scaffold6111 |
74022 |
74103 |
+ |
A-rich |
Low_complexity |
| scaffold6111 |
74505 |
74555 |
+ |
A-rich |
Low_complexity |
| scaffold6111 |
75880 |
75923 |
+ |
(A)n |
Simple_repeat |
| scaffold6111 |
79039 |
79179 |
+ |
(CAACAAT)n |
Simple_repeat |
| scaffold6111 |
79550 |
79590 |
+ |
A-rich |
Low_complexity |
| scaffold6111 |
79591 |
79612 |
+ |
(A)n |
Simple_repeat |
| scaffold6111 |
79839 |
80068 |
- |
RS18 |
Unspecified |
| scaffold6111 |
80139 |
80388 |
- |
LINE1-54_SBi |
LINE/L1 |
| scaffold6111 |
80669 |
80724 |
+ |
(GTTTCGTGAA)n |
Simple_repeat |
| scaffold6111 |
80891 |
80921 |
+ |
GA-rich |
Low_complexity |
| scaffold6111 |
81437 |
81498 |
+ |
(GTGTT)n |
Simple_repeat |
| scaffold6111 |
81939 |
81965 |
+ |
Gypsy-16_Mad-I |
LTR/Gypsy |
| scaffold6111 |
82380 |
82749 |
+ |
MEGY-I_MT |
LTR/Gypsy |
| scaffold6111 |
83228 |
83275 |
+ |
(CAA)n |
Simple_repeat |
| scaffold6111 |
83411 |
83915 |
- |
RS1549 |
Unspecified |
| scaffold6111 |
83956 |
83991 |
+ |
(GGCCGTG)n |
Simple_repeat |
| scaffold6111 |
84119 |
84675 |
+ |
MEGY-I_MT |
LTR/Gypsy |
| scaffold6111 |
84955 |
84992 |
+ |
(TGA)n |
Simple_repeat |
| scaffold6111 |
85249 |
85287 |
+ |
(TTTTCAT)n |
Simple_repeat |
| scaffold6111 |
86012 |
86079 |
+ |
GA-rich |
Low_complexity |
| scaffold6111 |
86099 |
88179 |
+ |
RS1686 |
Unspecified |
| scaffold6111 |
88934 |
89156 |
+ |
PIGY-I_PS |
LTR/Gypsy |
| scaffold6111 |
89610 |
90104 |
- |
RS1930 |
Unspecified |
| scaffold6111 |
90161 |
90897 |
+ |
PIGY-I_PS |
LTR/Gypsy |
| scaffold6111 |
91074 |
91113 |
+ |
(GAT)n |
Simple_repeat |
| scaffold6111 |
91552 |
91597 |
+ |
(GCTTT)n |
Simple_repeat |
| scaffold6111 |
92331 |
92395 |
+ |
A-rich |
Low_complexity |
| scaffold6111 |
92417 |
92435 |
+ |
(GTT)n |
Simple_repeat |
| scaffold6111 |
93004 |
93063 |
+ |
ATHILA6C_I-int |
LTR/Gypsy |
| scaffold6111 |
94843 |
94928 |
+ |
Copia26-VV_I-int |
LTR/Copia |
| scaffold6111 |
94856 |
94943 |
+ |
ATGP11_LTR |
LTR/Gypsy |
| scaffold6111 |
95237 |
95468 |
+ |
Copia-85_ST-I |
LTR/Copia |
| scaffold6111 |
95673 |
95746 |
+ |
(TATTTTT)n |
Simple_repeat |
| scaffold6111 |
95959 |
96043 |
+ |
HADES_TA |
DNA/TcMar-Stowaway |
| scaffold6111 |
96284 |
96322 |
+ |
(T)n |
Simple_repeat |
| scaffold6111 |
96483 |
96541 |
+ |
RS30 |
Unspecified |
| scaffold6111 |
100261 |
100840 |
+ |
PL730 |
Unspecified |
| scaffold6111 |
101183 |
101244 |
- |
RS1450 |
Unspecified |
| scaffold6111 |
101841 |
101867 |
+ |
(AAAT)n |
Simple_repeat |
| scaffold6111 |
103607 |
103642 |
+ |
(CTT)n |
Simple_repeat |
| scaffold6111 |
104467 |
105237 |
+ |
RS3423 |
Unspecified |
| scaffold6111 |
105300 |
106491 |
+ |
RS12 |
Unspecified |
| scaffold6111 |
106662 |
106681 |
+ |
(T)n |
Simple_repeat |
| scaffold6111 |
107016 |
107057 |
+ |
(AAAT)n |
Simple_repeat |
| scaffold6111 |
107112 |
107141 |
+ |
(T)n |
Simple_repeat |
| scaffold6111 |
109276 |
109877 |
+ |
PL522 |
Unspecified |
| scaffold6111 |
110274 |
110330 |
+ |
(TTTAA)n |
Simple_repeat |