scaffold626 Repeat List
| genome |
start |
end |
strand |
repeat-name |
repeat-class |
| scaffold626 |
1 |
124 |
+ |
PL642 |
Unspecified |
| scaffold626 |
403 |
571 |
+ |
RS2202 |
Unspecified |
| scaffold626 |
1003 |
1170 |
- |
RS2074 |
Unspecified |
| scaffold626 |
4318 |
4877 |
+ |
PL347 |
Unspecified |
| scaffold626 |
5119 |
5279 |
- |
RS13210 |
Unspecified |
| scaffold626 |
5835 |
6021 |
- |
RS38 |
Unspecified |
| scaffold626 |
6132 |
6171 |
+ |
RS2863 |
Unspecified |
| scaffold626 |
6649 |
6686 |
+ |
(A)n |
Simple_repeat |
| scaffold626 |
7369 |
7408 |
+ |
A-rich |
Low_complexity |
| scaffold626 |
7630 |
7994 |
- |
RS15895 |
Unspecified |
| scaffold626 |
7997 |
8467 |
+ |
LINE |
LINE(TransposonPSI) |
| scaffold626 |
9448 |
9565 |
- |
RS15895 |
Unspecified |
| scaffold626 |
9466 |
9586 |
+ |
RS2863 |
Unspecified |
| scaffold626 |
9605 |
9817 |
- |
RS17326 |
Unspecified |
| scaffold626 |
10738 |
10874 |
+ |
GA-rich |
Low_complexity |
| scaffold626 |
10998 |
11136 |
+ |
GA-rich |
Low_complexity |
| scaffold626 |
12153 |
13538 |
- |
RS1149 |
Unspecified |
| scaffold626 |
13380 |
13557 |
- |
RS3844 |
Unspecified |
| scaffold626 |
14729 |
14764 |
+ |
(TATTTG)n |
Simple_repeat |
| scaffold626 |
16145 |
16172 |
+ |
(T)n |
Simple_repeat |
| scaffold626 |
16630 |
16700 |
+ |
(TAT)n |
Simple_repeat |
| scaffold626 |
17288 |
17322 |
+ |
(ATTA)n |
Simple_repeat |
| scaffold626 |
18011 |
18056 |
+ |
(TCAAT)n |
Simple_repeat |
| scaffold626 |
18401 |
19257 |
+ |
Copia-97_STu-I |
LTR/Copia |
| scaffold626 |
19594 |
19790 |
+ |
Copia-97_STu-I |
LTR/Copia |
| scaffold626 |
19762 |
19846 |
+ |
Copia-97_STu-I |
LTR/Copia |
| scaffold626 |
19849 |
20999 |
+ |
Copia-97_STu-I |
LTR/Copia |
| scaffold626 |
21167 |
22710 |
+ |
Copia-48_ST-I |
LTR/Copia |
| scaffold626 |
22809 |
22854 |
+ |
(TCAAT)n |
Simple_repeat |
| scaffold626 |
23936 |
23997 |
+ |
(T)n |
Simple_repeat |
| scaffold626 |
24090 |
24132 |
+ |
(T)n |
Simple_repeat |
| scaffold626 |
25239 |
25426 |
+ |
RS5318 |
Unspecified |
| scaffold626 |
25676 |
25737 |
+ |
(GATTA)n |
Simple_repeat |
| scaffold626 |
25752 |
26297 |
+ |
LINE |
LINE(TransposonPSI) |
| scaffold626 |
26876 |
27042 |
- |
RS7681 |
Unspecified |
| scaffold626 |
27440 |
27472 |
+ |
(TTAATT)n |
Simple_repeat |
| scaffold626 |
27883 |
27935 |
+ |
(ATTTTG)n |
Simple_repeat |
| scaffold626 |
28171 |
28181 |
+ |
(ATAC)n |
Simple_repeat |
| scaffold626 |
28182 |
28248 |
+ |
(TACAT)n |
Simple_repeat |
| scaffold626 |
28238 |
28282 |
+ |
(ACACAA)n |
Simple_repeat |
| scaffold626 |
28249 |
28276 |
+ |
(ATAC)n |
Simple_repeat |
| scaffold626 |
28573 |
29238 |
- |
PL919 |
Unspecified |
| scaffold626 |
29646 |
29720 |
+ |
A-rich |
Low_complexity |
| scaffold626 |
29744 |
30255 |
+ |
PL487 |
Unspecified |
| scaffold626 |
29744 |
30362 |
- |
PL229 |
Unspecified |
| scaffold626 |
31616 |
31797 |
- |
RS14780 |
Unspecified |
| scaffold626 |
31794 |
31996 |
- |
RS10213 |
Unspecified |
| scaffold626 |
32096 |
32787 |
- |
RS1892 |
Unspecified |
| scaffold626 |
32810 |
32835 |
+ |
(A)n |
Simple_repeat |
| scaffold626 |
32871 |
32899 |
+ |
(A)n |
Simple_repeat |
| scaffold626 |
33006 |
33050 |
+ |
(TTA)n |
Simple_repeat |
| scaffold626 |
33160 |
33189 |
+ |
(TTAAA)n |
Simple_repeat |
| scaffold626 |
33197 |
33451 |
- |
RS2064 |
Unspecified |
| scaffold626 |
33452 |
34152 |
- |
RS385 |
Unspecified |
| scaffold626 |
35708 |
35741 |
+ |
(TTTTA)n |
Simple_repeat |
| scaffold626 |
36236 |
36298 |
+ |
(TTAAT)n |
Simple_repeat |
| scaffold626 |
36882 |
37139 |
+ |
RS237 |
Unspecified |
| scaffold626 |
37759 |
37794 |
+ |
(AATATA)n |
Simple_repeat |
| scaffold626 |
37992 |
38048 |
+ |
A-rich |
Low_complexity |
| scaffold626 |
38171 |
38231 |
+ |
(AATATGT)n |
Simple_repeat |
| scaffold626 |
38674 |
38722 |
+ |
A-rich |
Low_complexity |
| scaffold626 |
38674 |
39113 |
+ |
A-rich |
Low_complexity |
| scaffold626 |
38701 |
40850 |
- |
Copia-88_VV-I |
LTR/Copia |
| scaffold626 |
38985 |
40850 |
- |
Copia-88_VV-I |
LTR/Copia |
| scaffold626 |
40886 |
41610 |
- |
Copia-88_VV-I |
LTR/Copia |
| scaffold626 |
41623 |
41813 |
- |
Copia26-VV_I-int |
LTR/Copia |
| scaffold626 |
42025 |
42052 |
+ |
A-rich |
Low_complexity |
| scaffold626 |
42192 |
42308 |
- |
Copia26-VV_I-int |
LTR/Copia |
| scaffold626 |
42390 |
43064 |
- |
Copia26-VV_I-int |
LTR/Copia |
| scaffold626 |
43074 |
43100 |
+ |
(AAAAT)n |
Simple_repeat |
| scaffold626 |
43463 |
43483 |
+ |
(A)n |
Simple_repeat |
| scaffold626 |
43661 |
44707 |
+ |
PL326 |
Unspecified |
| scaffold626 |
45934 |
46195 |
+ |
RS1 |
Unspecified |
| scaffold626 |
46423 |
46480 |
+ |
(TTTTTG)n |
Simple_repeat |
| scaffold626 |
47211 |
47260 |
+ |
(ATAATAA)n |
Simple_repeat |
| scaffold626 |
47406 |
48921 |
- |
Copia-16_ST-I |
LTR/Copia |
| scaffold626 |
49071 |
51357 |
- |
Copia-16_ST-I |
LTR/Copia |
| scaffold626 |
51379 |
51442 |
+ |
(TTTG)n |
Simple_repeat |
| scaffold626 |
52770 |
53076 |
- |
Copia-82_GM-I |
LTR/Copia |
| scaffold626 |
53509 |
53661 |
- |
TY1_Copia |
TY1_Copia(TransposonPSI) |
| scaffold626 |
53539 |
53652 |
- |
Copia-82_GM-I |
LTR/Copia |
| scaffold626 |
54131 |
54147 |
+ |
(ACC)n |
Simple_repeat |
| scaffold626 |
54308 |
54362 |
+ |
(GTGGTG)n |
Simple_repeat |
| scaffold626 |
54853 |
54944 |
- |
LTR-7_Mad-LTR |
LTR |
| scaffold626 |
56058 |
56167 |
- |
RS1649 |
Unspecified |
| scaffold626 |
56787 |
57004 |
- |
RS1649 |
Unspecified |
| scaffold626 |
57929 |
57980 |
+ |
(AGCTGAA)n |
Simple_repeat |
| scaffold626 |
58280 |
58642 |
+ |
RS539 |
Unspecified |
| scaffold626 |
58654 |
58684 |
+ |
(T)n |
Simple_repeat |
| scaffold626 |
58800 |
58940 |
+ |
RS1329 |
Unspecified |
| scaffold626 |
59038 |
59066 |
+ |
(T)n |
Simple_repeat |
| scaffold626 |
60116 |
60496 |
+ |
RS2341 |
Unspecified |
| scaffold626 |
60587 |
60633 |
+ |
(ACCCGAA)n |
Simple_repeat |
| scaffold626 |
60867 |
61014 |
+ |
(CCCGA)n |
Simple_repeat |
| scaffold626 |
61313 |
61367 |
+ |
(ACACTAC)n |
Simple_repeat |
| scaffold626 |
61451 |
61805 |
+ |
HELMET4 |
RC/Helitron |
| scaffold626 |
62884 |
62945 |
+ |
A-rich |
Low_complexity |
| scaffold626 |
63115 |
63180 |
- |
RS1323 |
Unspecified |
| scaffold626 |
63250 |
63426 |
- |
PL363 |
Unspecified |
| scaffold626 |
63774 |
63836 |
+ |
A-rich |
Low_complexity |
| scaffold626 |
64098 |
64122 |
+ |
(A)n |
Simple_repeat |
| scaffold626 |
64601 |
64624 |
+ |
(A)n |
Simple_repeat |
| scaffold626 |
64852 |
64876 |
+ |
(A)n |
Simple_repeat |
| scaffold626 |
64948 |
65120 |
+ |
RS5672 |
Unspecified |
| scaffold626 |
65058 |
65328 |
+ |
RS3022 |
Unspecified |
| scaffold626 |
65360 |
65423 |
+ |
(TTTG)n |
Simple_repeat |
| scaffold626 |
65470 |
65712 |
- |
RS114 |
Unspecified |
| scaffold626 |
67094 |
67136 |
+ |
(ATACG)n |
Simple_repeat |
| scaffold626 |
68420 |
68439 |
+ |
(A)n |
Simple_repeat |
| scaffold626 |
70035 |
70077 |
+ |
DNA9-4_Mad |
DNA |
| scaffold626 |
70292 |
71285 |
+ |
Copia-53_VV-I |
LTR/Copia |
| scaffold626 |
71571 |
71682 |
- |
TRAMET1 |
DNA/TcMar-Stowaway |
| scaffold626 |
72047 |
72132 |
+ |
(ATAA)n |
Simple_repeat |
| scaffold626 |
73048 |
73074 |
+ |
(AT)n |
Simple_repeat |
| scaffold626 |
73098 |
73454 |
- |
RS326 |
Unspecified |
| scaffold626 |
74455 |
74828 |
- |
RS326 |
Unspecified |
| scaffold626 |
75976 |
76002 |
+ |
(TG)n |
Simple_repeat |
| scaffold626 |
76126 |
76214 |
+ |
(GTAT)n |
Simple_repeat |
| scaffold626 |
76325 |
76546 |
+ |
RS713 |
Unspecified |
| scaffold626 |
76623 |
76850 |
+ |
RS549 |
Unspecified |
| scaffold626 |
77152 |
77412 |
+ |
RS365 |
Unspecified |
| scaffold626 |
78489 |
78590 |
+ |
(TTA)n |
Simple_repeat |
| scaffold626 |
79761 |
80237 |
- |
PL329 |
Unspecified |
| scaffold626 |
81136 |
81882 |
+ |
RS60 |
Unspecified |
| scaffold626 |
83602 |
83959 |
+ |
RS792 |
Unspecified |
| scaffold626 |
84116 |
84479 |
- |
RS8 |
Unspecified |
| scaffold626 |
85258 |
85432 |
- |
RS7654 |
Unspecified |
| scaffold626 |
85524 |
85551 |
+ |
(T)n |
Simple_repeat |
| scaffold626 |
86421 |
86457 |
+ |
(TAT)n |
Simple_repeat |
| scaffold626 |
89488 |
89586 |
- |
RS16382 |
Unspecified |
| scaffold626 |
92174 |
92214 |
+ |
(ATTT)n |
Simple_repeat |
| scaffold626 |
92264 |
92302 |
+ |
(TAATA)n |
Simple_repeat |
| scaffold626 |
92805 |
92835 |
+ |
(TTAT)n |
Simple_repeat |
| scaffold626 |
93918 |
94025 |
+ |
RS13929 |
Unspecified |
| scaffold626 |
94869 |
95000 |
+ |
RS376 |
Unspecified |
| scaffold626 |
97764 |
97789 |
+ |
(T)n |
Simple_repeat |
| scaffold626 |
98442 |
98577 |
+ |
(TTCAGAAAAC)n |
Simple_repeat |
| scaffold626 |
98599 |
98745 |
+ |
EnSpm-34_SBi |
DNA/CMC-EnSpm |
| scaffold626 |
98844 |
98867 |
+ |
(TTA)n |
Simple_repeat |
| scaffold626 |
98954 |
99010 |
+ |
(AAT)n |
Simple_repeat |
| scaffold626 |
99011 |
99077 |
- |
EnSpm-34_SBi |
DNA/CMC-EnSpm |
| scaffold626 |
99078 |
99209 |
+ |
(TTCAGAAAAC)n |
Simple_repeat |
| scaffold626 |
101061 |
101156 |
- |
RS16382 |
Unspecified |
| scaffold626 |
101397 |
101554 |
+ |
(CCCGA)n |
Simple_repeat |
| scaffold626 |
101658 |
101705 |
+ |
A-rich |
Low_complexity |
| scaffold626 |
101714 |
101870 |
+ |
(CCCGA)n |
Simple_repeat |
| scaffold626 |
102543 |
102586 |
+ |
(CAA)n |
Simple_repeat |
| scaffold626 |
102741 |
103118 |
- |
RS1032 |
Unspecified |
| scaffold626 |
103205 |
103223 |
+ |
(A)n |
Simple_repeat |
| scaffold626 |
103205 |
103400 |
+ |
(A)n |
Simple_repeat |
| scaffold626 |
103221 |
103400 |
- |
RS2629 |
Unspecified |
| scaffold626 |
103428 |
103569 |
+ |
(AACACT)n |
Simple_repeat |
| scaffold626 |
103584 |
103633 |
+ |
A-rich |
Low_complexity |
| scaffold626 |
103976 |
104049 |
- |
EnSpm2_PTr |
DNA/CMC-EnSpm |
| scaffold626 |
104241 |
104269 |
+ |
(T)n |
Simple_repeat |
| scaffold626 |
104241 |
104555 |
+ |
(T)n |
Simple_repeat |
| scaffold626 |
104255 |
104555 |
- |
RS2213 |
Unspecified |
| scaffold626 |
104557 |
105233 |
- |
Copia-85_ST-I |
LTR/Copia |
| scaffold626 |
105223 |
106687 |
- |
Copia-85_ST-I |
LTR/Copia |
| scaffold626 |
106885 |
106919 |
+ |
(TTTCAA)n |
Simple_repeat |
| scaffold626 |
107078 |
107117 |
+ |
(TTTTAAC)n |
Simple_repeat |
| scaffold626 |
107135 |
107182 |
+ |
(TATT)n |
Simple_repeat |
| scaffold626 |
107677 |
108029 |
- |
RS4010 |
Unspecified |
| scaffold626 |
107776 |
108200 |
+ |
RS6231 |
Unspecified |
| scaffold626 |
108185 |
108254 |
+ |
RS6231 |
Unspecified |
| scaffold626 |
108340 |
108472 |
+ |
PL789 |
Unspecified |
| scaffold626 |
108749 |
108892 |
- |
RS4 |
Unspecified |
| scaffold626 |
109042 |
109124 |
+ |
(TAA)n |
Simple_repeat |
| scaffold626 |
109147 |
109183 |
+ |
GA-rich |
Low_complexity |
| scaffold626 |
109646 |
109674 |
+ |
(TTCAG)n |
Simple_repeat |
| scaffold626 |
113696 |
113737 |
+ |
(CTCT)n |
Simple_repeat |
| scaffold626 |
113866 |
113959 |
+ |
(CGA)n |
Simple_repeat |
| scaffold626 |
114488 |
114568 |
+ |
GA-rich |
Low_complexity |
| scaffold626 |
114803 |
114827 |
+ |
(GAAT)n |
Simple_repeat |
| scaffold626 |
117474 |
117533 |
+ |
(GATGGAT)n |
Simple_repeat |
| scaffold626 |
120245 |
120317 |
+ |
A-rich |
Low_complexity |
| scaffold626 |
122841 |
123033 |
- |
PL158 |
Unspecified |
| scaffold626 |
124855 |
124904 |
+ |
(GTAGTGA)n |
Simple_repeat |
| scaffold626 |
125252 |
125298 |
+ |
A-rich |
Low_complexity |
| scaffold626 |
125420 |
125632 |
- |
PL504 |
Unspecified |
| scaffold626 |
126510 |
126795 |
- |
RS1095 |
Unspecified |
| scaffold626 |
128625 |
128749 |
+ |
(TTCAGAAAAC)n |
Simple_repeat |
| scaffold626 |
128756 |
128863 |
+ |
(AAT)n |
Simple_repeat |
| scaffold626 |
129238 |
129335 |
+ |
(TTA)n |
Simple_repeat |
| scaffold626 |
129358 |
129470 |
+ |
(AGAAAACTTC)n |
Simple_repeat |
| scaffold626 |
129500 |
130006 |
+ |
PL557 |
Unspecified |
| scaffold626 |
131120 |
131449 |
+ |
RS210 |
Unspecified |
| scaffold626 |
131818 |
131851 |
+ |
(ACGTGC)n |
Simple_repeat |
| scaffold626 |
132336 |
132365 |
+ |
(T)n |
Simple_repeat |
| scaffold626 |
132454 |
132696 |
- |
RS4 |
Unspecified |
| scaffold626 |
132697 |
132719 |
+ |
(T)n |
Simple_repeat |
| scaffold626 |
132811 |
133050 |
+ |
PL473 |
Unspecified |
| scaffold626 |
132820 |
133119 |
- |
PL301 |
Unspecified |
| scaffold626 |
133099 |
133489 |
+ |
RS8 |
Unspecified |
| scaffold626 |
133482 |
133622 |
- |
RS364 |
Unspecified |
| scaffold626 |
133810 |
134286 |
- |
RS364 |
Unspecified |
| scaffold626 |
134074 |
134311 |
- |
PL503 |
Unspecified |
| scaffold626 |
134360 |
134401 |
- |
PL110 |
Unspecified |
| scaffold626 |
134540 |
134570 |
+ |
(A)n |
Simple_repeat |
| scaffold626 |
134583 |
134620 |
+ |
A-rich |
Low_complexity |
| scaffold626 |
134843 |
134876 |
+ |
(ATTTT)n |
Simple_repeat |
| scaffold626 |
134998 |
135047 |
+ |
A-rich |
Low_complexity |
| scaffold626 |
135234 |
135678 |
+ |
PL413 |
Unspecified |
| scaffold626 |
136712 |
136749 |
+ |
(TATAAC)n |
Simple_repeat |
| scaffold626 |
136998 |
137068 |
+ |
A-rich |
Low_complexity |
| scaffold626 |
138078 |
138127 |
+ |
(AT)n |
Simple_repeat |
| scaffold626 |
139894 |
140122 |
- |
RS18 |
Unspecified |
| scaffold626 |
141148 |
141650 |
+ |
COP3_I_MT-int |
LTR/Copia |
| scaffold626 |
141908 |
143382 |
+ |
COP3_I_MT-int |
LTR/Copia |
| scaffold626 |
143697 |
143756 |
+ |
A-rich |
Low_complexity |
| scaffold626 |
143767 |
144459 |
+ |
RS248 |
Unspecified |
| scaffold626 |
145633 |
145670 |
+ |
(A)n |
Simple_repeat |
| scaffold626 |
145672 |
145913 |
+ |
RS211 |
Unspecified |
| scaffold626 |
146338 |
146606 |
+ |
LTR-1_SBi-LTR |
LTR |
| scaffold626 |
146758 |
147147 |
+ |
RS1911 |
Unspecified |
| scaffold626 |
148257 |
149659 |
+ |
RS695 |
Unspecified |
| scaffold626 |
149984 |
150200 |
+ |
RS6897 |
Unspecified |
| scaffold626 |
152140 |
152189 |
+ |
(TTTTAG)n |
Simple_repeat |
| scaffold626 |
153012 |
154110 |
- |
Gypsy-53_GM-I |
LTR/Gypsy |
| scaffold626 |
153012 |
154525 |
- |
Gypsy-53_GM-I |
LTR/Gypsy |
| scaffold626 |
153908 |
154525 |
- |
RS5888 |
Unspecified |
| scaffold626 |
154651 |
154755 |
- |
GYPSY3-I_MT |
LTR/Gypsy |
| scaffold626 |
155558 |
155613 |
- |
Gypsy-21_ST-I |
LTR/Gypsy |
| scaffold626 |
156395 |
157610 |
- |
PL933 |
Unspecified |
| scaffold626 |
158908 |
158950 |
+ |
(TTTCGGTT)n |
Simple_repeat |
| scaffold626 |
160930 |
160970 |
+ |
(GTTT)n |
Simple_repeat |
| scaffold626 |
161532 |
161862 |
+ |
RS1200 |
Unspecified |