scaffold6298 Repeat List
| genome |
start |
end |
strand |
repeat-name |
repeat-class |
| scaffold6298 |
1 |
1351 |
- |
Copia-38_ST-I |
LTR/Copia |
| scaffold6298 |
1924 |
2792 |
- |
Copia-105_GM-I |
LTR/Copia |
| scaffold6298 |
2921 |
3313 |
- |
Copia-38_ST-I |
LTR/Copia |
| scaffold6298 |
3394 |
4067 |
+ |
RS4002 |
Unspecified |
| scaffold6298 |
4505 |
5164 |
- |
ltr_Roo |
ltr_Roo(TransposonPSI) |
| scaffold6298 |
4947 |
5159 |
- |
TORTL1 |
LTR/Copia |
| scaffold6298 |
6393 |
6602 |
+ |
RS2174 |
Unspecified |
| scaffold6298 |
6634 |
6760 |
+ |
RS4261 |
Unspecified |
| scaffold6298 |
10245 |
10573 |
+ |
RS2419 |
Unspecified |
| scaffold6298 |
11935 |
12064 |
+ |
RS10385 |
Unspecified |
| scaffold6298 |
12525 |
12865 |
+ |
RS4539 |
Unspecified |
| scaffold6298 |
13455 |
13488 |
+ |
A-rich |
Low_complexity |
| scaffold6298 |
13698 |
13929 |
+ |
RS15131 |
Unspecified |
| scaffold6298 |
14365 |
14449 |
+ |
PL8 |
Unspecified |
| scaffold6298 |
14720 |
14780 |
+ |
A-rich |
Low_complexity |
| scaffold6298 |
15179 |
15298 |
- |
RS4588 |
Unspecified |
| scaffold6298 |
16092 |
16135 |
+ |
A-rich |
Low_complexity |
| scaffold6298 |
16797 |
17306 |
- |
PL268 |
Unspecified |
| scaffold6298 |
17082 |
17140 |
+ |
A-rich |
Low_complexity |
| scaffold6298 |
17333 |
17560 |
+ |
RS4539 |
Unspecified |
| scaffold6298 |
17889 |
18005 |
- |
RS1042 |
Unspecified |
| scaffold6298 |
17988 |
18072 |
- |
RS1042 |
Unspecified |
| scaffold6298 |
18325 |
18358 |
+ |
(TTTT)n |
Simple_repeat |
| scaffold6298 |
19169 |
19194 |
+ |
(A)n |
Simple_repeat |
| scaffold6298 |
19461 |
19682 |
+ |
RS897 |
Unspecified |
| scaffold6298 |
19915 |
19948 |
+ |
A-rich |
Low_complexity |
| scaffold6298 |
20104 |
20133 |
+ |
(A)n |
Simple_repeat |
| scaffold6298 |
20775 |
20994 |
- |
PL592 |
Unspecified |
| scaffold6298 |
20993 |
21237 |
+ |
PL130 |
Unspecified |
| scaffold6298 |
21239 |
21358 |
- |
RS9473 |
Unspecified |
| scaffold6298 |
21402 |
21542 |
- |
RS11972 |
Unspecified |
| scaffold6298 |
21639 |
21737 |
+ |
(TTCAG)n |
Simple_repeat |
| scaffold6298 |
21770 |
21798 |
+ |
(TAT)n |
Simple_repeat |
| scaffold6298 |
22015 |
22096 |
+ |
(CTTCT)n |
Simple_repeat |
| scaffold6298 |
22804 |
22938 |
- |
RS8776 |
Unspecified |
| scaffold6298 |
23645 |
23751 |
+ |
RS12629 |
Unspecified |
| scaffold6298 |
23901 |
23955 |
- |
RS4261 |
Unspecified |
| scaffold6298 |
24027 |
24082 |
- |
RS4261 |
Unspecified |
| scaffold6298 |
24089 |
24321 |
+ |
RS3180 |
Unspecified |
| scaffold6298 |
24320 |
24519 |
+ |
RS3180 |
Unspecified |
| scaffold6298 |
24516 |
24550 |
+ |
RS3180 |
Unspecified |
| scaffold6298 |
24880 |
26164 |
+ |
RS51 |
Unspecified |
| scaffold6298 |
26376 |
26414 |
+ |
(TTTATT)n |
Simple_repeat |
| scaffold6298 |
27306 |
27563 |
- |
LTR2-ZM_LTR |
LTR |
| scaffold6298 |
27648 |
27747 |
+ |
RS418 |
Unspecified |
| scaffold6298 |
27889 |
27926 |
+ |
A-rich |
Low_complexity |
| scaffold6298 |
28375 |
28486 |
+ |
RS1 |
Unspecified |
| scaffold6298 |
29171 |
29231 |
+ |
(AT)n |
Simple_repeat |
| scaffold6298 |
30723 |
31426 |
+ |
RS13658 |
Unspecified |
| scaffold6298 |
30728 |
31312 |
+ |
RS548 |
Unspecified |
| scaffold6298 |
31573 |
32141 |
- |
RS2571 |
Unspecified |
| scaffold6298 |
32055 |
32231 |
+ |
RS131 |
Unspecified |
| scaffold6298 |
33388 |
33439 |
+ |
(ACA)n |
Simple_repeat |
| scaffold6298 |
34360 |
34628 |
+ |
RS96 |
Unspecified |
| scaffold6298 |
35399 |
35449 |
+ |
(TTA)n |
Simple_repeat |
| scaffold6298 |
35533 |
35583 |
+ |
(TA)n |
Simple_repeat |
| scaffold6298 |
37140 |
37184 |
+ |
(AT)n |
Simple_repeat |
| scaffold6298 |
37394 |
37644 |
+ |
(CAC)n |
Simple_repeat |
| scaffold6298 |
37772 |
37817 |
+ |
(TT)n |
Simple_repeat |
| scaffold6298 |
37892 |
38021 |
- |
RS2988 |
Unspecified |
| scaffold6298 |
38033 |
38090 |
+ |
A-rich |
Low_complexity |
| scaffold6298 |
38205 |
38308 |
+ |
RS12479 |
Unspecified |
| scaffold6298 |
38773 |
38889 |
+ |
(ACC)n |
Simple_repeat |
| scaffold6298 |
39014 |
39222 |
- |
RS5165 |
Unspecified |
| scaffold6298 |
39302 |
39355 |
+ |
(GA)n |
Simple_repeat |
| scaffold6298 |
39510 |
39563 |
+ |
(TA)n |
Simple_repeat |
| scaffold6298 |
39861 |
40022 |
+ |
RS1010 |
Unspecified |
| scaffold6298 |
40022 |
40444 |
+ |
A-rich |
Low_complexity |
| scaffold6298 |
40395 |
40444 |
+ |
A-rich |
Low_complexity |
| scaffold6298 |
40835 |
40971 |
+ |
RS1208 |
Unspecified |
| scaffold6298 |
41371 |
41410 |
+ |
(ATACAATTT)n |
Simple_repeat |
| scaffold6298 |
44243 |
44409 |
+ |
PL255 |
Unspecified |
| scaffold6298 |
44407 |
45256 |
+ |
RS1208 |
Unspecified |
| scaffold6298 |
44993 |
45290 |
+ |
RS1114 |
Unspecified |
| scaffold6298 |
45652 |
45683 |
+ |
(AAAC)n |
Simple_repeat |
| scaffold6298 |
46166 |
46183 |
+ |
(C)n |
Simple_repeat |
| scaffold6298 |
46407 |
46441 |
+ |
(T)n |
Simple_repeat |
| scaffold6298 |
46812 |
46849 |
+ |
(A)n |
Simple_repeat |
| scaffold6298 |
46947 |
46990 |
+ |
(TTCTCT)n |
Simple_repeat |
| scaffold6298 |
47415 |
47456 |
+ |
(TA)n |
Simple_repeat |
| scaffold6298 |
47495 |
48039 |
- |
Gypsy-54_GM-I |
LTR/Gypsy |
| scaffold6298 |
48623 |
48649 |
+ |
(A)n |
Simple_repeat |
| scaffold6298 |
48857 |
48896 |
+ |
(TATTTT)n |
Simple_repeat |
| scaffold6298 |
50951 |
50973 |
+ |
(A)n |
Simple_repeat |
| scaffold6298 |
51362 |
51585 |
- |
PL582 |
Unspecified |
| scaffold6298 |
52080 |
52274 |
- |
RS152 |
Unspecified |
| scaffold6298 |
52893 |
52944 |
+ |
A-rich |
Low_complexity |
| scaffold6298 |
53669 |
53715 |
+ |
(TTAATT)n |
Simple_repeat |
| scaffold6298 |
53881 |
54061 |
- |
RS1340 |
Unspecified |
| scaffold6298 |
55164 |
55204 |
+ |
(ATTT)n |
Simple_repeat |
| scaffold6298 |
56297 |
56346 |
+ |
A-rich |
Low_complexity |
| scaffold6298 |
56548 |
56580 |
+ |
(TTTCA)n |
Simple_repeat |
| scaffold6298 |
57574 |
57602 |
+ |
(GTGGGC)n |
Simple_repeat |
| scaffold6298 |
58079 |
58110 |
+ |
A-rich |
Low_complexity |
| scaffold6298 |
58131 |
58172 |
+ |
(ACC)n |
Simple_repeat |
| scaffold6298 |
58522 |
58566 |
+ |
(AATTGAAT)n |
Simple_repeat |
| scaffold6298 |
58954 |
58991 |
+ |
(A)n |
Simple_repeat |
| scaffold6298 |
59058 |
59091 |
+ |
(A)n |
Simple_repeat |
| scaffold6298 |
59274 |
59300 |
+ |
(TTTA)n |
Simple_repeat |
| scaffold6298 |
59339 |
59640 |
- |
PL624 |
Unspecified |
| scaffold6298 |
59415 |
59641 |
+ |
PL477 |
Unspecified |
| scaffold6298 |
59820 |
59843 |
+ |
(A)n |
Simple_repeat |
| scaffold6298 |
60601 |
60628 |
+ |
(AAAC)n |
Simple_repeat |
| scaffold6298 |
62183 |
62212 |
+ |
(TATAT)n |
Simple_repeat |
| scaffold6298 |
62253 |
62302 |
+ |
(TTCAG)n |
Simple_repeat |
| scaffold6298 |
62540 |
62598 |
+ |
(TAT)n |
Simple_repeat |
| scaffold6298 |
64045 |
64929 |
- |
LINE |
LINE(TransposonPSI) |
| scaffold6298 |
66144 |
66190 |
+ |
(TAT)n |
Simple_repeat |
| scaffold6298 |
66269 |
66380 |
+ |
(ATGAAG)n |
Simple_repeat |
| scaffold6298 |
66473 |
66536 |
+ |
(ATT)n |
Simple_repeat |
| scaffold6298 |
67643 |
68124 |
- |
PL63 |
Unspecified |
| scaffold6298 |
68194 |
68216 |
+ |
(CAA)n |
Simple_repeat |
| scaffold6298 |
69005 |
69057 |
+ |
(GTTCTG)n |
Simple_repeat |
| scaffold6298 |
69067 |
69200 |
+ |
RIRE8A_I-int |
LTR/Gypsy |
| scaffold6298 |
69352 |
71026 |
+ |
GYCUME1_I-int |
LTR/Gypsy |
| scaffold6298 |
71094 |
71993 |
+ |
Gypsy-5_CP-I |
LTR/Gypsy |
| scaffold6298 |
72005 |
72412 |
+ |
PL822 |
Unspecified |
| scaffold6298 |
75249 |
75811 |
+ |
RS947 |
Unspecified |
| scaffold6298 |
76862 |
76912 |
+ |
(TTGTG)n |
Simple_repeat |
| scaffold6298 |
77334 |
77386 |
+ |
(TTTTA)n |
Simple_repeat |
| scaffold6298 |
77664 |
77690 |
+ |
(T)n |
Simple_repeat |
| scaffold6298 |
78046 |
78181 |
+ |
RS10732 |
Unspecified |
| scaffold6298 |
78220 |
78434 |
+ |
RS10732 |
Unspecified |
| scaffold6298 |
78613 |
78648 |
+ |
(TTTAT)n |
Simple_repeat |
| scaffold6298 |
78903 |
79019 |
+ |
(GTT)n |
Simple_repeat |
| scaffold6298 |
79008 |
79289 |
+ |
RS13054 |
Unspecified |
| scaffold6298 |
79885 |
79949 |
+ |
RS13054 |
Unspecified |
| scaffold6298 |
80395 |
80438 |
+ |
(ATTTG)n |
Simple_repeat |
| scaffold6298 |
80620 |
81176 |
+ |
RS4084 |
Unspecified |
| scaffold6298 |
80995 |
81365 |
+ |
RS5634 |
Unspecified |
| scaffold6298 |
81463 |
81756 |
+ |
RS4185 |
Unspecified |
| scaffold6298 |
82552 |
82585 |
+ |
(TTTA)n |
Simple_repeat |
| scaffold6298 |
83113 |
83808 |
+ |
Copia-102_GM-I |
LTR/Copia |
| scaffold6298 |
83997 |
84769 |
+ |
Copia-102_GM-I |
LTR/Copia |
| scaffold6298 |
85613 |
85647 |
+ |
(GAATTGT)n |
Simple_repeat |
| scaffold6298 |
86686 |
86721 |
+ |
(TGCTTCG)n |
Simple_repeat |
| scaffold6298 |
87216 |
88209 |
+ |
(GATGTTT)n |
Simple_repeat |
| scaffold6298 |
87216 |
87308 |
+ |
(GATGTTT)n |
Simple_repeat |
| scaffold6298 |
87284 |
88226 |
+ |
(CTTTTT)n |
Simple_repeat |
| scaffold6298 |
88193 |
88226 |
+ |
(CTTTTT)n |
Simple_repeat |
| scaffold6298 |
88395 |
88428 |
+ |
(CTTTTT)n |
Simple_repeat |
| scaffold6298 |
88473 |
88641 |
- |
RS13026 |
Unspecified |
| scaffold6298 |
88475 |
88897 |
+ |
RS2900 |
Unspecified |
| scaffold6298 |
88522 |
89179 |
+ |
RS435 |
Unspecified |