scaffold6447 Repeat List
genome |
start |
end |
strand |
repeat-name |
repeat-class |
scaffold6447 |
1 |
80 |
+ |
RS2887 |
Unspecified |
scaffold6447 |
29 |
571 |
+ |
RS6546 |
Unspecified |
scaffold6447 |
446 |
597 |
+ |
RS7295 |
Unspecified |
scaffold6447 |
982 |
1006 |
+ |
(A)n |
Simple_repeat |
scaffold6447 |
1134 |
1218 |
- |
RS565 |
Unspecified |
scaffold6447 |
1270 |
1411 |
+ |
RS3868 |
Unspecified |
scaffold6447 |
1483 |
1525 |
- |
RS3868 |
Unspecified |
scaffold6447 |
1532 |
1711 |
+ |
RS503 |
Unspecified |
scaffold6447 |
1980 |
1999 |
+ |
(A)n |
Simple_repeat |
scaffold6447 |
2001 |
2101 |
+ |
RS1792 |
Unspecified |
scaffold6447 |
2097 |
2201 |
+ |
RS11209 |
Unspecified |
scaffold6447 |
2934 |
3272 |
+ |
A-rich |
Low_complexity |
scaffold6447 |
3216 |
3476 |
+ |
A-rich |
Low_complexity |
scaffold6447 |
3216 |
3272 |
+ |
A-rich |
Low_complexity |
scaffold6447 |
3259 |
3476 |
+ |
RS15829 |
Unspecified |
scaffold6447 |
3504 |
3556 |
+ |
RS581 |
Unspecified |
scaffold6447 |
3644 |
3697 |
+ |
(TGGATA)n |
Simple_repeat |
scaffold6447 |
4090 |
4145 |
+ |
(CTGGAT)n |
Simple_repeat |
scaffold6447 |
4188 |
4411 |
+ |
RS11189 |
Unspecified |
scaffold6447 |
4459 |
4499 |
+ |
(GGGTC)n |
Simple_repeat |
scaffold6447 |
4853 |
4886 |
+ |
G-rich |
Low_complexity |
scaffold6447 |
4906 |
4966 |
- |
RS18405 |
Unspecified |
scaffold6447 |
4912 |
4963 |
- |
RS84 |
Unspecified |
scaffold6447 |
4973 |
5194 |
+ |
RS18 |
Unspecified |
scaffold6447 |
6407 |
6429 |
+ |
(G)n |
Simple_repeat |
scaffold6447 |
6439 |
6485 |
+ |
A-rich |
Low_complexity |
scaffold6447 |
6499 |
7121 |
- |
RS475 |
Unspecified |
scaffold6447 |
7191 |
7223 |
+ |
(TAA)n |
Simple_repeat |
scaffold6447 |
7420 |
7596 |
- |
RS388 |
Unspecified |
scaffold6447 |
8425 |
8838 |
+ |
RS2653 |
Unspecified |
scaffold6447 |
11161 |
11837 |
+ |
RS3412 |
Unspecified |
scaffold6447 |
11939 |
12307 |
+ |
RS7295 |
Unspecified |
scaffold6447 |
12960 |
13031 |
+ |
(ATTAA)n |
Simple_repeat |
scaffold6447 |
13223 |
13259 |
+ |
(AAAAAG)n |
Simple_repeat |
scaffold6447 |
13395 |
13429 |
+ |
A-rich |
Low_complexity |
scaffold6447 |
13542 |
13576 |
+ |
A-rich |
Low_complexity |
scaffold6447 |
13626 |
13686 |
+ |
PL24 |
Unspecified |
scaffold6447 |
13674 |
13779 |
+ |
PL24 |
Unspecified |
scaffold6447 |
13855 |
13958 |
+ |
RS8062 |
Unspecified |
scaffold6447 |
14654 |
14708 |
+ |
A-rich |
Low_complexity |
scaffold6447 |
15110 |
15273 |
+ |
RS1115 |
Unspecified |
scaffold6447 |
15548 |
17052 |
- |
ATCopia4I |
LTR/Copia |
scaffold6447 |
17466 |
18870 |
- |
Copia-71_VV-I |
LTR/Copia |
scaffold6447 |
18917 |
19747 |
- |
TY1_Copia |
TY1_Copia(TransposonPSI) |
scaffold6447 |
19463 |
19574 |
- |
ATCopia2I |
LTR/Copia |
scaffold6447 |
19598 |
19719 |
- |
ATCopia2I |
LTR/Copia |
scaffold6447 |
21915 |
22329 |
+ |
RS2653 |
Unspecified |
scaffold6447 |
23994 |
24640 |
+ |
RS3002 |
Unspecified |
scaffold6447 |
24634 |
24822 |
+ |
RS3412 |
Unspecified |
scaffold6447 |
24921 |
25156 |
+ |
RS8617 |
Unspecified |
scaffold6447 |
25158 |
26756 |
- |
ATCopia75_I-int |
LTR/Copia |
scaffold6447 |
27024 |
27879 |
- |
ATCopia75_I-int |
LTR/Copia |
scaffold6447 |
28134 |
28241 |
- |
ATCopia75_I-int |
LTR/Copia |
scaffold6447 |
28374 |
28419 |
- |
ATCopia75_I-int |
LTR/Copia |
scaffold6447 |
29338 |
29565 |
- |
ATCopia75_I-int |
LTR/Copia |
scaffold6447 |
29986 |
30221 |
+ |
RS8617 |
Unspecified |
scaffold6447 |
30224 |
30778 |
+ |
RS13211 |
Unspecified |
scaffold6447 |
30851 |
31218 |
+ |
RS7295 |
Unspecified |
scaffold6447 |
31346 |
31435 |
+ |
Copia-48_ZM-I |
LTR/Copia |
scaffold6447 |
32065 |
32265 |
- |
RS1186 |
Unspecified |
scaffold6447 |
32312 |
32369 |
+ |
(A)n |
Simple_repeat |
scaffold6447 |
32991 |
33055 |
+ |
A-rich |
Low_complexity |
scaffold6447 |
33214 |
33490 |
- |
RS1492 |
Unspecified |
scaffold6447 |
33457 |
33600 |
+ |
RS613 |
Unspecified |
scaffold6447 |
33601 |
33730 |
- |
RS1492 |
Unspecified |
scaffold6447 |
33765 |
33841 |
+ |
(TTT)n |
Simple_repeat |
scaffold6447 |
34165 |
34254 |
+ |
(CAA)n |
Simple_repeat |
scaffold6447 |
34484 |
34501 |
+ |
(T)n |
Simple_repeat |
scaffold6447 |
34563 |
34594 |
+ |
(TAATAT)n |
Simple_repeat |
scaffold6447 |
34904 |
35166 |
+ |
RS1984 |
Unspecified |
scaffold6447 |
35427 |
36194 |
+ |
TY1_Copia |
TY1_Copia(TransposonPSI) |
scaffold6447 |
35664 |
36620 |
+ |
TY1_Copia |
TY1_Copia(TransposonPSI) |
scaffold6447 |
36522 |
36986 |
+ |
TY1_Copia |
TY1_Copia(TransposonPSI) |
scaffold6447 |
37041 |
37259 |
- |
RS579 |
Unspecified |
scaffold6447 |
37315 |
37359 |
+ |
(T)n |
Simple_repeat |
scaffold6447 |
37942 |
38160 |
+ |
RS347 |
Unspecified |
scaffold6447 |
38768 |
39057 |
+ |
RS10016 |
Unspecified |
scaffold6447 |
39080 |
39179 |
+ |
RS15284 |
Unspecified |
scaffold6447 |
39379 |
39482 |
- |
RS333 |
Unspecified |
scaffold6447 |
39563 |
39751 |
- |
RS4806 |
Unspecified |
scaffold6447 |
41835 |
42286 |
+ |
RS6327 |
Unspecified |
scaffold6447 |
42470 |
42502 |
+ |
(ACAA)n |
Simple_repeat |
scaffold6447 |
42927 |
42957 |
+ |
A-rich |
Low_complexity |
scaffold6447 |
43651 |
43684 |
+ |
A-rich |
Low_complexity |
scaffold6447 |
44671 |
45086 |
+ |
RS2653 |
Unspecified |
scaffold6447 |
45208 |
45319 |
+ |
RS3706 |
Unspecified |
scaffold6447 |
45448 |
45478 |
+ |
(T)n |
Simple_repeat |
scaffold6447 |
46147 |
46172 |
+ |
(T)n |
Simple_repeat |
scaffold6447 |
47662 |
48381 |
+ |
RS3002 |
Unspecified |
scaffold6447 |
48226 |
48438 |
+ |
RS5087 |
Unspecified |
scaffold6447 |
48523 |
48822 |
+ |
RS4716 |
Unspecified |
scaffold6447 |
48622 |
48860 |
+ |
RS9300 |
Unspecified |
scaffold6447 |
48909 |
49630 |
+ |
RS3412 |
Unspecified |
scaffold6447 |
49726 |
50098 |
+ |
RS7295 |
Unspecified |
scaffold6447 |
50692 |
50736 |
+ |
RS15829 |
Unspecified |
scaffold6447 |
51103 |
51184 |
- |
PL9 |
Unspecified |
scaffold6447 |
51184 |
51368 |
+ |
RS14445 |
Unspecified |
scaffold6447 |
51403 |
51455 |
+ |
(TTTAT)n |
Simple_repeat |
scaffold6447 |
51960 |
52009 |
+ |
A-rich |
Low_complexity |
scaffold6447 |
52200 |
52229 |
+ |
(CT)n |
Simple_repeat |
scaffold6447 |
52354 |
52453 |
+ |
A-rich |
Low_complexity |
scaffold6447 |
52495 |
52559 |
+ |
(ACC)n |
Simple_repeat |
scaffold6447 |
52584 |
53342 |
- |
RS819 |
Unspecified |
scaffold6447 |
54118 |
54185 |
+ |
GA-rich |
Low_complexity |
scaffold6447 |
54505 |
54550 |
- |
RS5556 |
Unspecified |
scaffold6447 |
54505 |
54543 |
+ |
RS1492 |
Unspecified |
scaffold6447 |
56282 |
56694 |
+ |
RS2653 |
Unspecified |
scaffold6447 |
58030 |
58750 |
+ |
RS3002 |
Unspecified |
scaffold6447 |
58595 |
58807 |
+ |
RS5087 |
Unspecified |
scaffold6447 |
58850 |
59153 |
+ |
RS4716 |
Unspecified |
scaffold6447 |
58952 |
59190 |
+ |
RS9300 |
Unspecified |
scaffold6447 |
59238 |
59969 |
+ |
RS3412 |
Unspecified |
scaffold6447 |
60065 |
60422 |
+ |
RS7295 |
Unspecified |
scaffold6447 |
60466 |
60534 |
+ |
RS138 |
Unspecified |
scaffold6447 |
60539 |
60745 |
- |
RS666 |
Unspecified |
scaffold6447 |
60574 |
61101 |
- |
RS2015 |
Unspecified |
scaffold6447 |
61018 |
61112 |
- |
RS2100 |
Unspecified |
scaffold6447 |
61448 |
61818 |
+ |
Copia-32-I_VV |
LTR/Copia |
scaffold6447 |
62517 |
63731 |
+ |
Copia-32-I_VV |
LTR/Copia |
scaffold6447 |
64099 |
65738 |
+ |
Copia-82_GM-I |
LTR/Copia |
scaffold6447 |
65924 |
65956 |
+ |
(TTAT)n |
Simple_repeat |
scaffold6447 |
65957 |
66000 |
+ |
(ATT)n |
Simple_repeat |
scaffold6447 |
66061 |
66119 |
+ |
A-rich |
Low_complexity |
scaffold6447 |
66128 |
66398 |
- |
RS1217 |
Unspecified |
scaffold6447 |
66696 |
66921 |
- |
RS748 |
Unspecified |
scaffold6447 |
67507 |
67727 |
+ |
RS15993 |
Unspecified |
scaffold6447 |
68716 |
69118 |
+ |
RS2653 |
Unspecified |
scaffold6447 |
70732 |
71322 |
+ |
RS3002 |
Unspecified |
scaffold6447 |
71587 |
72145 |
- |
Copia-4_SL-LTR |
LTR/Copia |
scaffold6447 |
72323 |
72467 |
+ |
RS5087 |
Unspecified |
scaffold6447 |
72323 |
72486 |
+ |
RS6071 |
Unspecified |
scaffold6447 |
72525 |
72914 |
+ |
RS792 |
Unspecified |
scaffold6447 |
72911 |
73208 |
+ |
RS4716 |
Unspecified |
scaffold6447 |
73007 |
73245 |
+ |
RS9300 |
Unspecified |
scaffold6447 |
73292 |
74003 |
+ |
RS3412 |
Unspecified |
scaffold6447 |
74099 |
74459 |
+ |
RS7295 |
Unspecified |
scaffold6447 |
74848 |
75147 |
+ |
RS499 |
Unspecified |
scaffold6447 |
75353 |
75399 |
+ |
(AATATA)n |
Simple_repeat |
scaffold6447 |
75604 |
75633 |
+ |
(T)n |
Simple_repeat |
scaffold6447 |
76240 |
76269 |
+ |
(A)n |
Simple_repeat |
scaffold6447 |
76274 |
76363 |
+ |
RS16201 |
Unspecified |
scaffold6447 |
76596 |
76717 |
+ |
RS1649 |
Unspecified |
scaffold6447 |
76717 |
76755 |
+ |
(TTATTTT)n |
Simple_repeat |
scaffold6447 |
76807 |
76839 |
+ |
RS1095 |
Unspecified |
scaffold6447 |
76860 |
77014 |
+ |
RS1095 |
Unspecified |
scaffold6447 |
77012 |
77173 |
- |
RS4140 |
Unspecified |
scaffold6447 |
79147 |
79164 |
+ |
(A)n |
Simple_repeat |
scaffold6447 |
79668 |
79704 |
+ |
(AT)n |
Simple_repeat |
scaffold6447 |
79823 |
79865 |
+ |
A-rich |
Low_complexity |
scaffold6447 |
79993 |
80106 |
+ |
(TTC)n |
Simple_repeat |
scaffold6447 |
80979 |
81138 |
+ |
RS1657 |
Unspecified |
scaffold6447 |
81014 |
81352 |
+ |
RS1657 |
Unspecified |
scaffold6447 |
81227 |
81525 |
+ |
RS4015 |
Unspecified |
scaffold6447 |
81524 |
81634 |
- |
RS2171 |
Unspecified |
scaffold6447 |
82173 |
82316 |
+ |
RS6824 |
Unspecified |
scaffold6447 |
82950 |
83030 |
+ |
RS2936 |
Unspecified |
scaffold6447 |
82979 |
83042 |
+ |
RS3219 |
Unspecified |
scaffold6447 |
83039 |
83136 |
+ |
RS3219 |
Unspecified |
scaffold6447 |
83166 |
83208 |
+ |
(TTC)n |
Simple_repeat |
scaffold6447 |
83602 |
83640 |
+ |
(AAG)n |
Simple_repeat |
scaffold6447 |
83647 |
83687 |
+ |
GA-rich |
Low_complexity |
scaffold6447 |
83739 |
83872 |
+ |
RS10260 |
Unspecified |
scaffold6447 |
86323 |
86567 |
+ |
RS4820 |
Unspecified |
scaffold6447 |
87124 |
87413 |
+ |
RS10016 |
Unspecified |
scaffold6447 |
87436 |
87539 |
+ |
RS15284 |
Unspecified |
scaffold6447 |
89469 |
89954 |
+ |
RS6327 |
Unspecified |
scaffold6447 |
90258 |
90306 |
+ |
(A)n |
Simple_repeat |
scaffold6447 |
90307 |
90326 |
+ |
(T)n |
Simple_repeat |
scaffold6447 |
90756 |
90831 |
- |
RS15302 |
Unspecified |
scaffold6447 |
90771 |
91366 |
+ |
Gypsy-13_Mad-I |
LTR/Gypsy |
scaffold6447 |
91218 |
91366 |
+ |
Gypsy-13_Mad-I |
LTR/Gypsy |
scaffold6447 |
91594 |
91696 |
+ |
RS15848 |
Unspecified |
scaffold6447 |
91984 |
92049 |
+ |
(ATA)n |
Simple_repeat |
scaffold6447 |
92423 |
92455 |
+ |
(GGTGCG)n |
Simple_repeat |
scaffold6447 |
93966 |
94382 |
+ |
LINE |
LINE(TransposonPSI) |
scaffold6447 |
95541 |
95638 |
+ |
RS17927 |
Unspecified |
scaffold6447 |
95642 |
95660 |
+ |
(A)n |
Simple_repeat |
scaffold6447 |
95661 |
95699 |
+ |
(AAT)n |
Simple_repeat |
scaffold6447 |
96869 |
97283 |
+ |
RS2653 |
Unspecified |
scaffold6447 |
97362 |
97481 |
- |
RS322 |
Unspecified |
scaffold6447 |
98810 |
99221 |
+ |
RS2653 |
Unspecified |
scaffold6447 |
100803 |
101374 |
+ |
RS3002 |
Unspecified |
scaffold6447 |
101392 |
101674 |
+ |
RS3002 |
Unspecified |
scaffold6447 |
101522 |
101731 |
+ |
RS5087 |
Unspecified |
scaffold6447 |
101783 |
102086 |
+ |
RS4716 |
Unspecified |
scaffold6447 |
101885 |
102123 |
+ |
RS9300 |
Unspecified |
scaffold6447 |
102157 |
102908 |
+ |
RS3412 |
Unspecified |
scaffold6447 |
103483 |
103756 |
+ |
RS1 |
Unspecified |
scaffold6447 |
104338 |
104429 |
+ |
(TGGATA)n |
Simple_repeat |
scaffold6447 |
106164 |
106198 |
+ |
(T)n |
Simple_repeat |
scaffold6447 |
106465 |
106530 |
+ |
GA-rich |
Low_complexity |
scaffold6447 |
106629 |
106728 |
+ |
RS8410 |
Unspecified |
scaffold6447 |
106812 |
107093 |
+ |
RS4428 |
Unspecified |
scaffold6447 |
107149 |
107333 |
- |
RS6787 |
Unspecified |
scaffold6447 |
107329 |
107463 |
- |
PL188 |
Unspecified |
scaffold6447 |
107495 |
107566 |
+ |
(ATT)n |
Simple_repeat |
scaffold6447 |
107924 |
108086 |
+ |
RS2360 |
Unspecified |
scaffold6447 |
108161 |
108185 |
+ |
(AAT)n |
Simple_repeat |
scaffold6447 |
108253 |
108294 |
+ |
(TT)n |
Simple_repeat |
scaffold6447 |
108718 |
109003 |
- |
PL565 |
Unspecified |
scaffold6447 |
109312 |
109353 |
+ |
(TTTGA)n |
Simple_repeat |
scaffold6447 |
109375 |
109594 |
+ |
(A)n |
Simple_repeat |
scaffold6447 |
109375 |
109393 |
+ |
(A)n |
Simple_repeat |
scaffold6447 |
109384 |
109594 |
- |
PL565 |
Unspecified |
scaffold6447 |
110022 |
110060 |
+ |
A-rich |
Low_complexity |
scaffold6447 |
110764 |
110869 |
+ |
RS6149 |
Unspecified |
scaffold6447 |
111514 |
111550 |
+ |
(AATTTTG)n |
Simple_repeat |
scaffold6447 |
112109 |
112156 |
+ |
PL147 |
Unspecified |
scaffold6447 |
112371 |
112413 |
+ |
(TTC)n |
Simple_repeat |
scaffold6447 |
112969 |
113010 |
+ |
A-rich |
Low_complexity |
scaffold6447 |
113236 |
113300 |
+ |
(A)n |
Simple_repeat |
scaffold6447 |
113302 |
113443 |
+ |
RS613 |
Unspecified |
scaffold6447 |
113390 |
113453 |
- |
RS17658 |
Unspecified |
scaffold6447 |
115441 |
115465 |
+ |
(TAA)n |
Simple_repeat |
scaffold6447 |
115790 |
115831 |
+ |
A-rich |
Low_complexity |
scaffold6447 |
115877 |
116782 |
- |
RS402 |
Unspecified |
scaffold6447 |
117464 |
117642 |
- |
PL270 |
Unspecified |
scaffold6447 |
119323 |
119349 |
+ |
(A)n |
Simple_repeat |
scaffold6447 |
120046 |
120071 |
+ |
(A)n |
Simple_repeat |
scaffold6447 |
121830 |
121917 |
+ |
RS4 |
Unspecified |
scaffold6447 |
121912 |
122259 |
- |
RS42 |
Unspecified |
scaffold6447 |
122275 |
122440 |
+ |
RS4 |
Unspecified |
scaffold6447 |
126957 |
126993 |
+ |
A-rich |
Low_complexity |
scaffold6447 |
127911 |
127993 |
+ |
Copia-3_PTri-I |
LTR/Copia |
scaffold6447 |
129038 |
129091 |
+ |
(TCTTTT)n |
Simple_repeat |
scaffold6447 |
129470 |
129491 |
+ |
(TTT)n |
Simple_repeat |
scaffold6447 |
130410 |
130503 |
- |
RS16382 |
Unspecified |
scaffold6447 |
132659 |
133372 |
- |
PL114 |
Unspecified |
scaffold6447 |
133106 |
133516 |
+ |
PL422 |
Unspecified |
scaffold6447 |
133599 |
133671 |
+ |
Copia-3_PTri-I |
LTR/Copia |
scaffold6447 |
133672 |
133881 |
+ |
Copia-3_PTri-I |
LTR/Copia |
scaffold6447 |
135132 |
135153 |
+ |
(T)n |
Simple_repeat |