scaffold6563 Repeat List
genome |
start |
end |
strand |
repeat-name |
repeat-class |
scaffold6563 |
407 |
1934 |
+ |
RS192 |
Unspecified |
scaffold6563 |
514 |
1848 |
+ |
RS629 |
Unspecified |
scaffold6563 |
1878 |
1943 |
+ |
RS192 |
Unspecified |
scaffold6563 |
2125 |
2247 |
+ |
RS192 |
Unspecified |
scaffold6563 |
2187 |
2282 |
+ |
RS192 |
Unspecified |
scaffold6563 |
2243 |
2398 |
+ |
RS192 |
Unspecified |
scaffold6563 |
2599 |
2868 |
+ |
RS192 |
Unspecified |
scaffold6563 |
2628 |
2921 |
+ |
RS192 |
Unspecified |
scaffold6563 |
3042 |
3109 |
+ |
Gypsy-10_Pru-LTR |
LTR/Gypsy |
scaffold6563 |
3228 |
3420 |
- |
RS6985 |
Unspecified |
scaffold6563 |
3577 |
3625 |
+ |
A-rich |
Low_complexity |
scaffold6563 |
4142 |
4333 |
- |
RS6985 |
Unspecified |
scaffold6563 |
4485 |
4533 |
+ |
A-rich |
Low_complexity |
scaffold6563 |
5608 |
6019 |
+ |
RS247 |
Unspecified |
scaffold6563 |
7201 |
7283 |
+ |
RS108 |
Unspecified |
scaffold6563 |
7944 |
8705 |
- |
RS323 |
Unspecified |
scaffold6563 |
8705 |
9449 |
- |
RS323 |
Unspecified |
scaffold6563 |
8888 |
10732 |
+ |
RS832 |
Unspecified |
scaffold6563 |
10802 |
11062 |
- |
RS237 |
Unspecified |
scaffold6563 |
11325 |
11880 |
- |
RS72 |
Unspecified |
scaffold6563 |
12141 |
12194 |
+ |
(TAA)n |
Simple_repeat |
scaffold6563 |
12369 |
12434 |
+ |
(TATTT)n |
Simple_repeat |
scaffold6563 |
15546 |
15600 |
+ |
HAT-N10_Mad |
DNA/hAT-Ac |
scaffold6563 |
16091 |
16736 |
+ |
PL305 |
Unspecified |
scaffold6563 |
16141 |
16180 |
+ |
HAT-N10_Mad |
DNA/hAT-Ac |
scaffold6563 |
17348 |
17764 |
- |
RS265 |
Unspecified |
scaffold6563 |
17355 |
17717 |
- |
RS703 |
Unspecified |
scaffold6563 |
17934 |
18007 |
+ |
PL699 |
Unspecified |
scaffold6563 |
18862 |
18894 |
+ |
(AACTAA)n |
Simple_repeat |
scaffold6563 |
20020 |
20234 |
- |
RS26 |
Unspecified |
scaffold6563 |
20324 |
20358 |
+ |
A-rich |
Low_complexity |
scaffold6563 |
24388 |
24714 |
+ |
RS14906 |
Unspecified |
scaffold6563 |
25330 |
25365 |
+ |
(A)n |
Simple_repeat |
scaffold6563 |
25533 |
25580 |
+ |
(T)n |
Simple_repeat |
scaffold6563 |
25663 |
25836 |
- |
RS233 |
Unspecified |
scaffold6563 |
25682 |
25843 |
+ |
RS2719 |
Unspecified |
scaffold6563 |
31175 |
31230 |
+ |
(TTGATTA)n |
Simple_repeat |
scaffold6563 |
32225 |
32599 |
+ |
Gypsy-137_GM-I |
LTR/Gypsy |
scaffold6563 |
32692 |
32898 |
+ |
PL720 |
Unspecified |
scaffold6563 |
37693 |
38079 |
+ |
RS623 |
Unspecified |
scaffold6563 |
38128 |
38350 |
+ |
(CTGAA)n |
Simple_repeat |
scaffold6563 |
38339 |
38476 |
+ |
RS623 |
Unspecified |
scaffold6563 |
39359 |
39501 |
+ |
RS1918 |
Unspecified |
scaffold6563 |
39989 |
40135 |
+ |
T-rich |
Low_complexity |
scaffold6563 |
40159 |
40213 |
+ |
(TTTGA)n |
Simple_repeat |
scaffold6563 |
40759 |
41121 |
+ |
RS2022 |
Unspecified |
scaffold6563 |
41589 |
41671 |
+ |
(TATAT)n |
Simple_repeat |
scaffold6563 |
42430 |
42484 |
+ |
Gypsy-13_SMo-LTR |
LTR/Gypsy |
scaffold6563 |
42873 |
43130 |
- |
RS68 |
Unspecified |
scaffold6563 |
42933 |
43130 |
+ |
RS757 |
Unspecified |
scaffold6563 |
43197 |
43393 |
+ |
RS757 |
Unspecified |
scaffold6563 |
43491 |
43549 |
+ |
(CAGTT)n |
Simple_repeat |
scaffold6563 |
43565 |
43696 |
+ |
RS549 |
Unspecified |
scaffold6563 |
43732 |
43780 |
+ |
(TTA)n |
Simple_repeat |
scaffold6563 |
43781 |
43804 |
+ |
(GAT)n |
Simple_repeat |
scaffold6563 |
43938 |
43973 |
+ |
(TAA)n |
Simple_repeat |
scaffold6563 |
46024 |
46068 |
+ |
(CTGAA)n |
Simple_repeat |
scaffold6563 |
46217 |
46398 |
+ |
RS79 |
Unspecified |
scaffold6563 |
46501 |
46561 |
+ |
(CTTTTCA)n |
Simple_repeat |
scaffold6563 |
46678 |
46706 |
+ |
(TTTA)n |
Simple_repeat |
scaffold6563 |
47665 |
47800 |
- |
RS8642 |
Unspecified |
scaffold6563 |
48914 |
49154 |
+ |
RS3299 |
Unspecified |
scaffold6563 |
49155 |
49520 |
- |
RS13362 |
Unspecified |
scaffold6563 |
50340 |
50426 |
+ |
Copia-3_PTri-I |
LTR/Copia |
scaffold6563 |
51460 |
51483 |
+ |
(T)n |
Simple_repeat |
scaffold6563 |
55741 |
55766 |
+ |
(T)n |
Simple_repeat |
scaffold6563 |
56267 |
56310 |
+ |
A-rich |
Low_complexity |
scaffold6563 |
56742 |
56759 |
+ |
(A)n |
Simple_repeat |
scaffold6563 |
56799 |
57116 |
- |
RS520 |
Unspecified |
scaffold6563 |
57117 |
57435 |
- |
ATENSPM1 |
DNA/CMC-EnSpm |
scaffold6563 |
58163 |
58208 |
+ |
A-rich |
Low_complexity |
scaffold6563 |
58434 |
58881 |
- |
RS1970 |
Unspecified |
scaffold6563 |
61295 |
61732 |
- |
RS315 |
Unspecified |
scaffold6563 |
61378 |
61916 |
- |
RS552 |
Unspecified |
scaffold6563 |
61917 |
62450 |
+ |
TY1_Copia |
TY1_Copia(TransposonPSI) |
scaffold6563 |
61917 |
62234 |
+ |
TY1_Copia |
TY1_Copia(TransposonPSI) |
scaffold6563 |
61918 |
62228 |
+ |
Copia25-PTR_I-int |
LTR/Copia |
scaffold6563 |
61918 |
62450 |
+ |
Copia25-PTR_I-int |
LTR/Copia |
scaffold6563 |
62116 |
62450 |
- |
PL816 |
Unspecified |
scaffold6563 |
62515 |
62609 |
+ |
ATENSPM2 |
DNA/CMC-EnSpm |
scaffold6563 |
62546 |
62709 |
- |
ATENSPM2 |
DNA/CMC-EnSpm |
scaffold6563 |
62886 |
63144 |
+ |
RS13405 |
Unspecified |
scaffold6563 |
62925 |
63145 |
- |
RS10269 |
Unspecified |
scaffold6563 |
63579 |
63637 |
+ |
A-rich |
Low_complexity |
scaffold6563 |
64633 |
64682 |
+ |
A-rich |
Low_complexity |
scaffold6563 |
65747 |
65978 |
+ |
PL469 |
Unspecified |
scaffold6563 |
66321 |
66339 |
+ |
(T)n |
Simple_repeat |
scaffold6563 |
66811 |
66989 |
+ |
RS73 |
Unspecified |
scaffold6563 |
67006 |
67107 |
- |
RS2496 |
Unspecified |
scaffold6563 |
67745 |
67797 |
+ |
COPIA3-I_LC |
LTR/Copia |
scaffold6563 |
68070 |
68086 |
+ |
(TGT)n |
Simple_repeat |
scaffold6563 |
68964 |
68998 |
+ |
(AATGTAC)n |
Simple_repeat |
scaffold6563 |
69470 |
69498 |
+ |
(TGT)n |
Simple_repeat |
scaffold6563 |
69534 |
69561 |
+ |
(GTT)n |
Simple_repeat |
scaffold6563 |
69909 |
69955 |
+ |
(AACTG)n |
Simple_repeat |
scaffold6563 |
69980 |
70066 |
+ |
(CTGAA)n |
Simple_repeat |
scaffold6563 |
70149 |
70639 |
+ |
PL271 |
Unspecified |
scaffold6563 |
71163 |
71232 |
+ |
(AAT)n |
Simple_repeat |
scaffold6563 |
71580 |
71654 |
+ |
(ATTT)n |
Simple_repeat |
scaffold6563 |
72109 |
72240 |
+ |
LTR-2_MX-LTR |
LTR |
scaffold6563 |
72607 |
72857 |
+ |
RS41 |
Unspecified |
scaffold6563 |
73043 |
73146 |
+ |
RS356 |
Unspecified |
scaffold6563 |
73248 |
73376 |
- |
RS1533 |
Unspecified |
scaffold6563 |
73482 |
73523 |
+ |
(A)n |
Simple_repeat |
scaffold6563 |
73931 |
73956 |
+ |
(AAAT)n |
Simple_repeat |
scaffold6563 |
74169 |
74215 |
+ |
(T)n |
Simple_repeat |
scaffold6563 |
74503 |
74531 |
+ |
(TTTTTGT)n |
Simple_repeat |
scaffold6563 |
74532 |
74554 |
+ |
(T)n |
Simple_repeat |
scaffold6563 |
74569 |
74597 |
+ |
A-rich |
Low_complexity |
scaffold6563 |
75452 |
75572 |
- |
PL649 |
Unspecified |
scaffold6563 |
75552 |
75783 |
+ |
RS10268 |
Unspecified |
scaffold6563 |
75625 |
76083 |
+ |
RS932 |
Unspecified |
scaffold6563 |
76007 |
76266 |
+ |
RS932 |
Unspecified |
scaffold6563 |
76432 |
76460 |
+ |
(TTAT)n |
Simple_repeat |
scaffold6563 |
76578 |
76606 |
+ |
A-rich |
Low_complexity |
scaffold6563 |
76956 |
77117 |
- |
RS54 |
Unspecified |
scaffold6563 |
77390 |
77626 |
+ |
RS1180 |
Unspecified |
scaffold6563 |
78651 |
78721 |
+ |
HAT-N10_Mad |
DNA/hAT-Ac |
scaffold6563 |
78928 |
79011 |
+ |
ATENSPM1 |
DNA/CMC-EnSpm |
scaffold6563 |
83143 |
83454 |
+ |
ATENSPM4 |
DNA/CMC-EnSpm |
scaffold6563 |
83455 |
83709 |
- |
PL483 |
Unspecified |
scaffold6563 |
83843 |
83883 |
+ |
(TA)n |
Simple_repeat |
scaffold6563 |
85135 |
85154 |
+ |
(T)n |
Simple_repeat |
scaffold6563 |
85329 |
85367 |
+ |
(ATC)n |
Simple_repeat |
scaffold6563 |
85917 |
85968 |
+ |
(TGG)n |
Simple_repeat |
scaffold6563 |
86400 |
86439 |
+ |
(TAACTTA)n |
Simple_repeat |
scaffold6563 |
86974 |
87026 |
+ |
(TAAT)n |
Simple_repeat |
scaffold6563 |
88197 |
88239 |
+ |
(TA)n |
Simple_repeat |
scaffold6563 |
88490 |
88520 |
+ |
(ATTTATC)n |
Simple_repeat |
scaffold6563 |
88610 |
88637 |
+ |
(A)n |
Simple_repeat |
scaffold6563 |
94772 |
94845 |
+ |
(GTTTACT)n |
Simple_repeat |
scaffold6563 |
95651 |
95842 |
+ |
RS16206 |
Unspecified |
scaffold6563 |
96191 |
96236 |
+ |
(ATCC)n |
Simple_repeat |
scaffold6563 |
96306 |
96357 |
+ |
GA-rich |
Low_complexity |
scaffold6563 |
96505 |
96529 |
+ |
(T)n |
Simple_repeat |
scaffold6563 |
96682 |
96711 |
+ |
(ATGG)n |
Simple_repeat |
scaffold6563 |
96725 |
96774 |
+ |
(ATCC)n |
Simple_repeat |
scaffold6563 |
96847 |
96876 |
+ |
(CCTACG)n |
Simple_repeat |
scaffold6563 |
96898 |
96921 |
+ |
(T)n |
Simple_repeat |
scaffold6563 |
97152 |
97252 |
+ |
A-rich |
Low_complexity |
scaffold6563 |
97413 |
97429 |
+ |
(CAGTT)n |
Simple_repeat |
scaffold6563 |
97430 |
97508 |
+ |
(TTCAG)n |
Simple_repeat |
scaffold6563 |
97509 |
97541 |
+ |
(CAGTT)n |
Simple_repeat |
scaffold6563 |
97542 |
97614 |
+ |
(TAT)n |
Simple_repeat |
scaffold6563 |
97615 |
97691 |
+ |
(CAGTT)n |
Simple_repeat |
scaffold6563 |
97801 |
97828 |
+ |
(T)n |
Simple_repeat |
scaffold6563 |
97837 |
98008 |
+ |
(CAGTT)n |
Simple_repeat |
scaffold6563 |
100536 |
100625 |
+ |
(CAA)n |
Simple_repeat |
scaffold6563 |
100632 |
100655 |
+ |
(A)n |
Simple_repeat |
scaffold6563 |
101397 |
101787 |
- |
RS29 |
Unspecified |
scaffold6563 |
101774 |
102271 |
+ |
PL271 |
Unspecified |
scaffold6563 |
102695 |
102732 |
+ |
(ATT)n |
Simple_repeat |
scaffold6563 |
103059 |
103202 |
- |
RS47 |
Unspecified |
scaffold6563 |
103205 |
103240 |
+ |
(TATT)n |
Simple_repeat |
scaffold6563 |
103241 |
103406 |
+ |
(ATT)n |
Simple_repeat |
scaffold6563 |
103407 |
103423 |
+ |
(TATT)n |
Simple_repeat |
scaffold6563 |
103428 |
103533 |
+ |
(TCTGAAGTTT)n |
Simple_repeat |
scaffold6563 |
103568 |
103832 |
+ |
RS106 |
Unspecified |
scaffold6563 |
105193 |
105398 |
- |
Helitron1 |
RC/Helitron |
scaffold6563 |
105643 |
105866 |
- |
HELMET3 |
RC/Helitron |
scaffold6563 |
105890 |
106847 |
+ |
PL875 |
Unspecified |
scaffold6563 |
106853 |
107065 |
+ |
PL146 |
Unspecified |
scaffold6563 |
107140 |
107321 |
+ |
(CCCGA)n |
Simple_repeat |
scaffold6563 |
107489 |
107632 |
+ |
(CCCGA)n |
Simple_repeat |
scaffold6563 |
107866 |
107902 |
+ |
(GTGAGTA)n |
Simple_repeat |
scaffold6563 |
108508 |
108527 |
+ |
(T)n |
Simple_repeat |
scaffold6563 |
108858 |
108898 |
+ |
(TCCCTT)n |
Simple_repeat |
scaffold6563 |
109254 |
109345 |
+ |
HADES_TA |
DNA/TcMar-Stowaway |
scaffold6563 |
109931 |
109955 |
+ |
(A)n |
Simple_repeat |
scaffold6563 |
113278 |
113295 |
+ |
(A)n |
Simple_repeat |
scaffold6563 |
113467 |
113508 |
+ |
(TTATGT)n |
Simple_repeat |
scaffold6563 |
118999 |
119016 |
+ |
(A)n |
Simple_repeat |
scaffold6563 |
119020 |
119584 |
+ |
Copia-4_SL-LTR |
LTR/Copia |
scaffold6563 |
119795 |
119873 |
- |
RS14418 |
Unspecified |
scaffold6563 |
119960 |
119976 |
+ |
(T)n |
Simple_repeat |
scaffold6563 |
120240 |
120304 |
+ |
(TCT)n |
Simple_repeat |
scaffold6563 |
120868 |
121212 |
- |
RS458 |
Unspecified |
scaffold6563 |
121490 |
122021 |
+ |
(AT)n |
Simple_repeat |
scaffold6563 |
121676 |
122074 |
+ |
(AT)n |
Simple_repeat |
scaffold6563 |
121676 |
122021 |
+ |
(AT)n |
Simple_repeat |
scaffold6563 |
121676 |
122068 |
+ |
(AT)n |
Simple_repeat |
scaffold6563 |
122005 |
122074 |
+ |
RS877 |
Unspecified |
scaffold6563 |
122012 |
122068 |
- |
RS4164 |
Unspecified |
scaffold6563 |
122022 |
122135 |
+ |
RS3355 |
Unspecified |
scaffold6563 |
122043 |
122231 |
- |
RS4164 |
Unspecified |
scaffold6563 |
122970 |
123004 |
+ |
(TATTT)n |
Simple_repeat |
scaffold6563 |
123196 |
123231 |
+ |
A-rich |
Low_complexity |
scaffold6563 |
123380 |
123617 |
+ |
RS4 |
Unspecified |
scaffold6563 |
124008 |
124036 |
+ |
A-rich |
Low_complexity |
scaffold6563 |
124110 |
124126 |
+ |
(A)n |
Simple_repeat |
scaffold6563 |
124773 |
124803 |
+ |
(T)n |
Simple_repeat |
scaffold6563 |
124815 |
124841 |
+ |
(T)n |
Simple_repeat |
scaffold6563 |
125097 |
125308 |
- |
RS4 |
Unspecified |
scaffold6563 |
125308 |
126084 |
- |
PL103 |
Unspecified |
scaffold6563 |
126060 |
126119 |
- |
RS4 |
Unspecified |
scaffold6563 |
127085 |
127122 |
+ |
(TTAT)n |
Simple_repeat |
scaffold6563 |
127645 |
127783 |
- |
RS16382 |
Unspecified |
scaffold6563 |
127687 |
127795 |
+ |
RS13929 |
Unspecified |
scaffold6563 |
128815 |
128955 |
+ |
RS14787 |
Unspecified |
scaffold6563 |
128831 |
129135 |
+ |
RS518 |
Unspecified |
scaffold6563 |
131054 |
131087 |
+ |
(A)n |
Simple_repeat |
scaffold6563 |
131134 |
131175 |
+ |
(A)n |
Simple_repeat |
scaffold6563 |
131531 |
131617 |
+ |
RS739 |
Unspecified |
scaffold6563 |
132827 |
133027 |
+ |
EnSpm1_SB |
DNA/CMC-EnSpm |
scaffold6563 |
133124 |
133174 |
+ |
(AAC)n |
Simple_repeat |
scaffold6563 |
133175 |
133395 |
+ |
(AAT)n |
Simple_repeat |
scaffold6563 |
133406 |
133497 |
+ |
(TTCAG)n |
Simple_repeat |
scaffold6563 |
133928 |
133969 |
- |
RS4475 |
Unspecified |
scaffold6563 |
134472 |
134568 |
+ |
RS18358 |
Unspecified |
scaffold6563 |
134733 |
134806 |
- |
RS376 |
Unspecified |
scaffold6563 |
134809 |
135102 |
+ |
Copia-66_GM-I |
LTR/Copia |
scaffold6563 |
135140 |
135173 |
+ |
A-rich |
Low_complexity |
scaffold6563 |
135260 |
135302 |
+ |
A-rich |
Low_complexity |
scaffold6563 |
135390 |
135422 |
+ |
(TTTTTAT)n |
Simple_repeat |
scaffold6563 |
135423 |
135487 |
+ |
(TATAAT)n |
Simple_repeat |
scaffold6563 |
135557 |
135586 |
+ |
(A)n |
Simple_repeat |
scaffold6563 |
135967 |
135984 |
+ |
(TTT)n |
Simple_repeat |
scaffold6563 |
136225 |
136288 |
+ |
(TTTAAT)n |
Simple_repeat |
scaffold6563 |
139508 |
139675 |
- |
RS43 |
Unspecified |
scaffold6563 |
140363 |
140392 |
+ |
(ATAATT)n |
Simple_repeat |
scaffold6563 |
140520 |
140579 |
+ |
LTR-2_MX-LTR |
LTR |
scaffold6563 |
141038 |
141067 |
+ |
(T)n |
Simple_repeat |
scaffold6563 |
142075 |
142150 |
- |
RS13501 |
Unspecified |
scaffold6563 |
142085 |
142266 |
- |
RS38 |
Unspecified |
scaffold6563 |
144797 |
145053 |
+ |
RS513 |
Unspecified |
scaffold6563 |
145116 |
145333 |
- |
RS1793 |
Unspecified |
scaffold6563 |
145132 |
145323 |
- |
PL744 |
Unspecified |
scaffold6563 |
146533 |
146789 |
+ |
RS17820 |
Unspecified |
scaffold6563 |
146891 |
146929 |
+ |
(TA)n |
Simple_repeat |
scaffold6563 |
147331 |
147389 |
+ |
(ATT)n |
Simple_repeat |
scaffold6563 |
147390 |
147430 |
+ |
(ATAG)n |
Simple_repeat |
scaffold6563 |
147632 |
147730 |
- |
RS3962 |
Unspecified |
scaffold6563 |
147906 |
147982 |
+ |
(TTTACAA)n |
Simple_repeat |
scaffold6563 |
148594 |
148951 |
- |
RS8237 |
Unspecified |
scaffold6563 |
148736 |
149123 |
+ |
RS4378 |
Unspecified |
scaffold6563 |
149233 |
149445 |
+ |
(ATTTT)n |
Simple_repeat |
scaffold6563 |
149390 |
149445 |
+ |
(ATTTT)n |
Simple_repeat |
scaffold6563 |
149557 |
149716 |
+ |
RS3317 |
Unspecified |
scaffold6563 |
149649 |
150187 |
+ |
RS17820 |
Unspecified |
scaffold6563 |
150974 |
151001 |
+ |
(TA)n |
Simple_repeat |
scaffold6563 |
151245 |
151348 |
- |
RS563 |
Unspecified |
scaffold6563 |
152219 |
152574 |
+ |
PL436 |
Unspecified |
scaffold6563 |
153539 |
153650 |
- |
LINE1-8_OS |
LINE/L1 |
scaffold6563 |
153857 |
154724 |
- |
L1-1_GM |
LINE/L1 |
scaffold6563 |
157294 |
157334 |
+ |
PL436 |
Unspecified |
scaffold6563 |
157923 |
157971 |
+ |
A-rich |
Low_complexity |
scaffold6563 |
157996 |
158184 |
- |
RS17860 |
Unspecified |
scaffold6563 |
158260 |
158318 |
+ |
RS888 |
Unspecified |
scaffold6563 |
158635 |
158757 |
- |
RS7290 |
Unspecified |
scaffold6563 |
158635 |
158744 |
+ |
RS22 |
Unspecified |
scaffold6563 |
159217 |
159289 |
+ |
(TTATA)n |
Simple_repeat |
scaffold6563 |
159669 |
159707 |
+ |
RS888 |
Unspecified |
scaffold6563 |
159863 |
159882 |
+ |
(A)n |
Simple_repeat |
scaffold6563 |
160896 |
160995 |
+ |
(TCTCCTT)n |
Simple_repeat |
scaffold6563 |
160953 |
161000 |
+ |
(TTCTTTC)n |
Simple_repeat |
scaffold6563 |
161101 |
161117 |
+ |
(T)n |
Simple_repeat |
scaffold6563 |
161439 |
161680 |
- |
RS897 |
Unspecified |
scaffold6563 |
161801 |
161849 |
+ |
A-rich |
Low_complexity |
scaffold6563 |
162088 |
162268 |
+ |
RS1180 |
Unspecified |
scaffold6563 |
162517 |
162928 |
- |
RS851 |
Unspecified |
scaffold6563 |
162888 |
162984 |
+ |
RS3314 |
Unspecified |