scaffold6642 Repeat List
genome |
start |
end |
strand |
repeat-name |
repeat-class |
scaffold6642 |
24 |
308 |
- |
RS1762 |
Unspecified |
scaffold6642 |
110 |
430 |
+ |
RS7309 |
Unspecified |
scaffold6642 |
573 |
897 |
- |
RS4142 |
Unspecified |
scaffold6642 |
1045 |
1124 |
- |
RS86 |
Unspecified |
scaffold6642 |
1126 |
1593 |
- |
RS8822 |
Unspecified |
scaffold6642 |
1289 |
2172 |
- |
RS1083 |
Unspecified |
scaffold6642 |
1429 |
2679 |
- |
RS1875 |
Unspecified |
scaffold6642 |
2734 |
2765 |
- |
RS3590 |
Unspecified |
scaffold6642 |
2915 |
2993 |
+ |
(TAATTA)n |
Simple_repeat |
scaffold6642 |
3216 |
3252 |
+ |
A-rich |
Low_complexity |
scaffold6642 |
3370 |
3395 |
+ |
(AAC)n |
Simple_repeat |
scaffold6642 |
3748 |
4004 |
- |
Copia7-ZM_I-int |
LTR/Copia |
scaffold6642 |
4099 |
4812 |
- |
TY1_Copia |
TY1_Copia(TransposonPSI) |
scaffold6642 |
4983 |
5017 |
+ |
(GAAAA)n |
Simple_repeat |
scaffold6642 |
7242 |
8076 |
- |
RS260 |
Unspecified |
scaffold6642 |
8074 |
8435 |
- |
PL675 |
Unspecified |
scaffold6642 |
8878 |
8910 |
+ |
(TTA)n |
Simple_repeat |
scaffold6642 |
9343 |
9381 |
+ |
(T)n |
Simple_repeat |
scaffold6642 |
12666 |
12904 |
- |
RS4449 |
Unspecified |
scaffold6642 |
13517 |
13730 |
+ |
RS86 |
Unspecified |
scaffold6642 |
14791 |
14862 |
+ |
RS25 |
Unspecified |
scaffold6642 |
15996 |
16051 |
+ |
Gypsy-87_SB-I |
LTR/Gypsy |
scaffold6642 |
16164 |
16218 |
+ |
(ATTTTAG)n |
Simple_repeat |
scaffold6642 |
17483 |
17514 |
+ |
(TGG)n |
Simple_repeat |
scaffold6642 |
17515 |
17542 |
+ |
(TGGAGG)n |
Simple_repeat |
scaffold6642 |
19383 |
19499 |
- |
RS15138 |
Unspecified |
scaffold6642 |
19919 |
20231 |
- |
RS463 |
Unspecified |
scaffold6642 |
20768 |
20825 |
+ |
STOWAWAY2_SB |
DNA/TcMar-Stowaway |
scaffold6642 |
20843 |
20943 |
- |
RS3320 |
Unspecified |
scaffold6642 |
20856 |
20952 |
- |
RS1726 |
Unspecified |
scaffold6642 |
21503 |
21673 |
+ |
RS13061 |
Unspecified |
scaffold6642 |
21670 |
22000 |
+ |
RS1920 |
Unspecified |
scaffold6642 |
22104 |
22472 |
- |
PL223 |
Unspecified |
scaffold6642 |
22125 |
22283 |
- |
RS57 |
Unspecified |
scaffold6642 |
22538 |
22610 |
+ |
(TTAA)n |
Simple_repeat |
scaffold6642 |
23217 |
23428 |
- |
Copia-3_PTri-I |
LTR/Copia |
scaffold6642 |
23429 |
23500 |
- |
Copia-3_PTri-I |
LTR/Copia |
scaffold6642 |
24132 |
24591 |
+ |
RS1922 |
Unspecified |
scaffold6642 |
24672 |
24816 |
+ |
RS7588 |
Unspecified |
scaffold6642 |
25025 |
26117 |
- |
RS1730 |
Unspecified |
scaffold6642 |
26184 |
26470 |
- |
RS5223 |
Unspecified |
scaffold6642 |
26232 |
26995 |
- |
RS3447 |
Unspecified |
scaffold6642 |
27060 |
27132 |
+ |
GA-rich |
Low_complexity |
scaffold6642 |
27369 |
27414 |
- |
RS13061 |
Unspecified |
scaffold6642 |
27369 |
27424 |
- |
PL653 |
Unspecified |
scaffold6642 |
27559 |
27828 |
- |
RS1 |
Unspecified |
scaffold6642 |
29782 |
29835 |
+ |
(T)n |
Simple_repeat |
scaffold6642 |
30276 |
30321 |
+ |
(TATAA)n |
Simple_repeat |
scaffold6642 |
30416 |
30503 |
+ |
(ATA)n |
Simple_repeat |
scaffold6642 |
30741 |
30772 |
+ |
A-rich |
Low_complexity |
scaffold6642 |
32550 |
32586 |
+ |
(ACAGA)n |
Simple_repeat |
scaffold6642 |
33075 |
33495 |
+ |
PL903 |
Unspecified |
scaffold6642 |
35507 |
35531 |
+ |
(GAA)n |
Simple_repeat |
scaffold6642 |
35755 |
35793 |
+ |
(TTCTATTGC)n |
Simple_repeat |
scaffold6642 |
36228 |
36273 |
- |
RS786 |
Unspecified |
scaffold6642 |
36382 |
37488 |
- |
Gret1_I-int |
LTR/Gypsy |
scaffold6642 |
37854 |
38068 |
- |
Atlantys2_I-int |
LTR/Gypsy |
scaffold6642 |
38156 |
38965 |
- |
Atlantys2_I-int |
LTR/Gypsy |
scaffold6642 |
42011 |
42567 |
- |
PL743 |
Unspecified |
scaffold6642 |
42981 |
43019 |
+ |
A-rich |
Low_complexity |
scaffold6642 |
43787 |
44160 |
- |
PL844 |
Unspecified |
scaffold6642 |
44588 |
44820 |
- |
Gypsy-47_Mad-I |
LTR/Gypsy |
scaffold6642 |
44837 |
44965 |
- |
RS559 |
Unspecified |
scaffold6642 |
45407 |
45444 |
+ |
(ATATAAT)n |
Simple_repeat |
scaffold6642 |
45535 |
45606 |
+ |
PL17 |
Unspecified |
scaffold6642 |
45799 |
45852 |
+ |
A-rich |
Low_complexity |
scaffold6642 |
45936 |
46104 |
- |
RS4894 |
Unspecified |
scaffold6642 |
46052 |
46126 |
- |
RS3291 |
Unspecified |
scaffold6642 |
46144 |
46349 |
+ |
RS1331 |
Unspecified |
scaffold6642 |
46320 |
46552 |
+ |
RS1331 |
Unspecified |
scaffold6642 |
46629 |
46692 |
- |
MuDR-5_VV |
DNA/MULE-MuDR |
scaffold6642 |
48214 |
48259 |
+ |
(TTTTAA)n |
Simple_repeat |
scaffold6642 |
48928 |
49879 |
+ |
RS6062 |
Unspecified |
scaffold6642 |
49745 |
49929 |
+ |
RS10878 |
Unspecified |
scaffold6642 |
51596 |
51614 |
+ |
(A)n |
Simple_repeat |
scaffold6642 |
52191 |
52209 |
+ |
(A)n |
Simple_repeat |
scaffold6642 |
52276 |
52950 |
+ |
RS2534 |
Unspecified |
scaffold6642 |
52601 |
53163 |
- |
RS2171 |
Unspecified |
scaffold6642 |
53164 |
53332 |
+ |
RS4894 |
Unspecified |
scaffold6642 |
57736 |
57759 |
+ |
(TA)n |
Simple_repeat |
scaffold6642 |
58044 |
58164 |
- |
RS16395 |
Unspecified |
scaffold6642 |
58800 |
58833 |
+ |
(TA)n |
Simple_repeat |
scaffold6642 |
62804 |
62828 |
+ |
(TA)n |
Simple_repeat |
scaffold6642 |
63156 |
63187 |
+ |
(ATG)n |
Simple_repeat |
scaffold6642 |
65117 |
65152 |
+ |
A-rich |
Low_complexity |
scaffold6642 |
65452 |
65489 |
+ |
(TTATCA)n |
Simple_repeat |
scaffold6642 |
65549 |
66343 |
- |
RS402 |
Unspecified |
scaffold6642 |
67144 |
67548 |
+ |
RS7096 |
Unspecified |
scaffold6642 |
67589 |
67801 |
+ |
RS11408 |
Unspecified |
scaffold6642 |
71644 |
71763 |
+ |
RS8431 |
Unspecified |
scaffold6642 |
72797 |
73016 |
- |
RS2560 |
Unspecified |
scaffold6642 |
72997 |
73110 |
- |
PL922 |
Unspecified |
scaffold6642 |
73521 |
73584 |
+ |
(ACAGCA)n |
Simple_repeat |
scaffold6642 |
74081 |
74205 |
+ |
RS10468 |
Unspecified |
scaffold6642 |
75601 |
75817 |
+ |
RS9922 |
Unspecified |
scaffold6642 |
75828 |
76124 |
- |
RS1915 |
Unspecified |
scaffold6642 |
76485 |
76514 |
+ |
(GAGT)n |
Simple_repeat |
scaffold6642 |
77657 |
77733 |
+ |
(ACCACCA)n |
Simple_repeat |
scaffold6642 |
77763 |
77805 |
+ |
A-rich |
Low_complexity |
scaffold6642 |
78636 |
78658 |
+ |
(ATCA)n |
Simple_repeat |
scaffold6642 |
78826 |
78987 |
- |
RS9551 |
Unspecified |
scaffold6642 |
79400 |
79429 |
+ |
(GGT)n |
Simple_repeat |
scaffold6642 |
82389 |
82505 |
- |
RS17460 |
Unspecified |
scaffold6642 |
82477 |
82682 |
- |
RS3472 |
Unspecified |
scaffold6642 |
82821 |
83086 |
+ |
RS12964 |
Unspecified |
scaffold6642 |
83356 |
83405 |
+ |
RS10156 |
Unspecified |
scaffold6642 |
83502 |
83538 |
+ |
(ATCATC)n |
Simple_repeat |
scaffold6642 |
83904 |
84025 |
+ |
RS8431 |
Unspecified |
scaffold6642 |
85654 |
85887 |
- |
RS11490 |
Unspecified |
scaffold6642 |
85999 |
86111 |
+ |
RS1321 |
Unspecified |
scaffold6642 |
85999 |
86128 |
+ |
RS1321 |
Unspecified |
scaffold6642 |
86042 |
86146 |
+ |
RS1321 |
Unspecified |
scaffold6642 |
87202 |
87295 |
- |
RS12199 |
Unspecified |
scaffold6642 |
87626 |
87701 |
- |
RS3518 |
Unspecified |
scaffold6642 |
87759 |
87989 |
- |
RS11490 |
Unspecified |
scaffold6642 |
88170 |
88230 |
+ |
(GCT)n |
Simple_repeat |
scaffold6642 |
88524 |
88606 |
+ |
RS11563 |
Unspecified |
scaffold6642 |
88535 |
88615 |
- |
RS2923 |
Unspecified |
scaffold6642 |
89158 |
89233 |
- |
RS5495 |
Unspecified |
scaffold6642 |
91068 |
91118 |
+ |
RS3872 |
Unspecified |
scaffold6642 |
91119 |
91399 |
+ |
RS2672 |
Unspecified |
scaffold6642 |
91299 |
91413 |
+ |
RS9708 |
Unspecified |
scaffold6642 |
91527 |
91676 |
- |
RS10860 |
Unspecified |
scaffold6642 |
91880 |
92127 |
- |
RS8166 |
Unspecified |
scaffold6642 |
92161 |
92191 |
+ |
(GGT)n |
Simple_repeat |
scaffold6642 |
92351 |
92488 |
+ |
(TA)n |
Simple_repeat |
scaffold6642 |
92351 |
92418 |
+ |
(TA)n |
Simple_repeat |
scaffold6642 |
92395 |
92488 |
- |
RS4738 |
Unspecified |
scaffold6642 |
93543 |
93613 |
+ |
(T)n |
Simple_repeat |
scaffold6642 |
97273 |
97325 |
+ |
(TA)n |
Simple_repeat |
scaffold6642 |
97322 |
97452 |
- |
RS6506 |
Unspecified |
scaffold6642 |
98562 |
98598 |
+ |
(T)n |
Simple_repeat |
scaffold6642 |
100005 |
100028 |
+ |
(TCGT)n |
Simple_repeat |
scaffold6642 |
100841 |
101218 |
- |
RS561 |
Unspecified |
scaffold6642 |
101267 |
101398 |
+ |
Copia-2_SL-I |
LTR/Copia |
scaffold6642 |
101481 |
103395 |
+ |
Copia-2_SL-I |
LTR/Copia |
scaffold6642 |
103683 |
105293 |
+ |
Copia-2_SL-I |
LTR/Copia |
scaffold6642 |
105569 |
105947 |
- |
RS561 |
Unspecified |
scaffold6642 |
105949 |
105999 |
+ |
(TAT)n |
Simple_repeat |
scaffold6642 |
107893 |
107963 |
+ |
(CTATTTT)n |
Simple_repeat |
scaffold6642 |
109009 |
109035 |
+ |
(TTTCTT)n |
Simple_repeat |
scaffold6642 |
109445 |
109477 |
+ |
(CGTATC)n |
Simple_repeat |
scaffold6642 |
109488 |
109727 |
- |
RS221 |
Unspecified |
scaffold6642 |
110254 |
110303 |
+ |
(TTGTTTA)n |
Simple_repeat |
scaffold6642 |
110941 |
111455 |
+ |
PL834 |
Unspecified |
scaffold6642 |
114737 |
115232 |
+ |
PL475 |
Unspecified |
scaffold6642 |
115312 |
115349 |
+ |
(A)n |
Simple_repeat |
scaffold6642 |
115675 |
115862 |
+ |
RS446 |
Unspecified |
scaffold6642 |
116747 |
116856 |
+ |
PL67 |
Unspecified |
scaffold6642 |
116961 |
116994 |
+ |
(T)n |
Simple_repeat |
scaffold6642 |
117099 |
117205 |
- |
RS11001 |
Unspecified |
scaffold6642 |
117327 |
117434 |
+ |
PL101 |
Unspecified |
scaffold6642 |
118508 |
118572 |
+ |
RS79 |
Unspecified |
scaffold6642 |
118565 |
118821 |
- |
RS109 |
Unspecified |
scaffold6642 |
118820 |
118913 |
+ |
RS38 |
Unspecified |
scaffold6642 |
119105 |
119259 |
- |
RS4768 |
Unspecified |
scaffold6642 |
120450 |
120660 |
+ |
RTE-1_STu |
LINE/RTE-BovB |
scaffold6642 |
120832 |
120964 |
+ |
(TTTTAA)n |
Simple_repeat |
scaffold6642 |
121018 |
121230 |
- |
Copia-3_PTri-I |
LTR/Copia |
scaffold6642 |
121231 |
121303 |
- |
Copia-3_PTri-I |
LTR/Copia |
scaffold6642 |
121598 |
121738 |
+ |
RS148 |
Unspecified |
scaffold6642 |
122037 |
122230 |
+ |
RS163 |
Unspecified |
scaffold6642 |
122790 |
122826 |
+ |
(AATT)n |
Simple_repeat |
scaffold6642 |
123007 |
123069 |
+ |
RS12115 |
Unspecified |
scaffold6642 |
123014 |
123096 |
+ |
RS18405 |
Unspecified |
scaffold6642 |
123206 |
123242 |
+ |
A-rich |
Low_complexity |
scaffold6642 |
124119 |
124167 |
+ |
Copia-3_PTri-I |
LTR/Copia |
scaffold6642 |
124169 |
124313 |
+ |
Copia-3_PTri-I |
LTR/Copia |
scaffold6642 |
124329 |
124376 |
+ |
Copia-3_PTri-I |
LTR/Copia |
scaffold6642 |
126566 |
126609 |
+ |
(T)n |
Simple_repeat |
scaffold6642 |
128437 |
131405 |
+ |
Gypsy18-PTR_I-int |
LTR/Gypsy |
scaffold6642 |
128437 |
131277 |
+ |
Gypsy18-PTR_I-int |
LTR/Gypsy |
scaffold6642 |
131231 |
131405 |
+ |
RS7686 |
Unspecified |
scaffold6642 |
131412 |
131449 |
+ |
(AAAAAT)n |
Simple_repeat |
scaffold6642 |
131552 |
131590 |
+ |
(A)n |
Simple_repeat |
scaffold6642 |
131632 |
131700 |
+ |
(CCA)n |
Simple_repeat |
scaffold6642 |
133207 |
133256 |
+ |
(TGC)n |
Simple_repeat |
scaffold6642 |
133680 |
133770 |
+ |
Gypsy-30_GM-I |
LTR/Gypsy |