scaffold6646 Repeat List
| genome |
start |
end |
strand |
repeat-name |
repeat-class |
| scaffold6646 |
1 |
305 |
- |
RIRE1_I-int |
LTR/Copia |
| scaffold6646 |
512 |
1847 |
- |
RIRE1_I-int |
LTR/Copia |
| scaffold6646 |
1843 |
1932 |
- |
RIRE1_I-int |
LTR/Copia |
| scaffold6646 |
2210 |
2417 |
- |
RS13321 |
Unspecified |
| scaffold6646 |
2912 |
2993 |
+ |
PL405 |
Unspecified |
| scaffold6646 |
7530 |
7706 |
+ |
Angela1_AT_I-int |
LTR/Copia |
| scaffold6646 |
7702 |
8138 |
- |
RS76 |
Unspecified |
| scaffold6646 |
8184 |
8213 |
+ |
(TTTTC)n |
Simple_repeat |
| scaffold6646 |
8595 |
9134 |
+ |
TY1_Copia |
TY1_Copia(TransposonPSI) |
| scaffold6646 |
8661 |
9449 |
+ |
TY1_Copia |
TY1_Copia(TransposonPSI) |
| scaffold6646 |
9057 |
9084 |
+ |
A-rich |
Low_complexity |
| scaffold6646 |
9229 |
9448 |
+ |
Copia7-ZM_I-int |
LTR/Copia |
| scaffold6646 |
10798 |
11190 |
+ |
PL452 |
Unspecified |
| scaffold6646 |
11214 |
11620 |
+ |
Copia7-ZM_I-int |
LTR/Copia |
| scaffold6646 |
11817 |
12336 |
+ |
Copia-10_BD-I |
LTR/Copia |
| scaffold6646 |
12732 |
12760 |
+ |
(TTGTA)n |
Simple_repeat |
| scaffold6646 |
13061 |
13125 |
+ |
(AATTA)n |
Simple_repeat |
| scaffold6646 |
13542 |
13782 |
+ |
RS8061 |
Unspecified |
| scaffold6646 |
13999 |
14280 |
+ |
RS12188 |
Unspecified |
| scaffold6646 |
14288 |
14479 |
+ |
RS10611 |
Unspecified |
| scaffold6646 |
14645 |
14871 |
+ |
RS5280 |
Unspecified |
| scaffold6646 |
14860 |
15087 |
+ |
RS12037 |
Unspecified |
| scaffold6646 |
15318 |
15556 |
+ |
RS6748 |
Unspecified |
| scaffold6646 |
15555 |
15743 |
+ |
RS9413 |
Unspecified |
| scaffold6646 |
15704 |
15879 |
+ |
RS9810 |
Unspecified |
| scaffold6646 |
16144 |
16171 |
+ |
(ATATT)n |
Simple_repeat |
| scaffold6646 |
16407 |
16549 |
- |
Gypsy-46_Mad-I |
LTR/Gypsy |
| scaffold6646 |
17324 |
17451 |
- |
Gypsy-46_Mad-I |
LTR/Gypsy |
| scaffold6646 |
18213 |
18261 |
+ |
(T)n |
Simple_repeat |
| scaffold6646 |
19286 |
19413 |
+ |
RS14718 |
Unspecified |
| scaffold6646 |
19896 |
19935 |
+ |
(T)n |
Simple_repeat |
| scaffold6646 |
20098 |
23480 |
- |
Gypsy-46_Mad-I |
LTR/Gypsy |
| scaffold6646 |
24680 |
25136 |
- |
Gypsy-46_Mad-I |
LTR/Gypsy |
| scaffold6646 |
25821 |
26021 |
- |
Gypsy-34_VV-I |
LTR/Gypsy |
| scaffold6646 |
26248 |
26765 |
- |
Gypsy-34_VV-I |
LTR/Gypsy |
| scaffold6646 |
26880 |
26936 |
+ |
(CTTCTT)n |
Simple_repeat |
| scaffold6646 |
27004 |
27041 |
+ |
(TCT)n |
Simple_repeat |
| scaffold6646 |
27904 |
27932 |
+ |
(TTGTA)n |
Simple_repeat |
| scaffold6646 |
27987 |
28058 |
- |
RS1720 |
Unspecified |
| scaffold6646 |
28233 |
28297 |
+ |
(TTAAT)n |
Simple_repeat |
| scaffold6646 |
28308 |
29354 |
+ |
TY1_Copia |
TY1_Copia(TransposonPSI) |
| scaffold6646 |
28328 |
29349 |
+ |
Copia25-PTR_I-int |
LTR/Copia |
| scaffold6646 |
29929 |
29974 |
+ |
Copia25-PTR_I-int |
LTR/Copia |
| scaffold6646 |
30619 |
30687 |
+ |
(TA)n |
Simple_repeat |
| scaffold6646 |
31075 |
31117 |
+ |
A-rich |
Low_complexity |
| scaffold6646 |
31212 |
31472 |
- |
RS884 |
Unspecified |
| scaffold6646 |
31488 |
31519 |
+ |
(ATATAG)n |
Simple_repeat |
| scaffold6646 |
31525 |
31768 |
- |
RS777 |
Unspecified |
| scaffold6646 |
31769 |
31835 |
+ |
RS215 |
Unspecified |
| scaffold6646 |
32332 |
32829 |
+ |
Helitron-N4_SBi |
RC/Helitron |
| scaffold6646 |
32826 |
33017 |
- |
PL198 |
Unspecified |
| scaffold6646 |
33425 |
33531 |
+ |
RS9751 |
Unspecified |
| scaffold6646 |
33496 |
33756 |
- |
RS18405 |
Unspecified |
| scaffold6646 |
33531 |
33773 |
- |
RS4 |
Unspecified |
| scaffold6646 |
33953 |
33989 |
+ |
(T)n |
Simple_repeat |
| scaffold6646 |
34838 |
34893 |
+ |
(TGTGT)n |
Simple_repeat |
| scaffold6646 |
34918 |
34973 |
+ |
(GATGA)n |
Simple_repeat |
| scaffold6646 |
35159 |
35207 |
+ |
(ATGTTT)n |
Simple_repeat |
| scaffold6646 |
35159 |
35535 |
+ |
(ATGTTT)n |
Simple_repeat |
| scaffold6646 |
35193 |
35535 |
- |
RS814 |
Unspecified |
| scaffold6646 |
36184 |
36257 |
+ |
(TGTA)n |
Simple_repeat |
| scaffold6646 |
36444 |
36812 |
+ |
RS6722 |
Unspecified |
| scaffold6646 |
36860 |
37044 |
+ |
(TATG)n |
Simple_repeat |
| scaffold6646 |
37149 |
37614 |
+ |
(ATGTGTT)n |
Simple_repeat |
| scaffold6646 |
37149 |
37272 |
+ |
(ATGTGTT)n |
Simple_repeat |
| scaffold6646 |
37255 |
37614 |
+ |
RS2108 |
Unspecified |
| scaffold6646 |
37509 |
37648 |
- |
RS17814 |
Unspecified |
| scaffold6646 |
37509 |
37672 |
+ |
RS6230 |
Unspecified |
| scaffold6646 |
37546 |
37662 |
- |
RS131 |
Unspecified |
| scaffold6646 |
37585 |
38795 |
- |
RS608 |
Unspecified |
| scaffold6646 |
38412 |
38853 |
- |
RS2603 |
Unspecified |
| scaffold6646 |
39702 |
39730 |
+ |
(TTATAC)n |
Simple_repeat |
| scaffold6646 |
41131 |
41724 |
- |
RS1491 |
Unspecified |
| scaffold6646 |
41495 |
41929 |
- |
RS2631 |
Unspecified |
| scaffold6646 |
43552 |
43600 |
+ |
Gypsy-193_ZM-I |
LTR/Gypsy |
| scaffold6646 |
44237 |
44310 |
+ |
(TGTA)n |
Simple_repeat |
| scaffold6646 |
44497 |
44865 |
+ |
RS6722 |
Unspecified |
| scaffold6646 |
44913 |
45112 |
+ |
(TATG)n |
Simple_repeat |
| scaffold6646 |
45202 |
45667 |
+ |
(ATGTGTT)n |
Simple_repeat |
| scaffold6646 |
45202 |
45325 |
+ |
(ATGTGTT)n |
Simple_repeat |
| scaffold6646 |
45308 |
45667 |
+ |
RS2108 |
Unspecified |
| scaffold6646 |
45599 |
45715 |
- |
RS131 |
Unspecified |
| scaffold6646 |
45639 |
46377 |
+ |
PL733 |
Unspecified |
| scaffold6646 |
46377 |
46499 |
- |
RS814 |
Unspecified |
| scaffold6646 |
47590 |
47654 |
- |
RS814 |
Unspecified |
| scaffold6646 |
47656 |
47817 |
- |
RS5793 |
Unspecified |
| scaffold6646 |
48023 |
48175 |
- |
RS1853 |
Unspecified |
| scaffold6646 |
48041 |
48315 |
- |
RS5859 |
Unspecified |
| scaffold6646 |
49531 |
49779 |
+ |
RS6829 |
Unspecified |
| scaffold6646 |
49852 |
49900 |
+ |
Gypsy-193_ZM-I |
LTR/Gypsy |
| scaffold6646 |
49995 |
50018 |
+ |
(TAA)n |
Simple_repeat |
| scaffold6646 |
50140 |
50272 |
+ |
(TCA)n |
Simple_repeat |
| scaffold6646 |
52499 |
52981 |
- |
RS131 |
Unspecified |
| scaffold6646 |
53037 |
53159 |
+ |
RS2108 |
Unspecified |
| scaffold6646 |
53067 |
53232 |
- |
RS131 |
Unspecified |
| scaffold6646 |
53069 |
53267 |
- |
RS62 |
Unspecified |
| scaffold6646 |
53134 |
53916 |
- |
RS131 |
Unspecified |
| scaffold6646 |
53942 |
54017 |
+ |
(TAATTTT)n |
Simple_repeat |
| scaffold6646 |
54016 |
54047 |
+ |
(ATATAG)n |
Simple_repeat |
| scaffold6646 |
54490 |
54523 |
+ |
(ATTTTG)n |
Simple_repeat |
| scaffold6646 |
54522 |
54574 |
+ |
(ATAT)n |
Simple_repeat |
| scaffold6646 |
54812 |
54846 |
+ |
(ATTTTG)n |
Simple_repeat |
| scaffold6646 |
55115 |
55137 |
+ |
(T)n |
Simple_repeat |
| scaffold6646 |
55778 |
57166 |
+ |
RS217 |
Unspecified |
| scaffold6646 |
57154 |
57627 |
+ |
PL678 |
Unspecified |
| scaffold6646 |
58419 |
58485 |
+ |
A-rich |
Low_complexity |
| scaffold6646 |
58652 |
58683 |
+ |
(GACCC)n |
Simple_repeat |
| scaffold6646 |
58720 |
58775 |
+ |
(TGGATC)n |
Simple_repeat |
| scaffold6646 |
58932 |
58985 |
+ |
(CTT)n |
Simple_repeat |
| scaffold6646 |
59012 |
59073 |
+ |
(AATTTGA)n |
Simple_repeat |
| scaffold6646 |
62099 |
62760 |
- |
MEGY-I_MT |
LTR/Gypsy |
| scaffold6646 |
62824 |
62880 |
+ |
(CTTCTC)n |
Simple_repeat |
| scaffold6646 |
62955 |
63620 |
+ |
RS661 |
Unspecified |
| scaffold6646 |
63958 |
64121 |
- |
MEGY-I_MT |
LTR/Gypsy |
| scaffold6646 |
65211 |
65292 |
+ |
A-rich |
Low_complexity |
| scaffold6646 |
66184 |
67180 |
- |
Copia-10_BD-I |
LTR/Copia |
| scaffold6646 |
67375 |
68806 |
- |
Copia7-ZM_I-int |
LTR/Copia |
| scaffold6646 |
68722 |
70232 |
- |
RS4087 |
Unspecified |
| scaffold6646 |
70331 |
70363 |
+ |
(CATCTT)n |
Simple_repeat |
| scaffold6646 |
71183 |
71229 |
+ |
A-rich |
Low_complexity |
| scaffold6646 |
71494 |
71582 |
+ |
(TTTTAT)n |
Simple_repeat |
| scaffold6646 |
72733 |
72987 |
+ |
RS4686 |
Unspecified |
| scaffold6646 |
73060 |
73087 |
+ |
(ATA)n |
Simple_repeat |
| scaffold6646 |
73381 |
73415 |
+ |
A-rich |
Low_complexity |
| scaffold6646 |
73614 |
73646 |
+ |
(TAACTT)n |
Simple_repeat |
| scaffold6646 |
73842 |
73899 |
+ |
A-rich |
Low_complexity |
| scaffold6646 |
74377 |
74551 |
+ |
A-rich |
Low_complexity |
| scaffold6646 |
75111 |
75132 |
+ |
(A)n |
Simple_repeat |
| scaffold6646 |
75606 |
75877 |
- |
RS289 |
Unspecified |
| scaffold6646 |
75869 |
75978 |
- |
PL85 |
Unspecified |
| scaffold6646 |
76115 |
76203 |
+ |
(TTTTAT)n |
Simple_repeat |
| scaffold6646 |
78835 |
79489 |
- |
RS107 |
Unspecified |